Wall clock time and date at job start Tue Mar 31 2020 20:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34170 * 127.02383 * 2 1 4 4 O 1.34222 * 109.12675 * 179.83573 * 3 2 1 5 5 C 1.33654 * 110.90333 * 0.44769 * 4 3 2 6 6 C 1.36410 * 108.39863 * 359.73144 * 5 4 3 7 7 C 1.47385 * 127.19311 * 179.97438 * 6 5 4 8 8 O 1.21616 * 119.99705 * 149.45419 * 7 6 5 9 9 N 1.34770 * 120.00063 * 329.45624 * 7 6 5 10 10 C 1.46505 * 120.00098 * 4.29189 * 9 7 6 11 11 C 1.46501 * 120.00280 * 184.29046 * 9 7 6 12 12 C 1.52997 * 109.47264 * 90.00040 * 11 9 7 13 13 C 1.52998 * 109.47395 * 180.02562 * 12 11 9 14 14 N 1.46890 * 109.47530 * 179.97438 * 13 12 11 15 15 C 1.46894 * 111.00247 * 66.04285 * 14 13 12 16 16 C 1.46904 * 111.00280 * 189.99985 * 14 13 12 17 17 C 1.50706 * 109.47184 * 169.99990 * 16 14 13 18 18 O 1.21290 * 119.99766 * 359.97438 * 17 16 14 19 19 N 1.34774 * 119.99795 * 180.02562 * 17 16 14 20 20 C 1.37092 * 119.99867 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00360 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00323 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99654 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00673 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47223 * 89.99851 * 24 22 20 26 26 H 1.48500 * 109.47681 * 210.00382 * 24 22 20 27 27 H 1.48510 * 109.46583 * 330.00312 * 24 22 20 28 28 H 1.08992 * 109.47304 * 269.68648 * 1 2 3 29 29 H 1.09000 * 109.46933 * 149.68420 * 1 2 3 30 30 H 1.09005 * 109.46682 * 29.68981 * 1 2 3 31 31 H 1.08002 * 125.44074 * 0.02562 * 3 2 1 32 32 H 1.08007 * 125.79960 * 179.73460 * 5 4 3 33 33 H 1.08991 * 109.47273 * 95.67375 * 10 9 7 34 34 H 1.08997 * 109.47091 * 215.67875 * 10 9 7 35 35 H 1.09007 * 109.46645 * 335.67192 * 10 9 7 36 36 H 1.09001 * 109.47138 * 210.00381 * 11 9 7 37 37 H 1.09001 * 109.47017 * 329.99917 * 11 9 7 38 38 H 1.09000 * 109.46862 * 299.99972 * 12 11 9 39 39 H 1.09001 * 109.47204 * 59.99991 * 12 11 9 40 40 H 1.09001 * 109.46784 * 300.00204 * 13 12 11 41 41 H 1.09001 * 109.47240 * 59.99660 * 13 12 11 42 42 H 1.09001 * 109.47298 * 60.00027 * 15 14 13 43 43 H 1.09003 * 109.47602 * 180.02562 * 15 14 13 44 44 H 1.09005 * 109.47489 * 300.00356 * 15 14 13 45 45 H 1.08999 * 109.46867 * 289.99849 * 16 14 13 46 46 H 1.08997 * 109.47257 * 49.99874 * 16 14 13 47 47 H 0.96996 * 119.99831 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00193 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6587 0.0036 5 6 3.6623 -0.6760 -0.0037 6 6 2.3923 -1.1738 -0.0064 7 6 1.9913 -2.5920 -0.0147 8 8 0.9531 -2.9335 0.5188 9 7 2.7752 -3.5105 -0.6133 10 6 4.0700 -3.1153 -1.1733 11 6 2.3325 -4.9040 -0.7041 12 6 1.5450 -5.1056 -2.0002 13 6 1.0821 -6.5608 -2.0948 14 7 0.3255 -6.7542 -3.3389 15 6 1.1915 -6.5859 -4.5134 16 6 -0.3345 -8.0666 -3.3551 17 6 -1.2905 -8.1337 -4.5182 18 8 -1.4106 -7.1818 -5.2602 19 7 -2.0127 -9.2511 -4.7331 20 6 -2.8828 -9.3120 -5.7908 21 1 -2.9898 -8.4645 -6.4516 22 6 -3.6270 -10.4642 -6.0128 23 7 -3.4973 -11.4953 -5.2085 24 14 -4.8120 -10.5476 -7.4544 25 1 -4.1030 -11.0741 -8.6482 26 1 -5.9435 -11.4471 -7.1139 27 1 -5.3317 -9.1875 -7.7472 28 1 -0.3633 -0.0056 1.0276 29 1 -0.3633 -0.8871 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9895 2.1010 0.0004 32 1 4.5703 -1.2609 -0.0068 33 1 4.8566 -3.3141 -0.4455 34 1 4.2626 -3.6863 -2.0816 35 1 4.0541 -2.0512 -1.4097 36 1 3.2014 -5.5622 -0.7008 37 1 1.6954 -5.1392 0.1485 38 1 0.6761 -4.4474 -2.0035 39 1 2.1821 -4.8705 -2.8528 40 1 1.9508 -7.2193 -2.0913 41 1 0.4449 -6.7956 -1.2422 42 1 1.9984 -7.3179 -4.4778 43 1 0.6060 -6.7340 -5.4208 44 1 1.6128 -5.5806 -4.5132 45 1 0.4167 -8.8498 -3.4566 46 1 -0.8839 -8.2085 -2.4245 47 1 -1.9169 -10.0122 -4.1395 48 1 -4.0171 -12.2995 -5.3632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755040835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:35 Heat of formation + Delta-G solvation = -64.927535 kcal Electronic energy + Delta-G solvation = -28497.355325 eV Core-core repulsion = 24360.774643 eV Total energy + Delta-G solvation = -4136.580682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.56206 -40.77304 -40.35548 -38.25133 -36.81890 -35.89092 -34.88849 -33.52347 -33.25013 -31.37974 -29.40576 -28.35228 -28.02931 -27.48175 -26.65067 -24.82999 -23.14514 -21.88369 -21.60430 -20.98907 -20.31032 -19.85436 -18.48161 -17.88769 -17.53216 -17.11489 -17.03517 -16.66353 -16.59894 -16.46922 -16.01740 -15.81894 -15.52869 -15.19747 -15.03121 -14.71651 -14.50009 -14.28067 -14.09318 -13.85939 -13.75682 -13.49954 -13.49199 -13.18367 -13.04163 -12.93153 -12.80084 -12.71659 -12.53007 -12.48650 -12.39986 -12.34733 -12.12611 -11.54805 -11.46179 -11.13031 -10.52817 -10.29657 -10.00480 -9.72626 -9.59613 -9.17618 -8.46756 -5.95446 0.41284 1.06388 1.37186 1.40595 1.53696 1.78433 2.05021 2.07622 2.23926 2.28558 2.80019 3.19812 3.42112 3.50670 3.63505 3.86812 3.97073 4.09748 4.14895 4.22621 4.28426 4.35629 4.39376 4.45178 4.47941 4.52882 4.57161 4.60922 4.64631 4.69423 4.73017 4.80315 4.86970 4.90443 4.99059 5.03102 5.09472 5.15993 5.27934 5.40704 5.43427 5.52762 5.89109 5.99927 6.08366 6.24776 6.31628 6.60862 7.10607 7.12848 7.56243 8.12569 8.70684 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021635 B = 0.001790 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.888990 B =15642.118968 C =16205.062305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.173 4.173 3 C -0.027 4.027 4 O -0.173 6.173 5 C 0.036 3.964 6 C -0.267 4.267 7 C 0.576 3.424 8 O -0.581 6.581 9 N -0.609 5.609 10 C 0.049 3.951 11 C 0.122 3.878 12 C -0.117 4.117 13 C 0.062 3.938 14 N -0.547 5.547 15 C 0.029 3.971 16 C 0.058 3.942 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.243 0.757 32 H 0.255 0.745 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.035 0.965 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.794 19.793 13.137 32.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.175 4.175 3 C -0.093 4.093 4 O -0.068 6.068 5 C -0.034 4.034 6 C -0.272 4.272 7 C 0.366 3.634 8 O -0.462 6.462 9 N -0.340 5.340 10 C -0.092 4.092 11 C -0.001 4.001 12 C -0.156 4.156 13 C -0.066 4.066 14 N -0.271 5.271 15 C -0.118 4.118 16 C -0.073 4.073 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.199 1.199 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.259 0.741 32 H 0.271 0.729 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.123 0.877 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.975 20.599 12.900 32.105 hybrid contribution -0.696 -1.516 -0.449 1.728 sum 20.280 19.083 12.450 30.503 Atomic orbital electron populations 1.20109 0.88917 1.02404 1.02288 1.21660 0.97523 0.91439 1.06886 1.24291 0.78949 1.00506 1.05517 1.83847 1.29727 1.22584 1.70632 1.25445 0.98869 0.80809 0.98229 1.21464 0.95317 0.93454 1.16951 1.17779 0.82922 0.85032 0.77638 1.90771 1.26469 1.81787 1.47155 1.47786 1.20539 1.08756 1.56939 1.22596 0.82902 1.03053 1.00631 1.21442 1.00209 0.81255 0.97186 1.21785 0.99491 0.95880 0.98463 1.22073 0.96882 0.96484 0.91126 1.61450 1.32556 1.29570 1.03541 1.22405 0.94720 1.01237 0.93485 1.21728 0.96688 0.91469 0.97377 1.20817 0.84844 0.83061 0.88534 1.90458 1.70418 1.38043 1.51276 1.41935 1.37223 1.14659 1.27398 1.19645 1.18795 1.01069 1.06681 0.90435 1.26051 0.99718 0.94356 1.01287 1.69675 1.42624 1.04939 1.38910 0.84919 0.77576 0.78136 0.77639 1.19477 1.19497 1.19950 0.91388 0.94046 0.89150 0.74103 0.72947 0.88948 0.89414 0.89257 0.86748 0.91349 0.94548 0.90838 0.92220 0.90687 0.94661 0.92984 0.90543 0.91052 0.87674 0.77013 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.04 71.24 0.72 -0.90 16 2 C -0.17 -3.34 6.37 -18.49 -0.12 -3.46 16 3 C -0.03 -0.33 11.96 66.89 0.80 0.47 16 4 O -0.17 -2.10 10.52 4.39 0.05 -2.05 16 5 C 0.04 0.41 9.73 67.39 0.66 1.06 16 6 C -0.27 -5.30 5.78 -18.99 -0.11 -5.41 16 7 C 0.58 14.38 7.61 86.65 0.66 15.04 16 8 O -0.58 -20.05 16.00 -4.08 -0.07 -20.11 16 9 N -0.61 -10.76 2.87 -850.71 -2.44 -13.20 16 10 C 0.05 0.36 9.11 127.77 1.16 1.52 16 11 C 0.12 2.22 5.47 86.38 0.47 2.69 16 12 C -0.12 -2.72 5.46 30.59 0.17 -2.55 16 13 C 0.06 1.54 4.96 86.30 0.43 1.96 16 14 N -0.55 -18.70 4.50 -927.07 -4.17 -22.87 16 15 C 0.03 0.96 8.96 127.69 1.14 2.10 16 16 C 0.06 2.13 5.45 85.56 0.47 2.60 16 17 C 0.44 21.83 7.47 87.66 0.66 22.49 16 18 O -0.62 -35.33 13.91 -3.06 -0.04 -35.37 16 19 N -0.57 -30.44 5.29 -306.99 -1.62 -32.06 16 20 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 23 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 24 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.08 7.86 -2.39 -0.02 1.07 16 30 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.24 0.95 8.06 -2.91 -0.02 0.92 16 32 H 0.26 0.52 5.95 -2.91 -0.02 0.51 16 33 H 0.09 0.14 7.92 -2.39 -0.02 0.12 16 34 H 0.09 0.50 8.11 -2.39 -0.02 0.48 16 35 H 0.09 0.54 4.62 -2.38 -0.01 0.53 16 36 H 0.11 1.26 8.07 -2.39 -0.02 1.24 16 37 H 0.07 1.55 7.37 -2.39 -0.02 1.53 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.55 6.55 -2.39 -0.02 1.53 16 40 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 41 H 0.07 1.86 7.93 -2.39 -0.02 1.84 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.05 2.16 5.83 -2.39 -0.01 2.15 16 44 H 0.08 2.17 6.47 -2.38 -0.02 2.15 16 45 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 46 H 0.11 3.47 7.93 -2.39 -0.02 3.45 16 47 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 48 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -83.87 395.42 2.64 -81.22 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.25 Total: 30.10 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 8.38 Total: 18.73 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -7.96 Total: -118.42 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -0.06 Total: -57.54 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -83.87 2.64 -81.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755040835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.296 kcal (2) G-P(sol) polarization free energy of solvation -83.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds