Wall clock time and date at job start Tue Mar 31 2020 20:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34172 * 127.02347 * 2 1 4 4 O 1.34225 * 109.12467 * 179.97438 * 3 2 1 5 5 C 1.33657 * 110.90664 * 359.76139 * 4 3 2 6 6 C 1.36418 * 108.39778 * 0.38900 * 5 4 3 7 7 C 1.47370 * 127.19268 * 179.89187 * 6 5 4 8 8 O 1.21622 * 120.00183 * 179.68450 * 7 6 5 9 9 N 1.34779 * 120.00035 * 359.68693 * 7 6 5 10 10 C 1.46497 * 120.00229 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47262 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47245 * 65.00340 * 11 10 9 13 13 N 1.46904 * 109.47322 * 304.99792 * 11 10 9 14 14 C 1.46900 * 110.99810 * 153.30548 * 13 11 10 15 15 C 1.50699 * 109.46932 * 174.77645 * 14 13 11 16 16 O 1.21292 * 119.99959 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00180 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00170 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99883 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99889 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00098 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46974 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47225 * 119.99498 * 22 20 18 25 25 H 1.48500 * 109.46862 * 240.00062 * 22 20 18 26 26 C 1.53001 * 109.47237 * 185.00463 * 11 10 9 27 27 C 1.53004 * 109.46754 * 299.34419 * 26 11 10 28 28 C 1.52997 * 109.47343 * 59.34116 * 26 11 10 29 29 H 1.09000 * 109.47444 * 270.02309 * 1 2 3 30 30 H 1.09003 * 109.47168 * 30.02413 * 1 2 3 31 31 H 1.09005 * 109.47469 * 150.02442 * 1 2 3 32 32 H 1.07996 * 125.43874 * 359.97438 * 3 2 1 33 33 H 1.07999 * 125.80158 * 180.26742 * 5 4 3 34 34 H 0.96994 * 119.99907 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47138 * 59.99892 * 10 9 7 36 36 H 1.09000 * 109.47254 * 300.00068 * 10 9 7 37 37 H 1.00903 * 110.99207 * 29.35474 * 13 11 10 38 38 H 1.09000 * 109.47121 * 294.77538 * 14 13 11 39 39 H 1.08993 * 109.46983 * 54.77410 * 14 13 11 40 40 H 0.96995 * 119.99597 * 359.97438 * 17 15 14 41 41 H 0.97002 * 119.99784 * 180.02562 * 21 20 18 42 42 H 1.08992 * 109.47681 * 179.34772 * 26 11 10 43 43 H 1.08998 * 109.47327 * 65.86513 * 27 26 11 44 44 H 1.09004 * 109.46919 * 185.86625 * 27 26 11 45 45 H 1.08994 * 109.47089 * 305.85900 * 27 26 11 46 46 H 1.09000 * 109.47395 * 60.00568 * 28 26 11 47 47 H 1.09004 * 109.47445 * 180.02562 * 28 26 11 48 48 H 1.09002 * 109.47145 * 300.00141 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6587 0.0006 5 6 3.6623 -0.6760 0.0062 6 6 2.3922 -1.1739 0.0006 7 6 1.9913 -2.5920 0.0016 8 8 0.8123 -2.8907 0.0019 9 7 2.9312 -3.5581 0.0021 10 6 2.5327 -4.9678 0.0036 11 6 3.7820 -5.8510 0.0033 12 1 4.3302 -5.7053 0.9341 13 7 4.6395 -5.4859 -1.1323 14 6 6.0467 -5.8006 -0.8518 15 6 6.8759 -5.5333 -2.0815 16 8 6.3467 -5.1208 -3.0919 17 7 8.2055 -5.7526 -2.0584 18 6 8.9600 -5.5089 -3.1769 19 1 8.4887 -5.1416 -4.0766 20 6 10.3308 -5.7345 -3.1530 21 7 10.9042 -6.1809 -2.0581 22 14 11.3587 -5.4032 -4.6772 23 1 10.4807 -4.9101 -5.7687 24 1 12.3872 -4.3779 -4.3674 25 1 12.0249 -6.6587 -5.1074 26 6 3.3689 -7.3189 -0.1210 27 6 2.4891 -7.7036 1.0702 28 6 2.5853 -7.5200 -1.4196 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.9894 2.1010 -0.0004 33 1 4.5702 -1.2609 0.0119 34 1 3.8714 -3.3199 0.0015 35 1 1.9390 -5.1785 -0.8860 36 1 1.9397 -5.1768 0.8940 37 1 4.5274 -4.5121 -1.3715 38 1 6.4019 -5.1769 -0.0314 39 1 6.1359 -6.8509 -0.5747 40 1 8.6287 -6.0821 -1.2503 41 1 11.8613 -6.3381 -2.0413 42 1 4.2593 -7.9473 -0.1329 43 1 1.5518 -7.1492 1.0238 44 1 2.2807 -8.7731 1.0375 45 1 3.0082 -7.4629 1.9979 46 1 3.2120 -7.2460 -2.2683 47 1 2.2906 -8.5658 -1.5080 48 1 1.6947 -6.8917 -1.4076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753834009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:32 Heat of formation + Delta-G solvation = -90.772181 kcal Electronic energy + Delta-G solvation = -29251.246581 eV Core-core repulsion = 25113.545191 eV Total energy + Delta-G solvation = -4137.701390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.53749 -40.89049 -40.08740 -38.87147 -35.98560 -35.37514 -34.80460 -34.47753 -33.21143 -31.85300 -29.61041 -28.15371 -28.04054 -27.61040 -25.84297 -24.79063 -23.76043 -21.45168 -21.40017 -21.02277 -20.08711 -19.87589 -19.03918 -17.89076 -17.33186 -17.23252 -17.07449 -16.72254 -16.50958 -16.33960 -15.87372 -15.84427 -15.35748 -15.16344 -15.04933 -14.74755 -14.30797 -14.22933 -14.12449 -13.98157 -13.81785 -13.55292 -13.44734 -13.30660 -13.06016 -12.89853 -12.70803 -12.60592 -12.46777 -12.38458 -12.11644 -11.88175 -11.74571 -11.49432 -11.33960 -11.11747 -10.63969 -10.30638 -10.14311 -9.98614 -9.63735 -9.30393 -8.45405 -5.93220 0.31086 1.05774 1.36933 1.42756 1.56096 1.95226 2.08457 2.11342 2.27072 2.29733 2.86413 3.22611 3.48951 3.55642 3.60725 3.66656 4.00326 4.05109 4.12821 4.31225 4.32196 4.38961 4.39645 4.47186 4.49809 4.60623 4.65056 4.73248 4.79879 4.87908 4.91111 4.95229 5.02807 5.05486 5.11964 5.16763 5.25125 5.35365 5.43072 5.49889 5.53308 5.58938 5.89793 5.96987 6.10744 6.36373 6.37543 6.62818 7.09673 7.15634 7.59920 8.15687 8.72083 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.002911 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.478000 B = 9615.388814 C =12023.734839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.164 4.164 3 C -0.034 4.034 4 O -0.176 6.176 5 C 0.038 3.962 6 C -0.268 4.268 7 C 0.587 3.413 8 O -0.571 6.571 9 N -0.719 5.719 10 C 0.121 3.879 11 C 0.089 3.911 12 H 0.072 0.928 13 N -0.674 5.674 14 C 0.064 3.936 15 C 0.440 3.560 16 O -0.621 6.621 17 N -0.574 5.574 18 C -0.329 4.329 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.988 3.012 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.273 1.273 26 C -0.080 4.080 27 C -0.146 4.146 28 C -0.139 4.139 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.245 0.755 33 H 0.236 0.764 34 H 0.405 0.595 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.343 0.657 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.382 7.823 11.814 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.166 4.166 3 C -0.099 4.099 4 O -0.070 6.070 5 C -0.032 4.032 6 C -0.272 4.272 7 C 0.376 3.624 8 O -0.452 6.452 9 N -0.371 5.371 10 C -0.002 4.002 11 C -0.021 4.021 12 H 0.090 0.910 13 N -0.309 5.309 14 C -0.068 4.068 15 C 0.227 3.773 16 O -0.508 6.508 17 N -0.212 5.212 18 C -0.459 4.459 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.813 3.187 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.100 4.100 27 C -0.204 4.204 28 C -0.197 4.197 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.261 0.739 33 H 0.252 0.748 34 H 0.241 0.759 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.163 0.837 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.230 0.770 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.254 7.437 10.845 20.908 hybrid contribution 1.439 0.359 0.025 1.483 sum -14.815 7.796 10.871 19.961 Atomic orbital electron populations 1.20179 0.87994 1.03017 1.02587 1.21711 0.97974 0.90795 1.06114 1.24399 0.78774 1.00831 1.05909 1.83836 1.30320 1.22344 1.70501 1.24938 0.99041 0.81291 0.97977 1.21498 0.94764 0.93801 1.17171 1.17474 0.85121 0.84526 0.75233 1.90734 1.18684 1.83952 1.51831 1.45828 1.09654 1.06431 1.75224 1.21686 0.97055 0.78393 1.03059 1.21861 0.92137 0.95660 0.92443 0.91045 1.59954 1.04828 1.27185 1.38909 1.21610 0.88031 1.03455 0.93698 1.20890 0.82580 0.82806 0.90989 1.90514 1.72274 1.51824 1.36145 1.41930 1.06317 1.58795 1.14123 1.19652 0.90187 1.42969 0.93098 0.90508 1.25964 0.97589 0.96504 1.01099 1.69667 1.12446 1.45644 1.28358 0.84934 0.77843 0.78233 0.77732 1.19925 1.19573 1.19838 1.21039 0.99089 0.93925 0.95907 1.21881 0.99469 1.01978 0.97024 1.21743 0.99505 1.00862 0.97557 0.91014 0.89333 0.92676 0.73932 0.74761 0.75912 0.91530 0.89630 0.83687 0.90699 0.87853 0.76977 0.91383 0.91131 0.92358 0.91787 0.91650 0.93681 0.92659 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.00 71.23 0.71 -0.81 16 2 C -0.16 -3.41 6.37 -18.49 -0.12 -3.53 16 3 C -0.03 -0.53 11.96 66.89 0.80 0.27 16 4 O -0.18 -3.18 10.52 4.33 0.05 -3.13 16 5 C 0.04 0.68 11.61 67.39 0.78 1.47 16 6 C -0.27 -6.15 6.31 -18.99 -0.12 -6.27 16 7 C 0.59 15.49 7.81 86.65 0.68 16.17 16 8 O -0.57 -18.80 15.41 -4.10 -0.06 -18.86 16 9 N -0.72 -15.39 4.97 -466.42 -2.32 -17.71 16 10 C 0.12 2.61 4.59 86.38 0.40 3.01 16 11 C 0.09 1.82 2.02 44.91 0.09 1.91 16 12 H 0.07 1.23 7.83 -2.39 -0.02 1.21 16 13 N -0.67 -18.75 5.10 -495.58 -2.53 -21.28 16 14 C 0.06 1.94 5.93 85.56 0.51 2.45 16 15 C 0.44 19.66 7.83 87.66 0.69 20.35 16 16 O -0.62 -33.12 15.89 -3.07 -0.05 -33.17 16 17 N -0.57 -28.13 5.29 -306.98 -1.62 -29.75 16 18 C -0.33 -18.23 9.68 84.04 0.81 -17.42 16 19 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 22 Si 0.99 42.30 29.55 68.60 2.03 44.33 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 C -0.08 -1.62 2.85 -10.79 -0.03 -1.65 16 27 C -0.15 -2.27 8.69 71.98 0.63 -1.65 16 28 C -0.14 -3.28 8.68 71.98 0.62 -2.66 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.34 6.91 -2.38 -0.02 1.32 16 32 H 0.24 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.24 2.63 7.47 -2.91 -0.02 2.61 16 34 H 0.40 7.05 6.38 -92.71 -0.59 6.46 16 35 H 0.07 1.71 6.15 -2.39 -0.01 1.70 16 36 H 0.09 1.73 6.86 -2.39 -0.02 1.72 16 37 H 0.34 9.85 6.61 -89.69 -0.59 9.25 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 2.87 7.44 -2.39 -0.02 2.85 16 40 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 41 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 42 H 0.07 1.53 7.49 -2.39 -0.02 1.51 16 43 H 0.06 0.91 6.89 -2.39 -0.02 0.89 16 44 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.04 1.34 7.62 -2.39 -0.02 1.32 16 47 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.05 1.20 6.31 -2.39 -0.02 1.18 16 Total: -1.00 -74.44 395.18 1.79 -72.64 By element: Atomic # 1 Polarization: 44.54 SS G_CDS: -0.90 Total: 43.64 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.92 Total: 11.50 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -6.18 Total: -116.94 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -0.07 Total: -55.16 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -74.44 1.79 -72.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753834009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.131 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds