Wall clock time and date at job start Tue Mar 31 2020 21:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47230 * 2 1 4 4 O 1.33648 * 125.80024 * 270.33073 * 3 2 1 5 5 C 1.34220 * 110.90418 * 180.12925 * 4 3 2 6 6 C 1.34171 * 109.12740 * 359.58246 * 5 4 3 7 7 C 1.36413 * 125.79841 * 89.99896 * 3 2 1 8 8 C 1.47382 * 127.19721 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99683 * 321.29088 * 8 7 3 10 10 N 1.34775 * 120.00126 * 141.29276 * 8 7 3 11 11 C 1.46493 * 120.00091 * 5.18530 * 10 8 7 12 12 C 1.46503 * 119.99452 * 185.19246 * 10 8 7 13 13 C 1.52998 * 109.47510 * 89.99728 * 12 10 8 14 14 C 1.52998 * 109.47366 * 179.97438 * 13 12 10 15 15 N 1.46897 * 109.47390 * 180.02562 * 14 13 12 16 16 C 1.46900 * 110.99822 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.46759 * 179.97438 * 16 15 14 18 18 O 1.21296 * 119.99898 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00016 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00191 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99961 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00153 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99710 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00000 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47523 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47240 * 119.99839 * 24 22 20 27 27 H 1.48507 * 109.47189 * 240.00151 * 24 22 20 28 28 H 1.08996 * 109.47428 * 59.99989 * 1 2 3 29 29 H 1.09006 * 109.46849 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47046 * 299.99521 * 1 2 3 31 31 H 1.08999 * 109.47452 * 240.00489 * 2 1 3 32 32 H 1.08996 * 109.47428 * 120.00011 * 2 1 3 33 33 H 1.08004 * 125.43523 * 179.85209 * 5 4 3 34 34 H 1.07999 * 127.02613 * 180.24517 * 6 5 4 35 35 H 1.08998 * 109.47216 * 84.55358 * 11 10 8 36 36 H 1.09005 * 109.47144 * 204.55471 * 11 10 8 37 37 H 1.09001 * 109.47173 * 324.55294 * 11 10 8 38 38 H 1.09011 * 109.46498 * 209.99633 * 12 10 8 39 39 H 1.09000 * 109.47342 * 329.99238 * 12 10 8 40 40 H 1.08997 * 109.46750 * 299.99925 * 13 12 10 41 41 H 1.09000 * 109.47218 * 59.99434 * 13 12 10 42 42 H 1.09001 * 109.46836 * 300.00211 * 14 13 12 43 43 H 1.09000 * 109.47041 * 59.99783 * 14 13 12 44 44 H 1.00899 * 111.00013 * 56.04481 * 15 14 13 45 45 H 1.08990 * 109.47318 * 299.99449 * 16 15 14 46 46 H 1.09001 * 109.47057 * 60.00393 * 16 15 14 47 47 H 0.96999 * 119.99555 * 0.02562 * 19 17 16 48 48 H 0.97008 * 119.99500 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2871 2.1600 -1.0839 5 6 2.7240 3.3813 -0.7389 6 6 2.7574 3.4745 0.5991 7 6 2.2983 2.1731 1.1064 8 6 2.1551 1.7666 2.5158 9 8 1.2132 1.0772 2.8570 10 7 3.0680 2.1589 3.4264 11 6 4.1384 3.0814 3.0401 12 6 2.9897 1.6627 4.8026 13 6 3.7990 0.3701 4.9256 14 6 3.7178 -0.1478 6.3629 15 7 4.4953 -1.3885 6.4811 16 6 4.4405 -1.9156 7.8512 17 6 5.2471 -3.1859 7.9333 18 8 5.8124 -3.6101 6.9475 19 7 5.3413 -3.8501 9.1023 20 6 6.0755 -5.0054 9.1771 21 1 6.5788 -5.3831 8.2994 22 6 6.1721 -5.6904 10.3822 23 7 5.5600 -5.2305 11.4502 24 14 7.1730 -7.2642 10.4843 25 1 7.7586 -7.5657 9.1534 26 1 8.2632 -7.0939 11.4781 27 1 6.2926 -8.3846 10.9024 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.0001 4.1655 -1.4284 34 1 3.0598 4.3305 1.1841 35 1 3.7755 4.1070 3.1058 36 1 4.9883 2.9529 3.7104 37 1 4.4480 2.8704 2.0164 38 1 3.3959 2.4117 5.4825 39 1 1.9488 1.4655 5.0592 40 1 3.3929 -0.3788 4.2457 41 1 4.8398 0.5673 4.6690 42 1 4.1241 0.6014 7.0425 43 1 2.6770 -0.3449 6.6198 44 1 5.4498 -1.2465 6.1865 45 1 4.8517 -1.1785 8.5408 46 1 3.4048 -2.1253 8.1187 47 1 4.8895 -3.5106 9.8906 48 1 5.6272 -5.7089 12.2915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754368414.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:37 Heat of formation + Delta-G solvation = -60.442500 kcal Electronic energy + Delta-G solvation = -28151.276707 eV Core-core repulsion = 24014.890510 eV Total energy + Delta-G solvation = -4136.386196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.95797 -39.88261 -38.27625 -36.58016 -35.44265 -34.36427 -33.88027 -33.26230 -31.61873 -31.12623 -29.18573 -27.71907 -26.77499 -25.31584 -24.11463 -23.46569 -22.60104 -21.63580 -21.04029 -19.21565 -19.11127 -17.90240 -17.85239 -16.71318 -16.51347 -16.48702 -15.90900 -15.63585 -15.50344 -14.90259 -14.69943 -14.53206 -14.28135 -14.21410 -13.80062 -13.64752 -13.50372 -13.34083 -13.23223 -12.91978 -12.71090 -12.57661 -12.36218 -12.06489 -11.84857 -11.82352 -11.66956 -11.46145 -11.34768 -11.27492 -11.04690 -10.73655 -10.32685 -10.27239 -10.20418 -10.01464 -9.49948 -9.04107 -8.85004 -8.42884 -8.01723 -7.93268 -6.39739 -3.80358 1.12959 1.70886 2.41841 2.65962 2.94649 3.17917 3.28240 3.35810 3.93710 4.10030 4.12667 4.27054 4.38034 4.51981 4.73027 4.79203 4.84165 4.95313 4.98327 5.05669 5.09410 5.13951 5.19282 5.25128 5.27039 5.30627 5.36375 5.42494 5.51821 5.59293 5.64564 5.70051 5.73431 5.82434 5.88956 6.01338 6.02241 6.08900 6.12801 6.29982 6.35139 6.67513 7.09337 7.26811 7.57459 7.70761 7.94336 8.09022 8.63835 9.20215 9.56895 10.08545 10.78149 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.001675 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.971830 B =16709.354651 C =17260.080192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.074 3.926 4 O -0.175 6.175 5 C -0.040 4.040 6 C -0.190 4.190 7 C -0.239 4.239 8 C 0.590 3.410 9 O -0.529 6.529 10 N -0.610 5.610 11 C 0.077 3.923 12 C 0.117 3.883 13 C -0.131 4.131 14 C 0.063 3.937 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.207 0.793 34 H 0.158 0.842 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.348 0.652 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 22.426 -20.529 31.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C 0.022 3.978 4 O -0.071 6.071 5 C -0.105 4.105 6 C -0.209 4.209 7 C -0.243 4.243 8 C 0.378 3.622 9 O -0.406 6.406 10 N -0.343 5.343 11 C -0.066 4.066 12 C -0.005 4.005 13 C -0.170 4.170 14 C -0.067 4.067 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.224 0.776 34 H 0.175 0.825 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.167 0.833 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.590 21.204 -21.318 31.011 hybrid contribution 1.034 0.469 1.335 1.752 sum -6.555 21.673 -19.983 30.199 Atomic orbital electron populations 1.21744 0.92924 1.02888 1.02856 1.20271 0.97396 0.86242 1.04588 1.22796 0.97446 0.94593 0.83013 1.83770 1.65207 1.23158 1.34934 1.23880 1.04016 0.86283 0.96368 1.22950 1.05721 0.97855 0.94355 1.21104 1.13224 0.96217 0.93805 1.17292 0.81737 0.79286 0.83851 1.90807 1.30997 1.38409 1.80373 1.47631 1.28822 1.47160 1.10642 1.21978 0.90130 0.92462 1.02037 1.21489 1.02378 0.95616 0.81062 1.21894 1.00387 0.96978 0.97735 1.21854 0.99289 0.90382 0.95164 1.60036 1.18700 1.28374 1.23047 1.21671 1.01083 0.95932 0.89497 1.19836 0.86137 0.86959 0.84407 1.90521 1.50521 1.69707 1.35993 1.41870 1.45696 1.23026 1.09550 1.19761 1.26235 0.99729 0.97069 0.87873 1.25268 0.98062 0.99794 0.94922 1.69626 1.43522 1.40417 1.00790 0.85793 0.79094 0.80951 0.78462 1.19224 1.20797 1.20745 0.92705 0.91283 0.90977 0.89753 0.88114 0.77622 0.82460 0.92664 0.90789 0.90587 0.90468 0.89360 0.90498 0.91943 0.95581 0.90868 0.83306 0.93913 0.89559 0.77452 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.05 -0.43 5.93 -27.88 -0.17 -0.59 16 3 C 0.07 0.73 6.62 -34.96 -0.23 0.50 16 4 O -0.17 -1.54 10.52 7.65 0.08 -1.46 16 5 C -0.04 -0.25 12.03 29.30 0.35 0.11 16 6 C -0.19 -1.35 8.84 -37.45 -0.33 -1.68 16 7 C -0.24 -2.44 5.44 -103.27 -0.56 -3.00 16 8 C 0.59 7.04 7.32 -12.54 -0.09 6.95 16 9 O -0.53 -7.90 15.31 5.27 0.08 -7.82 16 10 N -0.61 -5.92 2.87 -182.86 -0.53 -6.45 16 11 C 0.08 0.49 9.10 59.84 0.54 1.03 16 12 C 0.12 1.14 5.42 -4.04 -0.02 1.12 16 13 C -0.13 -1.50 5.80 -26.73 -0.16 -1.65 16 14 C 0.06 0.80 5.68 -3.83 -0.02 0.78 16 15 N -0.67 -11.32 6.13 -115.06 -0.70 -12.03 16 16 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 17 C 0.44 10.72 7.82 -10.98 -0.09 10.63 16 18 O -0.58 -16.28 15.78 5.54 0.09 -16.20 16 19 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 20 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 21 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.02 7.65 -51.93 -0.40 0.62 16 33 H 0.21 0.44 8.06 -52.48 -0.42 0.02 16 34 H 0.16 0.76 6.66 -52.49 -0.35 0.41 16 35 H 0.05 0.26 7.42 -51.93 -0.39 -0.12 16 36 H 0.07 0.40 8.03 -51.93 -0.42 -0.02 16 37 H 0.08 0.48 5.92 -51.93 -0.31 0.17 16 38 H 0.08 0.58 8.07 -51.92 -0.42 0.16 16 39 H 0.09 0.98 7.36 -51.93 -0.38 0.59 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.35 5.98 8.43 -39.29 -0.33 5.65 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -35.10 402.88 -7.38 -42.49 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.44 Total: 11.84 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.67 Total: 6.05 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.56 Total: -57.26 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: 0.25 Total: -25.47 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.10 -7.38 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754368414.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.957 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds