Wall clock time and date at job start Tue Mar 31 2020 20:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34172 * 127.02347 * 2 1 4 4 O 1.34225 * 109.12467 * 179.97438 * 3 2 1 5 5 C 1.33657 * 110.90664 * 359.76139 * 4 3 2 6 6 C 1.36418 * 108.39778 * 0.38900 * 5 4 3 7 7 C 1.47370 * 127.19268 * 179.89187 * 6 5 4 8 8 O 1.21622 * 120.00183 * 179.68450 * 7 6 5 9 9 N 1.34779 * 120.00035 * 359.68693 * 7 6 5 10 10 C 1.46497 * 120.00229 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47262 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47245 * 65.00340 * 11 10 9 13 13 N 1.46904 * 109.47322 * 304.99792 * 11 10 9 14 14 C 1.46900 * 110.99810 * 153.30548 * 13 11 10 15 15 C 1.50699 * 109.46932 * 174.77645 * 14 13 11 16 16 O 1.21292 * 119.99959 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00180 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00170 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99883 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99889 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00098 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46974 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47225 * 119.99498 * 22 20 18 25 25 H 1.48500 * 109.46862 * 240.00062 * 22 20 18 26 26 C 1.53001 * 109.47237 * 185.00463 * 11 10 9 27 27 C 1.53004 * 109.46754 * 299.34419 * 26 11 10 28 28 C 1.52997 * 109.47343 * 59.34116 * 26 11 10 29 29 H 1.09000 * 109.47444 * 270.02309 * 1 2 3 30 30 H 1.09003 * 109.47168 * 30.02413 * 1 2 3 31 31 H 1.09005 * 109.47469 * 150.02442 * 1 2 3 32 32 H 1.07996 * 125.43874 * 359.97438 * 3 2 1 33 33 H 1.07999 * 125.80158 * 180.26742 * 5 4 3 34 34 H 0.96994 * 119.99907 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47138 * 59.99892 * 10 9 7 36 36 H 1.09000 * 109.47254 * 300.00068 * 10 9 7 37 37 H 1.00903 * 110.99207 * 29.35474 * 13 11 10 38 38 H 1.09000 * 109.47121 * 294.77538 * 14 13 11 39 39 H 1.08993 * 109.46983 * 54.77410 * 14 13 11 40 40 H 0.96995 * 119.99597 * 359.97438 * 17 15 14 41 41 H 0.97002 * 119.99784 * 180.02562 * 21 20 18 42 42 H 1.08992 * 109.47681 * 179.34772 * 26 11 10 43 43 H 1.08998 * 109.47327 * 65.86513 * 27 26 11 44 44 H 1.09004 * 109.46919 * 185.86625 * 27 26 11 45 45 H 1.08994 * 109.47089 * 305.85900 * 27 26 11 46 46 H 1.09000 * 109.47395 * 60.00568 * 28 26 11 47 47 H 1.09004 * 109.47445 * 180.02562 * 28 26 11 48 48 H 1.09002 * 109.47145 * 300.00141 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6587 0.0006 5 6 3.6623 -0.6760 0.0062 6 6 2.3922 -1.1739 0.0006 7 6 1.9913 -2.5920 0.0016 8 8 0.8123 -2.8907 0.0019 9 7 2.9312 -3.5581 0.0021 10 6 2.5327 -4.9678 0.0036 11 6 3.7820 -5.8510 0.0033 12 1 4.3302 -5.7053 0.9341 13 7 4.6395 -5.4859 -1.1323 14 6 6.0467 -5.8006 -0.8518 15 6 6.8759 -5.5333 -2.0815 16 8 6.3467 -5.1208 -3.0919 17 7 8.2055 -5.7526 -2.0584 18 6 8.9600 -5.5089 -3.1769 19 1 8.4887 -5.1416 -4.0766 20 6 10.3308 -5.7345 -3.1530 21 7 10.9042 -6.1809 -2.0581 22 14 11.3587 -5.4032 -4.6772 23 1 10.4807 -4.9101 -5.7687 24 1 12.3872 -4.3779 -4.3674 25 1 12.0249 -6.6587 -5.1074 26 6 3.3689 -7.3189 -0.1210 27 6 2.4891 -7.7036 1.0702 28 6 2.5853 -7.5200 -1.4196 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.9894 2.1010 -0.0004 33 1 4.5702 -1.2609 0.0119 34 1 3.8714 -3.3199 0.0015 35 1 1.9390 -5.1785 -0.8860 36 1 1.9397 -5.1768 0.8940 37 1 4.5274 -4.5121 -1.3715 38 1 6.4019 -5.1769 -0.0314 39 1 6.1359 -6.8509 -0.5747 40 1 8.6287 -6.0821 -1.2503 41 1 11.8613 -6.3381 -2.0413 42 1 4.2593 -7.9473 -0.1329 43 1 1.5518 -7.1492 1.0238 44 1 2.2807 -8.7731 1.0375 45 1 3.0082 -7.4629 1.9979 46 1 3.2120 -7.2460 -2.2683 47 1 2.2906 -8.5658 -1.5080 48 1 1.6947 -6.8917 -1.4076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753834009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:34 Heat of formation + Delta-G solvation = -66.120403 kcal Electronic energy + Delta-G solvation = -29250.177599 eV Core-core repulsion = 25113.545191 eV Total energy + Delta-G solvation = -4136.632408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.78517 -39.86461 -38.55395 -37.59657 -34.42062 -34.11140 -34.02126 -33.21888 -31.26044 -31.02330 -28.51662 -27.43056 -27.12440 -26.16711 -24.41236 -23.62649 -22.86776 -20.73185 -20.42454 -19.34962 -19.15689 -18.19513 -17.89988 -16.63978 -16.45220 -16.31136 -15.85852 -15.49462 -15.36031 -14.99775 -14.60155 -14.47242 -14.26368 -13.87454 -13.81061 -13.56728 -13.47641 -13.27866 -13.22792 -13.00296 -12.71282 -12.43704 -12.15913 -11.97452 -11.81072 -11.72229 -11.59814 -11.49844 -11.11230 -10.94600 -10.81412 -10.42050 -10.36895 -10.25500 -10.10703 -9.77814 -9.55238 -9.20584 -8.91925 -8.52086 -8.12339 -7.99717 -6.45365 -3.86151 1.12745 1.80325 2.69225 2.95219 3.13788 3.20871 3.24861 3.31925 3.86181 3.98886 4.23325 4.28284 4.38112 4.54528 4.77854 4.83643 4.99018 5.03663 5.14354 5.19017 5.20510 5.25423 5.30016 5.49397 5.51273 5.57489 5.62111 5.67175 5.69316 5.73261 5.80538 5.83180 5.88578 5.95296 6.01540 6.11922 6.22250 6.22908 6.26653 6.40407 6.61968 6.71623 7.10123 7.26845 7.51288 7.52183 8.02857 8.05253 8.57468 9.14750 9.50557 10.01893 10.72360 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.002911 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.478000 B = 9615.388814 C =12023.734839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.133 4.133 3 C -0.048 4.048 4 O -0.170 6.170 5 C 0.028 3.972 6 C -0.237 4.237 7 C 0.591 3.409 8 O -0.534 6.534 9 N -0.728 5.728 10 C 0.116 3.884 11 C 0.080 3.920 12 H 0.050 0.950 13 N -0.660 5.660 14 C 0.049 3.951 15 C 0.440 3.560 16 O -0.580 6.580 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.080 4.080 27 C -0.152 4.152 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.207 0.793 33 H 0.211 0.789 34 H 0.395 0.605 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.346 0.654 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.045 0.955 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.968 7.207 10.427 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C -0.114 4.114 4 O -0.064 6.064 5 C -0.043 4.043 6 C -0.241 4.241 7 C 0.379 3.621 8 O -0.412 6.412 9 N -0.381 5.381 10 C -0.008 4.008 11 C -0.030 4.030 12 H 0.068 0.932 13 N -0.294 5.294 14 C -0.084 4.084 15 C 0.226 3.774 16 O -0.464 6.464 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.100 4.100 27 C -0.210 4.210 28 C -0.201 4.201 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.224 0.776 33 H 0.227 0.773 34 H 0.230 0.770 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.166 0.834 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.863 6.836 9.426 20.492 hybrid contribution 1.677 0.540 0.468 1.823 sum -15.186 7.376 9.894 19.568 Atomic orbital electron populations 1.20229 0.88329 1.03246 1.02464 1.21409 0.97271 0.90328 1.04452 1.23730 0.79697 0.99728 1.08212 1.83806 1.29637 1.22296 1.70700 1.24492 0.98853 0.81232 0.99713 1.21403 0.93393 0.94239 1.15095 1.17189 0.85430 0.83638 0.75888 1.90760 1.17218 1.83328 1.49867 1.45911 1.09395 1.06723 1.76069 1.21764 0.97162 0.78327 1.03507 1.21845 0.92747 0.95622 0.92831 0.93231 1.60001 1.05318 1.27199 1.36881 1.21761 0.88243 1.01902 0.96455 1.19781 0.82946 0.85115 0.89605 1.90540 1.71570 1.50482 1.33790 1.41876 1.05542 1.58048 1.14625 1.19744 0.89174 1.41185 0.92687 0.87879 1.25257 0.97141 0.97135 0.98397 1.69617 1.11906 1.45611 1.27179 0.85814 0.79456 0.77978 0.81201 1.19197 1.20766 1.20732 1.21026 0.99058 0.94289 0.95641 1.21937 0.99825 1.01512 0.97678 1.21805 0.99901 1.00317 0.98030 0.91286 0.91737 0.89907 0.77627 0.77273 0.77004 0.89693 0.90531 0.83351 0.93941 0.89403 0.77523 0.91916 0.90636 0.92474 0.92457 0.92878 0.90548 0.93558 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.00 36.00 0.36 -0.45 16 2 C -0.13 -1.42 6.37 -102.49 -0.65 -2.08 16 3 C -0.05 -0.42 11.96 29.30 0.35 -0.07 16 4 O -0.17 -1.70 10.52 7.62 0.08 -1.62 16 5 C 0.03 0.27 11.61 30.08 0.35 0.62 16 6 C -0.24 -2.76 6.31 -103.27 -0.65 -3.41 16 7 C 0.59 7.74 7.81 -12.54 -0.10 7.64 16 8 O -0.53 -8.51 15.41 5.26 0.08 -8.42 16 9 N -0.73 -8.06 4.97 -61.40 -0.30 -8.36 16 10 C 0.12 1.30 4.59 -4.05 -0.02 1.28 16 11 C 0.08 0.90 2.02 -67.71 -0.14 0.76 16 12 H 0.05 0.51 7.83 -51.93 -0.41 0.11 16 13 N -0.66 -9.52 5.10 -107.99 -0.55 -10.08 16 14 C 0.05 0.78 5.93 -4.98 -0.03 0.76 16 15 C 0.44 9.85 7.83 -10.99 -0.09 9.76 16 16 O -0.58 -15.15 15.89 5.55 0.09 -15.07 16 17 N -0.56 -13.76 5.29 -10.96 -0.06 -13.81 16 18 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 22 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.08 -0.88 2.85 -90.62 -0.26 -1.14 16 27 C -0.15 -1.36 8.69 37.16 0.32 -1.04 16 28 C -0.14 -1.71 8.68 37.16 0.32 -1.38 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.96 6.91 -51.93 -0.36 0.60 16 32 H 0.21 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.21 1.39 7.47 -52.49 -0.39 0.99 16 34 H 0.40 3.72 6.38 -40.82 -0.26 3.46 16 35 H 0.08 1.08 6.15 -51.93 -0.32 0.76 16 36 H 0.08 0.83 6.86 -51.93 -0.36 0.47 16 37 H 0.35 5.09 6.61 -39.29 -0.26 4.83 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.32 7.44 -51.93 -0.39 0.94 16 40 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 41 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.08 0.89 7.49 -51.93 -0.39 0.50 16 43 H 0.06 0.50 6.89 -51.93 -0.36 0.14 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 1.12 7.62 -51.93 -0.40 0.72 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.05 0.58 6.31 -51.93 -0.33 0.25 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -33.47 395.18 -6.48 -39.94 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -7.00 Total: 15.63 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.47 Total: 3.45 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.19 Total: -55.59 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: 0.25 Total: -25.11 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.47 -6.48 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753834009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.177 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds