Wall clock time and date at job start Tue Mar 31 2020 20:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34174 * 127.02462 * 2 1 4 4 O 1.34212 * 109.12908 * 180.26885 * 3 2 1 5 5 C 1.33659 * 110.90225 * 359.73259 * 4 3 2 6 6 C 1.50703 * 125.79583 * 179.97438 * 5 4 3 7 7 C 1.36410 * 108.39756 * 0.02562 * 5 4 3 8 8 C 1.47386 * 127.19016 * 179.97438 * 7 5 4 9 9 O 1.21610 * 119.99823 * 90.02252 * 8 7 5 10 10 N 1.34773 * 119.99893 * 269.75150 * 8 7 5 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47035 * 34.99295 * 11 10 8 13 13 C 1.53000 * 109.46726 * 274.99647 * 11 10 8 14 14 C 1.52995 * 109.47011 * 154.99680 * 11 10 8 15 15 H 1.08998 * 109.47383 * 294.99368 * 14 11 10 16 16 C 1.52999 * 109.47571 * 55.00175 * 14 11 10 17 17 N 1.46904 * 109.46930 * 174.99574 * 14 11 10 18 18 C 1.46899 * 110.99947 * 154.99846 * 17 14 11 19 19 C 1.50700 * 109.47176 * 180.02562 * 18 17 14 20 20 O 1.21297 * 119.99951 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00100 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99984 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00205 * 359.97438 * 22 21 19 24 24 C 1.38959 * 119.99851 * 180.02562 * 22 21 19 25 25 N 1.31405 * 119.99935 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 119.99690 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46973 * 90.00164 * 26 24 22 28 28 H 1.48500 * 109.47007 * 209.99881 * 26 24 22 29 29 H 1.48499 * 109.47633 * 330.00166 * 26 24 22 30 30 H 1.09000 * 109.47016 * 270.15569 * 1 2 3 31 31 H 1.09004 * 109.46841 * 30.15976 * 1 2 3 32 32 H 1.09000 * 109.46665 * 150.15442 * 1 2 3 33 33 H 1.08008 * 125.43598 * 0.02562 * 3 2 1 34 34 H 1.08992 * 109.47243 * 270.04459 * 6 5 4 35 35 H 1.09000 * 109.46997 * 30.04976 * 6 5 4 36 36 H 1.09005 * 109.46532 * 150.04645 * 6 5 4 37 37 H 0.97004 * 120.00018 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47500 * 299.99755 * 13 11 10 39 39 H 1.09005 * 109.47359 * 59.99951 * 13 11 10 40 40 H 1.09002 * 109.46979 * 179.97438 * 13 11 10 41 41 H 1.08998 * 109.47426 * 59.99219 * 16 14 11 42 42 H 1.08989 * 109.47690 * 179.97438 * 16 14 11 43 43 H 1.09007 * 109.46960 * 300.00125 * 16 14 11 44 44 H 1.00903 * 110.99679 * 31.05041 * 17 14 11 45 45 H 1.08995 * 109.47236 * 300.00197 * 18 17 14 46 46 H 1.08996 * 109.46963 * 60.00290 * 18 17 14 47 47 H 0.97000 * 120.00174 * 0.02562 * 21 19 18 48 48 H 0.97002 * 120.00383 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6588 -0.0059 5 6 3.6623 -0.6759 -0.0042 6 6 4.9292 -1.4921 -0.0099 7 6 2.3923 -1.1738 0.0026 8 6 1.9914 -2.5920 0.0063 9 8 1.8307 -3.1758 1.0610 10 7 1.7975 -3.2405 -1.1592 11 6 1.3984 -4.6501 -1.1556 12 1 0.7399 -4.8391 -0.3079 13 6 2.6433 -5.5322 -1.0409 14 6 0.6613 -4.9748 -2.4564 15 1 -0.2709 -4.4114 -2.4961 16 6 1.5396 -4.5925 -3.6494 17 7 0.3667 -6.4131 -2.5064 18 6 -0.7932 -6.6833 -3.3663 19 6 -1.0649 -8.1654 -3.3924 20 8 -0.3617 -8.9221 -2.7567 21 7 -2.0891 -8.6500 -4.1221 22 6 -2.3365 -9.9983 -4.1453 23 1 -1.7104 -10.6721 -3.5793 24 6 -3.3923 -10.4981 -4.8981 25 7 -4.1538 -9.6783 -5.5872 26 14 -3.7289 -12.3351 -4.9304 27 1 -4.6694 -12.6853 -3.8357 28 1 -4.3301 -12.7053 -6.2368 29 1 -2.4551 -13.0752 -4.7441 30 1 -0.3633 0.0028 1.0277 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3633 -0.8914 -0.5114 33 1 1.9895 2.1011 0.0004 34 1 5.2293 -1.6898 -1.0389 35 1 5.7192 -0.9401 0.4993 36 1 4.7552 -2.4365 0.5057 37 1 1.9214 -2.7736 -2.0004 38 1 3.3019 -5.3432 -1.8887 39 1 3.1684 -5.3009 -0.1142 40 1 2.3463 -6.5810 -1.0378 41 1 2.4718 -5.1559 -3.6097 42 1 1.0147 -4.8242 -4.5761 43 1 1.7583 -3.5252 -3.6124 44 1 0.2240 -6.7853 -1.5794 45 1 -1.6659 -6.1612 -2.9740 46 1 -0.5850 -6.3339 -4.3776 47 1 -2.6512 -8.0449 -4.6307 48 1 -4.8910 -10.0270 -6.1124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755234768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:01 Heat of formation + Delta-G solvation = -64.843405 kcal Electronic energy + Delta-G solvation = -28855.438403 eV Core-core repulsion = 24718.861369 eV Total energy + Delta-G solvation = -4136.577034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.90580 -39.97805 -38.43565 -37.28909 -34.46804 -34.26604 -33.76800 -32.90638 -31.30439 -30.85791 -29.21822 -28.43083 -26.86062 -26.57011 -24.83094 -24.07512 -22.73310 -20.44421 -20.04257 -19.78791 -19.31284 -18.17990 -17.87927 -16.80591 -16.43434 -16.22114 -15.80200 -15.56886 -15.16617 -14.91818 -14.53961 -14.42827 -14.00227 -13.76797 -13.75124 -13.65490 -13.63571 -13.30771 -13.16502 -13.04272 -12.81296 -12.73538 -12.48297 -12.22579 -12.04987 -11.81399 -11.70966 -11.60361 -11.44362 -11.10154 -10.92550 -10.71890 -10.39410 -10.27683 -10.21649 -9.75886 -9.51086 -9.27871 -8.84447 -8.47252 -8.12494 -7.96526 -6.42025 -3.82745 1.25735 1.86455 2.31659 2.47213 3.00947 3.17920 3.26627 3.32762 3.90381 4.07089 4.10805 4.32198 4.41099 4.54786 4.61962 4.74969 4.84799 4.90502 5.00928 5.13096 5.13586 5.20157 5.24892 5.28410 5.29063 5.40885 5.49612 5.54233 5.56256 5.59200 5.73771 5.76646 5.78275 5.92186 5.93481 5.95596 6.03688 6.15704 6.26783 6.36051 6.42024 6.69557 7.14402 7.28912 7.55110 7.59208 7.99815 8.06014 8.60789 9.17657 9.53914 10.05240 10.75715 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.001886 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.483998 B =14838.948744 C =15288.909937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.148 4.148 3 C -0.041 4.041 4 O -0.173 6.173 5 C 0.044 3.956 6 C -0.082 4.082 7 C -0.230 4.230 8 C 0.593 3.407 9 O -0.530 6.530 10 N -0.713 5.713 11 C 0.140 3.860 12 H 0.087 0.913 13 C -0.157 4.157 14 C 0.077 3.923 15 H 0.047 0.953 16 C -0.144 4.144 17 N -0.656 5.656 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.207 0.793 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.351 0.649 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.022 24.050 6.596 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C -0.107 4.107 4 O -0.070 6.070 5 C -0.007 4.007 6 C -0.138 4.138 7 C -0.235 4.235 8 C 0.378 3.622 9 O -0.406 6.406 10 N -0.366 5.366 11 C 0.036 3.964 12 H 0.105 0.895 13 C -0.215 4.215 14 C -0.034 4.034 15 H 0.065 0.935 16 C -0.202 4.202 17 N -0.290 5.290 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.224 0.776 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.172 0.828 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.900 23.098 7.163 27.894 hybrid contribution -1.601 0.107 -0.312 1.634 sum 12.300 23.206 6.851 27.142 Atomic orbital electron populations 1.20208 0.88522 1.02921 1.02711 1.21364 0.96869 0.90525 1.06185 1.23631 0.79568 0.99559 1.07907 1.83725 1.29617 1.21876 1.71742 1.22547 0.96040 0.80814 1.01341 1.20465 0.91136 0.97981 1.04206 1.21038 0.93228 0.94001 1.15190 1.17280 0.76519 0.84484 0.83881 1.90825 1.50389 1.68141 1.31220 1.46187 1.69793 1.12214 1.08444 1.21126 0.97361 0.79855 0.98090 0.89459 1.22128 0.97017 1.00929 1.01466 1.21710 0.97437 0.90036 0.94205 0.93486 1.21881 1.00997 0.99384 0.97917 1.60200 1.40306 1.10836 1.17652 1.21733 0.91548 0.96191 0.98733 1.19779 0.83790 0.89033 0.84757 1.90529 1.49933 1.59082 1.47080 1.41861 1.27139 1.08570 1.42475 1.19707 1.12851 0.82922 1.27348 0.87899 1.25267 0.96063 1.00349 0.96325 1.69609 1.18836 1.35322 1.30577 0.85851 0.78762 0.82201 0.77442 1.20427 1.20941 1.19393 0.90912 0.91025 0.91368 0.77623 0.89239 0.89741 0.88949 0.76283 0.92075 0.92866 0.89875 0.91122 0.92007 0.93290 0.82807 0.93824 0.89532 0.77483 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.38 36.01 0.37 -0.28 16 2 C -0.15 -1.34 6.38 -102.49 -0.65 -1.99 16 3 C -0.04 -0.30 11.96 29.30 0.35 0.05 16 4 O -0.17 -1.52 10.52 7.64 0.08 -1.44 16 5 C 0.04 0.40 7.37 -34.97 -0.26 0.15 16 6 C -0.08 -0.52 10.24 36.01 0.37 -0.15 16 7 C -0.23 -2.43 6.07 -103.28 -0.63 -3.06 16 8 C 0.59 7.21 7.22 -12.54 -0.09 7.12 16 9 O -0.53 -8.53 16.77 5.27 0.09 -8.44 16 10 N -0.71 -7.15 4.99 -54.90 -0.27 -7.42 16 11 C 0.14 1.60 2.31 -67.93 -0.16 1.45 16 12 H 0.09 1.16 7.57 -51.93 -0.39 0.77 16 13 C -0.16 -1.83 9.01 37.16 0.33 -1.49 16 14 C 0.08 0.89 2.66 -67.71 -0.18 0.71 16 15 H 0.05 0.54 7.80 -51.93 -0.40 0.14 16 16 C -0.14 -1.46 8.93 37.16 0.33 -1.12 16 17 N -0.66 -10.04 5.14 -108.00 -0.55 -10.59 16 18 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 19 C 0.44 10.28 7.82 -10.99 -0.09 10.20 16 20 O -0.58 -15.64 15.78 5.54 0.09 -15.55 16 21 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 22 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 26 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.21 0.72 8.06 -52.48 -0.42 0.29 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.66 7.93 -51.93 -0.41 0.25 16 37 H 0.40 3.22 6.56 -40.82 -0.27 2.95 16 38 H 0.06 0.65 6.57 -51.93 -0.34 0.30 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.09 7.17 -51.93 -0.37 0.71 16 41 H 0.07 0.76 6.56 -51.93 -0.34 0.42 16 42 H 0.06 0.67 7.45 -51.94 -0.39 0.28 16 43 H 0.05 0.37 6.29 -51.93 -0.33 0.05 16 44 H 0.35 5.70 7.61 -39.29 -0.30 5.40 16 45 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 46 H 0.09 1.36 7.43 -51.93 -0.39 0.98 16 47 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -34.18 401.19 -6.59 -40.77 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -7.14 Total: 14.18 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.56 Total: 4.44 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.16 Total: -56.05 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: 0.26 Total: -25.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.18 -6.59 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755234768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.077 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds