Wall clock time and date at job start Tue Mar 31 2020 20:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34170 * 127.02383 * 2 1 4 4 O 1.34222 * 109.12675 * 179.83573 * 3 2 1 5 5 C 1.33654 * 110.90333 * 0.44769 * 4 3 2 6 6 C 1.36410 * 108.39863 * 359.73144 * 5 4 3 7 7 C 1.47385 * 127.19311 * 179.97438 * 6 5 4 8 8 O 1.21616 * 119.99705 * 149.45419 * 7 6 5 9 9 N 1.34770 * 120.00063 * 329.45624 * 7 6 5 10 10 C 1.46505 * 120.00098 * 4.29189 * 9 7 6 11 11 C 1.46501 * 120.00280 * 184.29046 * 9 7 6 12 12 C 1.52997 * 109.47264 * 90.00040 * 11 9 7 13 13 C 1.52998 * 109.47395 * 180.02562 * 12 11 9 14 14 N 1.46890 * 109.47530 * 179.97438 * 13 12 11 15 15 C 1.46894 * 111.00247 * 66.04285 * 14 13 12 16 16 C 1.46904 * 111.00280 * 189.99985 * 14 13 12 17 17 C 1.50706 * 109.47184 * 169.99990 * 16 14 13 18 18 O 1.21290 * 119.99766 * 359.97438 * 17 16 14 19 19 N 1.34774 * 119.99795 * 180.02562 * 17 16 14 20 20 C 1.37092 * 119.99867 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00360 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00323 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99654 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00673 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47223 * 89.99851 * 24 22 20 26 26 H 1.48500 * 109.47681 * 210.00382 * 24 22 20 27 27 H 1.48510 * 109.46583 * 330.00312 * 24 22 20 28 28 H 1.08992 * 109.47304 * 269.68648 * 1 2 3 29 29 H 1.09000 * 109.46933 * 149.68420 * 1 2 3 30 30 H 1.09005 * 109.46682 * 29.68981 * 1 2 3 31 31 H 1.08002 * 125.44074 * 0.02562 * 3 2 1 32 32 H 1.08007 * 125.79960 * 179.73460 * 5 4 3 33 33 H 1.08991 * 109.47273 * 95.67375 * 10 9 7 34 34 H 1.08997 * 109.47091 * 215.67875 * 10 9 7 35 35 H 1.09007 * 109.46645 * 335.67192 * 10 9 7 36 36 H 1.09001 * 109.47138 * 210.00381 * 11 9 7 37 37 H 1.09001 * 109.47017 * 329.99917 * 11 9 7 38 38 H 1.09000 * 109.46862 * 299.99972 * 12 11 9 39 39 H 1.09001 * 109.47204 * 59.99991 * 12 11 9 40 40 H 1.09001 * 109.46784 * 300.00204 * 13 12 11 41 41 H 1.09001 * 109.47240 * 59.99660 * 13 12 11 42 42 H 1.09001 * 109.47298 * 60.00027 * 15 14 13 43 43 H 1.09003 * 109.47602 * 180.02562 * 15 14 13 44 44 H 1.09005 * 109.47489 * 300.00356 * 15 14 13 45 45 H 1.08999 * 109.46867 * 289.99849 * 16 14 13 46 46 H 1.08997 * 109.47257 * 49.99874 * 16 14 13 47 47 H 0.96996 * 119.99831 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00193 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6587 0.0036 5 6 3.6623 -0.6760 -0.0037 6 6 2.3923 -1.1738 -0.0064 7 6 1.9913 -2.5920 -0.0147 8 8 0.9531 -2.9335 0.5188 9 7 2.7752 -3.5105 -0.6133 10 6 4.0700 -3.1153 -1.1733 11 6 2.3325 -4.9040 -0.7041 12 6 1.5450 -5.1056 -2.0002 13 6 1.0821 -6.5608 -2.0948 14 7 0.3255 -6.7542 -3.3389 15 6 1.1915 -6.5859 -4.5134 16 6 -0.3345 -8.0666 -3.3551 17 6 -1.2905 -8.1337 -4.5182 18 8 -1.4106 -7.1818 -5.2602 19 7 -2.0127 -9.2511 -4.7331 20 6 -2.8828 -9.3120 -5.7908 21 1 -2.9898 -8.4645 -6.4516 22 6 -3.6270 -10.4642 -6.0128 23 7 -3.4973 -11.4953 -5.2085 24 14 -4.8120 -10.5476 -7.4544 25 1 -4.1030 -11.0741 -8.6482 26 1 -5.9435 -11.4471 -7.1139 27 1 -5.3317 -9.1875 -7.7472 28 1 -0.3633 -0.0056 1.0276 29 1 -0.3633 -0.8871 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9895 2.1010 0.0004 32 1 4.5703 -1.2609 -0.0068 33 1 4.8566 -3.3141 -0.4455 34 1 4.2626 -3.6863 -2.0816 35 1 4.0541 -2.0512 -1.4097 36 1 3.2014 -5.5622 -0.7008 37 1 1.6954 -5.1392 0.1485 38 1 0.6761 -4.4474 -2.0035 39 1 2.1821 -4.8705 -2.8528 40 1 1.9508 -7.2193 -2.0913 41 1 0.4449 -6.7956 -1.2422 42 1 1.9984 -7.3179 -4.4778 43 1 0.6060 -6.7340 -5.4208 44 1 1.6128 -5.5806 -4.5132 45 1 0.4167 -8.8498 -3.4566 46 1 -0.8839 -8.2085 -2.4245 47 1 -1.9169 -10.0122 -4.1395 48 1 -4.0171 -12.2995 -5.3632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755040835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:37 Heat of formation + Delta-G solvation = -38.235137 kcal Electronic energy + Delta-G solvation = -28496.197856 eV Core-core repulsion = 24360.774643 eV Total energy + Delta-G solvation = -4135.423213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.97185 -39.93033 -38.60343 -36.87179 -35.85386 -34.22959 -33.85603 -32.55444 -31.20593 -30.60241 -27.95873 -27.65265 -27.31092 -26.47815 -24.91205 -23.64153 -22.27286 -21.05544 -20.71118 -19.61081 -19.09030 -17.82919 -17.79375 -16.85295 -16.50281 -16.40771 -15.83666 -15.62222 -15.46267 -14.88785 -14.76934 -14.59126 -14.25226 -13.88486 -13.78399 -13.53506 -13.41358 -13.27983 -13.23369 -13.13625 -12.84068 -12.52163 -12.21789 -11.98943 -11.88342 -11.83391 -11.59922 -11.44072 -11.21005 -11.17083 -10.88669 -10.53274 -10.36387 -10.22643 -10.18221 -9.81752 -9.44237 -9.03112 -8.98153 -8.39444 -7.93588 -7.78928 -6.38195 -3.78772 1.02940 1.70788 2.46255 2.66196 2.97468 3.20116 3.28493 3.34800 3.95034 4.03616 4.11189 4.18827 4.28994 4.51054 4.62998 4.81343 4.87393 4.91020 5.06863 5.09487 5.15234 5.20360 5.24627 5.28724 5.35854 5.46677 5.49631 5.52523 5.61367 5.65033 5.68547 5.76728 5.77543 5.98131 6.03082 6.08524 6.12434 6.15548 6.32298 6.36092 6.58861 6.60448 7.04294 7.34031 7.46800 7.58667 7.92413 8.10448 8.66158 9.21989 9.58737 10.11008 10.79660 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021635 B = 0.001790 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.888990 B =15642.118968 C =16205.062305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.133 4.133 3 C -0.045 4.045 4 O -0.174 6.174 5 C 0.007 3.993 6 C -0.227 4.227 7 C 0.585 3.415 8 O -0.524 6.524 9 N -0.612 5.612 10 C 0.059 3.941 11 C 0.118 3.882 12 C -0.129 4.129 13 C 0.059 3.941 14 N -0.519 5.519 15 C 0.022 3.978 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.208 0.792 32 H 0.217 0.783 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.012 0.988 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.957 19.367 12.771 29.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C -0.111 4.111 4 O -0.069 6.069 5 C -0.063 4.063 6 C -0.232 4.232 7 C 0.373 3.627 8 O -0.401 6.401 9 N -0.345 5.345 10 C -0.084 4.084 11 C -0.005 4.005 12 C -0.168 4.168 13 C -0.070 4.070 14 N -0.243 5.243 15 C -0.126 4.126 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.233 0.767 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.079 20.182 12.528 29.851 hybrid contribution 0.110 -1.441 -0.341 1.485 sum 18.189 18.740 12.186 28.819 Atomic orbital electron populations 1.20202 0.88179 1.03003 1.02824 1.21440 0.97347 0.90288 1.04395 1.23734 0.79631 0.99735 1.08018 1.83799 1.29672 1.22384 1.71052 1.24843 0.98906 0.81023 1.01484 1.21420 0.93565 0.94326 1.13876 1.17341 0.83407 0.83803 0.78115 1.90815 1.24007 1.80818 1.44414 1.47663 1.19548 1.09334 1.57943 1.22269 0.84408 1.02405 0.99360 1.21492 0.99370 0.80201 0.99404 1.21918 1.00685 0.97425 0.96796 1.22026 0.96281 0.95357 0.93332 1.61516 1.30894 1.30169 1.01682 1.22551 0.95047 0.99505 0.95453 1.21865 0.97176 0.89796 0.99694 1.19759 0.85079 0.84352 0.87792 1.90480 1.69289 1.36845 1.49520 1.41867 1.36920 1.13872 1.27573 1.19693 1.16629 1.00978 1.05395 0.87945 1.25258 0.98740 0.95140 0.98911 1.69615 1.42199 1.04639 1.37964 0.85858 0.79460 0.78334 0.80635 1.20483 1.20950 1.19420 0.90810 0.90648 0.91455 0.77549 0.76702 0.92155 0.90552 0.89901 0.90437 0.89353 0.90506 0.91743 0.95210 0.90701 0.96933 0.88717 0.92238 0.93547 0.89385 0.77502 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.04 36.01 0.36 -0.43 16 2 C -0.13 -1.28 6.37 -102.49 -0.65 -1.93 16 3 C -0.05 -0.32 11.96 29.30 0.35 0.03 16 4 O -0.17 -1.30 10.52 7.63 0.08 -1.22 16 5 C 0.01 0.05 9.73 30.07 0.29 0.34 16 6 C -0.23 -2.30 5.78 -103.27 -0.60 -2.89 16 7 C 0.58 7.10 7.61 -12.54 -0.10 7.01 16 8 O -0.52 -8.36 16.00 5.26 0.08 -8.27 16 9 N -0.61 -5.78 2.87 -182.86 -0.53 -6.31 16 10 C 0.06 0.31 9.11 59.85 0.54 0.86 16 11 C 0.12 1.15 5.47 -4.04 -0.02 1.13 16 12 C -0.13 -1.54 5.46 -26.73 -0.15 -1.69 16 13 C 0.06 0.78 4.96 -3.83 -0.02 0.76 16 14 N -0.52 -9.04 4.50 -244.38 -1.10 -10.14 16 15 C 0.02 0.37 8.96 60.06 0.54 0.91 16 16 C 0.05 0.86 5.45 -4.97 -0.03 0.83 16 17 C 0.44 10.78 7.47 -10.98 -0.08 10.70 16 18 O -0.58 -15.90 13.91 5.55 0.08 -15.83 16 19 N -0.57 -14.63 5.29 -10.96 -0.06 -14.68 16 20 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.88 13.05 55.50 0.72 -24.15 16 24 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.22 0.68 5.95 -52.48 -0.31 0.37 16 33 H 0.06 0.19 7.92 -51.93 -0.41 -0.22 16 34 H 0.08 0.37 8.11 -51.93 -0.42 -0.06 16 35 H 0.08 0.39 4.62 -51.92 -0.24 0.15 16 36 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 37 H 0.09 0.99 7.37 -51.93 -0.38 0.61 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.74 6.55 -51.93 -0.34 0.40 16 40 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 41 H 0.07 0.97 7.93 -51.93 -0.41 0.55 16 42 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.09 1.92 5.83 -51.93 -0.30 1.62 16 44 H 0.06 0.87 6.47 -51.93 -0.34 0.54 16 45 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 46 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 47 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -35.95 395.42 -6.76 -42.72 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.19 Total: 8.08 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 0.21 Total: 7.52 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.96 Total: -55.28 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: 0.24 Total: -25.32 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.95 -6.76 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755040835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.481 kcal (2) G-P(sol) polarization free energy of solvation -35.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds