Wall clock time and date at job start Tue Mar 31 2020 21:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47249 * 2 1 4 4 O 1.33653 * 125.80292 * 270.00168 * 3 2 1 5 5 C 1.34209 * 110.90842 * 179.97438 * 4 3 2 6 6 C 1.34176 * 109.12589 * 359.74799 * 5 4 3 7 7 C 1.36420 * 125.79889 * 90.00221 * 3 2 1 8 8 C 1.47372 * 127.19394 * 359.96306 * 7 3 2 9 9 O 1.21623 * 119.99913 * 35.39963 * 8 7 3 10 10 N 1.34779 * 120.00295 * 215.39885 * 8 7 3 11 11 C 1.46499 * 119.99436 * 355.55445 * 10 8 7 12 12 C 1.46501 * 120.00165 * 175.55440 * 10 8 7 13 13 H 1.08999 * 109.46991 * 0.02562 * 12 10 8 14 14 C 1.52995 * 109.46914 * 240.00194 * 12 10 8 15 15 C 1.53003 * 109.46747 * 119.99843 * 12 10 8 16 16 N 1.46890 * 109.47220 * 305.00136 * 15 12 10 17 17 C 1.46903 * 110.99930 * 180.02562 * 16 15 12 18 18 C 1.50705 * 109.47246 * 179.97438 * 17 16 15 19 19 O 1.21286 * 120.00093 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99955 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00113 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99976 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00222 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99781 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99958 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47117 * 59.99741 * 25 23 21 27 27 H 1.48505 * 109.46681 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46847 * 299.99620 * 25 23 21 29 29 H 1.09005 * 109.46806 * 299.99654 * 1 2 3 30 30 H 1.09000 * 109.47311 * 59.99701 * 1 2 3 31 31 H 1.08993 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46806 * 240.00346 * 2 1 3 33 33 H 1.09000 * 109.47311 * 120.00299 * 2 1 3 34 34 H 1.08000 * 125.43932 * 179.97438 * 5 4 3 35 35 H 1.07997 * 127.02688 * 180.26498 * 6 5 4 36 36 H 1.08994 * 109.47188 * 275.36567 * 11 10 8 37 37 H 1.08997 * 109.47254 * 35.37904 * 11 10 8 38 38 H 1.09007 * 109.46742 * 155.36870 * 11 10 8 39 39 H 1.08992 * 109.47349 * 60.00387 * 14 12 10 40 40 H 1.08999 * 109.46958 * 180.02562 * 14 12 10 41 41 H 1.08999 * 109.47253 * 299.99793 * 14 12 10 42 42 H 1.09004 * 109.46464 * 184.99882 * 15 12 10 43 43 H 1.08999 * 109.47070 * 65.00072 * 15 12 10 44 44 H 1.00898 * 111.00426 * 303.95162 * 16 15 12 45 45 H 1.09004 * 109.47053 * 299.99896 * 17 16 15 46 46 H 1.08995 * 109.47377 * 59.99572 * 17 16 15 47 47 H 0.97008 * 119.99893 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99571 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2930 2.1580 -1.0840 5 6 2.7248 3.3810 -0.7390 6 6 2.7522 3.4763 0.5991 7 6 2.2984 2.1731 1.1065 8 6 2.1541 1.7670 2.5157 9 8 2.3956 0.6217 2.8463 10 7 1.7544 2.6646 3.4383 11 6 1.5574 4.0660 3.0594 12 6 1.5169 2.2389 4.8198 13 1 1.7142 1.1707 4.9098 14 6 0.0619 2.5230 5.1980 15 6 2.4477 3.0098 5.7581 16 7 3.8391 2.8329 5.3215 17 6 4.7634 3.5603 6.2016 18 6 6.1780 3.3552 5.7239 19 8 6.3948 2.6702 4.7469 20 7 7.2021 3.9332 6.3825 21 6 8.4890 3.7462 5.9483 22 1 8.6821 3.1362 5.0783 23 6 9.5448 4.3415 6.6276 24 7 9.3098 5.0843 7.6859 25 14 11.2982 4.0873 6.0355 26 1 11.4309 4.5982 4.6475 27 1 12.2325 4.8232 6.9248 28 1 11.6249 2.6390 6.0633 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0022 4.1647 -1.4284 35 1 3.0493 4.3342 1.1840 36 1 2.5109 4.5920 3.1044 37 1 1.1623 4.1160 2.0448 38 1 0.8522 4.5326 3.7472 39 1 -0.6011 1.9738 4.5296 40 1 -0.1146 2.2067 6.2260 41 1 -0.1350 3.5913 5.1081 42 1 2.3346 2.6310 6.7739 43 1 2.1914 4.0690 5.7346 44 1 4.0813 1.8546 5.2728 45 1 4.5233 4.6234 6.1816 46 1 4.6663 3.1851 7.2203 47 1 7.0287 4.4808 7.1642 48 1 10.0469 5.5002 8.1599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753690780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:26 Heat of formation + Delta-G solvation = -53.712788 kcal Electronic energy + Delta-G solvation = -29752.320686 eV Core-core repulsion = 25616.226312 eV Total energy + Delta-G solvation = -4136.094374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62399 -39.73631 -38.21372 -36.73252 -34.69434 -34.19083 -33.78901 -32.97468 -31.30300 -31.08783 -28.88630 -27.56165 -26.92455 -25.06500 -24.42890 -23.28443 -22.89517 -21.57576 -20.27321 -19.18306 -18.81833 -17.83919 -17.59468 -16.77311 -16.39245 -16.02750 -15.65364 -15.30022 -15.16190 -14.61546 -14.51277 -14.49716 -14.20716 -13.90742 -13.61383 -13.47409 -13.40887 -13.04961 -12.90597 -12.81480 -12.59909 -12.37474 -12.30216 -12.00194 -11.91934 -11.71762 -11.66277 -11.45168 -11.40418 -11.20854 -10.98990 -10.85944 -10.41704 -10.18037 -9.86881 -9.63383 -9.46334 -8.68213 -8.51991 -8.34679 -7.98389 -7.91236 -6.38416 -3.78902 1.42866 2.08745 2.73877 3.09527 3.22646 3.27098 3.27515 3.32631 3.95872 4.11674 4.32854 4.40810 4.64705 4.81604 4.88236 4.94474 5.02993 5.05450 5.09667 5.15095 5.23233 5.24697 5.29604 5.39340 5.48433 5.51363 5.54592 5.58320 5.60084 5.66360 5.80513 5.81942 5.83575 5.86178 5.91446 6.01105 6.03056 6.08272 6.27156 6.30764 6.62771 6.99536 7.27998 7.49758 7.58365 7.72656 8.10202 8.34539 8.65784 9.21865 9.58437 10.10862 10.79473 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.002755 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.578946 B =10161.482178 C =11437.856772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 C 0.063 3.937 4 O -0.177 6.177 5 C -0.046 4.046 6 C -0.180 4.180 7 C -0.227 4.227 8 C 0.600 3.400 9 O -0.541 6.541 10 N -0.585 5.585 11 C 0.079 3.921 12 C 0.138 3.862 13 H 0.100 0.900 14 C -0.158 4.158 15 C 0.048 3.952 16 N -0.662 5.662 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.579 6.579 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.206 0.794 35 H 0.161 0.839 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.352 0.648 45 H 0.083 0.917 46 H 0.041 0.959 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.328 -1.551 -10.193 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C 0.010 3.990 4 O -0.074 6.074 5 C -0.111 4.111 6 C -0.200 4.200 7 C -0.231 4.231 8 C 0.389 3.611 9 O -0.420 6.420 10 N -0.317 5.317 11 C -0.064 4.064 12 C 0.035 3.965 13 H 0.119 0.881 14 C -0.217 4.217 15 C -0.082 4.082 16 N -0.295 5.295 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.462 6.462 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.119 0.881 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.223 0.777 35 H 0.178 0.822 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.171 0.829 45 H 0.101 0.899 46 H 0.059 0.941 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.973 -2.089 -11.294 24.794 hybrid contribution 1.081 0.318 1.299 1.719 sum -20.893 -1.772 -9.996 23.228 Atomic orbital electron populations 1.21732 0.93748 1.02508 1.02215 1.20367 0.96434 0.86941 1.05491 1.22652 0.98998 0.94133 0.83172 1.83728 1.65509 1.23191 1.34949 1.23848 1.04737 0.86087 0.96457 1.23076 1.04828 0.97814 0.94250 1.21096 1.12589 0.95604 0.93827 1.17119 0.75722 0.84529 0.83710 1.90739 1.50567 1.19664 1.81040 1.47280 1.66956 1.08894 1.08522 1.21935 1.01689 0.81951 1.00798 1.21091 0.93862 1.00911 0.80669 0.88150 1.22099 0.95457 1.02212 1.01929 1.22353 0.89493 1.00605 0.95771 1.60012 0.99846 1.17949 1.51681 1.21663 0.92694 0.99605 0.94140 1.19832 0.85872 0.85174 0.86459 1.90549 1.84768 1.42674 1.28242 1.41856 1.05674 1.45003 1.27747 1.19650 0.81517 1.29191 1.12383 0.88054 1.25245 1.00314 0.96487 0.95922 1.69608 1.33256 1.32774 1.18907 0.85926 0.81334 0.78539 0.78481 1.19911 1.20991 1.19918 0.92389 0.92459 0.91375 0.89780 0.86890 0.77715 0.82183 0.91887 0.91082 0.91476 0.92105 0.91292 0.92112 0.94534 0.90945 0.82878 0.89855 0.94075 0.77532 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.06 -0.59 6.27 -27.88 -0.17 -0.76 16 3 C 0.06 0.80 6.62 -34.96 -0.23 0.57 16 4 O -0.18 -2.11 10.52 7.67 0.08 -2.03 16 5 C -0.05 -0.47 12.03 29.30 0.35 -0.11 16 6 C -0.18 -2.16 8.78 -37.45 -0.33 -2.49 16 7 C -0.23 -3.19 5.54 -103.28 -0.57 -3.76 16 8 C 0.60 9.31 7.49 -12.54 -0.09 9.22 16 9 O -0.54 -9.91 14.81 5.26 0.08 -9.83 16 10 N -0.58 -7.49 2.48 -175.22 -0.44 -7.93 16 11 C 0.08 0.80 8.15 59.85 0.49 1.29 16 12 C 0.14 1.63 2.87 -67.93 -0.20 1.43 16 13 H 0.10 1.38 6.91 -51.93 -0.36 1.02 16 14 C -0.16 -1.33 9.18 37.15 0.34 -0.99 16 15 C 0.05 0.60 4.98 -3.83 -0.02 0.58 16 16 N -0.66 -11.29 5.85 -115.06 -0.67 -11.97 16 17 C 0.05 0.94 6.17 -4.97 -0.03 0.91 16 18 C 0.44 10.79 7.82 -10.98 -0.09 10.71 16 19 O -0.58 -16.49 15.78 5.55 0.09 -16.40 16 20 N -0.57 -14.72 5.29 -10.96 -0.06 -14.78 16 21 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 25 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.40 6.57 -51.93 -0.34 1.05 16 34 H 0.21 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.16 1.75 6.39 -52.49 -0.34 1.42 16 36 H 0.06 0.72 7.37 -51.93 -0.38 0.34 16 37 H 0.07 0.65 5.81 -51.93 -0.30 0.35 16 38 H 0.07 0.53 6.44 -51.92 -0.33 0.20 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.45 6.67 -51.93 -0.35 0.10 16 42 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 44 H 0.35 6.75 8.43 -39.29 -0.33 6.42 16 45 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 48 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -35.22 396.74 -6.86 -42.09 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -7.20 Total: 15.05 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.42 Total: 7.58 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.44 Total: -58.93 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: 0.25 Total: -28.26 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.22 -6.86 -42.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753690780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.627 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds