Wall clock time and date at job start Tue Mar 31 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47230 * 2 1 4 4 O 1.33648 * 125.80024 * 270.33073 * 3 2 1 5 5 C 1.34220 * 110.90418 * 180.12925 * 4 3 2 6 6 C 1.34171 * 109.12740 * 359.58246 * 5 4 3 7 7 C 1.36413 * 125.79841 * 89.99896 * 3 2 1 8 8 C 1.47382 * 127.19721 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99683 * 321.29088 * 8 7 3 10 10 N 1.34775 * 120.00126 * 141.29276 * 8 7 3 11 11 C 1.46493 * 120.00091 * 5.18530 * 10 8 7 12 12 C 1.46503 * 119.99452 * 185.19246 * 10 8 7 13 13 C 1.52998 * 109.47510 * 89.99728 * 12 10 8 14 14 C 1.52998 * 109.47366 * 179.97438 * 13 12 10 15 15 N 1.46897 * 109.47390 * 180.02562 * 14 13 12 16 16 C 1.46900 * 110.99822 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.46759 * 179.97438 * 16 15 14 18 18 O 1.21296 * 119.99898 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00016 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00191 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99961 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00153 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99710 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00000 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47523 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47240 * 119.99839 * 24 22 20 27 27 H 1.48507 * 109.47189 * 240.00151 * 24 22 20 28 28 H 1.08996 * 109.47428 * 59.99989 * 1 2 3 29 29 H 1.09006 * 109.46849 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47046 * 299.99521 * 1 2 3 31 31 H 1.08999 * 109.47452 * 240.00489 * 2 1 3 32 32 H 1.08996 * 109.47428 * 120.00011 * 2 1 3 33 33 H 1.08004 * 125.43523 * 179.85209 * 5 4 3 34 34 H 1.07999 * 127.02613 * 180.24517 * 6 5 4 35 35 H 1.08998 * 109.47216 * 84.55358 * 11 10 8 36 36 H 1.09005 * 109.47144 * 204.55471 * 11 10 8 37 37 H 1.09001 * 109.47173 * 324.55294 * 11 10 8 38 38 H 1.09011 * 109.46498 * 209.99633 * 12 10 8 39 39 H 1.09000 * 109.47342 * 329.99238 * 12 10 8 40 40 H 1.08997 * 109.46750 * 299.99925 * 13 12 10 41 41 H 1.09000 * 109.47218 * 59.99434 * 13 12 10 42 42 H 1.09001 * 109.46836 * 300.00211 * 14 13 12 43 43 H 1.09000 * 109.47041 * 59.99783 * 14 13 12 44 44 H 1.00899 * 111.00013 * 56.04481 * 15 14 13 45 45 H 1.08990 * 109.47318 * 299.99449 * 16 15 14 46 46 H 1.09001 * 109.47057 * 60.00393 * 16 15 14 47 47 H 0.96999 * 119.99555 * 0.02562 * 19 17 16 48 48 H 0.97008 * 119.99500 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2871 2.1600 -1.0839 5 6 2.7240 3.3813 -0.7389 6 6 2.7574 3.4745 0.5991 7 6 2.2983 2.1731 1.1064 8 6 2.1551 1.7666 2.5158 9 8 1.2132 1.0772 2.8570 10 7 3.0680 2.1589 3.4264 11 6 4.1384 3.0814 3.0401 12 6 2.9897 1.6627 4.8026 13 6 3.7990 0.3701 4.9256 14 6 3.7178 -0.1478 6.3629 15 7 4.4953 -1.3885 6.4811 16 6 4.4405 -1.9156 7.8512 17 6 5.2471 -3.1859 7.9333 18 8 5.8124 -3.6101 6.9475 19 7 5.3413 -3.8501 9.1023 20 6 6.0755 -5.0054 9.1771 21 1 6.5788 -5.3831 8.2994 22 6 6.1721 -5.6904 10.3822 23 7 5.5600 -5.2305 11.4502 24 14 7.1730 -7.2642 10.4843 25 1 7.7586 -7.5657 9.1534 26 1 8.2632 -7.0939 11.4781 27 1 6.2926 -8.3846 10.9024 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.0001 4.1655 -1.4284 34 1 3.0598 4.3305 1.1841 35 1 3.7755 4.1070 3.1058 36 1 4.9883 2.9529 3.7104 37 1 4.4480 2.8704 2.0164 38 1 3.3959 2.4117 5.4825 39 1 1.9488 1.4655 5.0592 40 1 3.3929 -0.3788 4.2457 41 1 4.8398 0.5673 4.6690 42 1 4.1241 0.6014 7.0425 43 1 2.6770 -0.3449 6.6198 44 1 5.4498 -1.2465 6.1865 45 1 4.8517 -1.1785 8.5408 46 1 3.4048 -2.1253 8.1187 47 1 4.8895 -3.5106 9.8906 48 1 5.6272 -5.7089 12.2915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754368414.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:36 Heat of formation + Delta-G solvation = -85.914083 kcal Electronic energy + Delta-G solvation = -28152.381237 eV Core-core repulsion = 24014.890510 eV Total energy + Delta-G solvation = -4137.490727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.57236 -40.72231 -40.16590 -37.66944 -36.55083 -35.87041 -35.06731 -34.01588 -33.30037 -32.50753 -29.83568 -28.88895 -27.66936 -26.74348 -25.37005 -24.41492 -23.39237 -22.55307 -21.78365 -21.06147 -19.92570 -19.81703 -18.57606 -17.91406 -17.43559 -17.23773 -17.16403 -16.82854 -16.53219 -16.29761 -15.91048 -15.69401 -15.48360 -15.30105 -15.02739 -14.96185 -14.46654 -14.27901 -14.12607 -13.86473 -13.58785 -13.55522 -13.33128 -13.26186 -13.09789 -12.92889 -12.88264 -12.71269 -12.51418 -12.45123 -12.40646 -12.11821 -11.99378 -11.69834 -11.52737 -11.12647 -10.68303 -10.38002 -10.03127 -9.77299 -9.50114 -9.33077 -8.48020 -5.96959 0.40859 1.16705 1.36011 1.41269 1.55778 1.76291 1.94487 2.03119 2.20758 2.28843 2.93235 3.19068 3.50694 3.54930 3.60139 3.93779 3.97698 4.09882 4.11871 4.24059 4.25824 4.31352 4.37464 4.38446 4.45160 4.50200 4.56370 4.61356 4.62308 4.65876 4.72824 4.80121 4.91070 4.92406 4.99135 5.03921 5.14642 5.19036 5.27929 5.39967 5.40812 5.55502 5.88270 6.06199 6.10116 6.33598 6.40346 6.58701 7.10706 7.11130 7.54343 8.09780 8.69597 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.001675 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.971830 B =16709.354651 C =17260.080192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.056 3.944 4 O -0.182 6.182 5 C -0.029 4.029 6 C -0.194 4.194 7 C -0.259 4.259 8 C 0.580 3.420 9 O -0.573 6.573 10 N -0.608 5.608 11 C 0.071 3.929 12 C 0.121 3.879 13 C -0.119 4.119 14 C 0.067 3.933 15 N -0.690 5.690 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.271 1.271 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.250 0.750 34 H 0.182 0.818 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.344 0.656 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 24.523 -20.691 32.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C 0.003 3.997 4 O -0.078 6.078 5 C -0.094 4.094 6 C -0.213 4.213 7 C -0.264 4.264 8 C 0.370 3.630 9 O -0.454 6.454 10 N -0.339 5.339 11 C -0.070 4.070 12 C -0.002 4.002 13 C -0.158 4.158 14 C -0.062 4.062 15 N -0.322 5.322 16 C -0.067 4.067 17 C 0.224 3.776 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.818 3.182 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.196 1.196 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.266 0.734 34 H 0.199 0.801 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.163 0.837 45 H 0.089 0.911 46 H 0.119 0.881 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.841 23.350 -21.460 32.444 hybrid contribution 0.812 -0.109 1.348 1.577 sum -6.029 23.241 -20.113 31.321 Atomic orbital electron populations 1.21680 0.92833 1.03232 1.02046 1.20229 0.97484 0.86466 1.04374 1.22869 0.98284 0.95061 0.83488 1.83774 1.65354 1.24145 1.34574 1.24760 1.01896 0.85786 0.96991 1.23214 1.05954 0.97234 0.94920 1.21234 1.14161 0.98053 0.92937 1.17689 0.81586 0.78807 0.84915 1.90774 1.32920 1.40459 1.81200 1.47755 1.28936 1.46999 1.10246 1.22222 0.89584 0.92762 1.02475 1.21451 1.01246 0.95607 0.81876 1.21759 1.00864 0.96924 0.96277 1.21899 0.98652 0.89318 0.96349 1.60021 1.18942 1.31008 1.22275 1.21530 1.00659 0.93349 0.91130 1.20914 0.85414 0.88172 0.83137 1.90487 1.52218 1.71223 1.37255 1.41934 1.45837 1.22845 1.10347 1.19712 1.28116 1.01629 0.97006 0.90389 1.26067 0.98619 1.02510 0.94138 1.69681 1.43723 1.41463 1.01179 0.84849 0.77931 0.77158 0.78247 1.19863 1.19389 1.19614 0.91594 0.90393 0.93497 0.87982 0.90199 0.73438 0.80056 0.90401 0.89379 0.90466 0.87200 0.91092 0.93899 0.91130 0.92783 0.90947 0.83702 0.91063 0.88064 0.76900 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 71.98 0.71 -1.86 16 2 C -0.05 -0.92 5.93 29.85 0.18 -0.75 16 3 C 0.06 1.12 6.62 25.26 0.17 1.28 16 4 O -0.18 -2.99 10.52 4.46 0.05 -2.95 16 5 C -0.03 -0.29 12.03 66.89 0.80 0.51 16 6 C -0.19 -2.38 8.84 23.65 0.21 -2.17 16 7 C -0.26 -5.28 5.44 -18.99 -0.10 -5.38 16 8 C 0.58 14.26 7.32 86.65 0.63 14.90 16 9 O -0.57 -18.34 15.31 -4.07 -0.06 -18.40 16 10 N -0.61 -11.32 2.87 -850.71 -2.44 -13.77 16 11 C 0.07 0.74 9.10 127.77 1.16 1.90 16 12 C 0.12 2.22 5.42 86.38 0.47 2.69 16 13 C -0.12 -2.67 5.80 30.59 0.18 -2.49 16 14 C 0.07 1.60 5.68 86.30 0.49 2.09 16 15 N -0.69 -22.93 6.13 -517.94 -3.17 -26.10 16 16 C 0.07 2.33 6.17 85.56 0.53 2.86 16 17 C 0.44 21.44 7.82 87.66 0.69 22.13 16 18 O -0.63 -35.88 15.78 -3.08 -0.05 -35.93 16 19 N -0.57 -30.07 5.29 -306.98 -1.62 -31.70 16 20 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 24 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.05 1.09 7.56 -2.38 -0.02 1.07 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.82 7.65 -2.39 -0.02 1.81 16 33 H 0.25 0.02 8.06 -2.91 -0.02 0.00 16 34 H 0.18 1.17 6.66 -2.91 -0.02 1.15 16 35 H 0.08 0.48 7.42 -2.39 -0.02 0.46 16 36 H 0.09 0.68 8.03 -2.38 -0.02 0.66 16 37 H 0.08 0.81 5.92 -2.39 -0.01 0.79 16 38 H 0.11 1.32 8.07 -2.38 -0.02 1.30 16 39 H 0.07 1.58 7.36 -2.39 -0.02 1.56 16 40 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.34 11.75 8.43 -89.69 -0.76 10.99 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 48 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -79.33 402.88 1.90 -77.43 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.50 Total: 38.90 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 7.39 Total: 16.84 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -6.96 Total: -121.40 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -0.06 Total: -57.28 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -79.33 1.90 -77.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754368414.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.484 kcal (2) G-P(sol) polarization free energy of solvation -79.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds