Wall clock time and date at job start Tue Mar 31 2020 20:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34183 * 127.02910 * 2 1 4 4 O 1.34210 * 109.12546 * 180.26773 * 3 2 1 5 5 C 1.33650 * 110.91244 * 359.74542 * 4 3 2 6 6 C 1.50693 * 125.80426 * 179.97438 * 5 4 3 7 7 C 1.36419 * 108.39365 * 0.02562 * 5 4 3 8 8 C 1.47379 * 127.18994 * 179.97438 * 7 5 4 9 9 O 1.21616 * 119.99989 * 90.01920 * 8 7 5 10 10 N 1.34771 * 119.99950 * 270.02108 * 8 7 5 11 11 C 1.46505 * 120.00080 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47120 * 325.00068 * 11 10 8 13 13 C 1.53006 * 109.46997 * 84.99676 * 11 10 8 14 14 C 1.52999 * 109.47266 * 204.99535 * 11 10 8 15 15 H 1.09000 * 109.47486 * 300.00309 * 14 11 10 16 16 C 1.53006 * 109.46623 * 60.00137 * 14 11 10 17 17 N 1.46899 * 109.47248 * 179.97438 * 14 11 10 18 18 C 1.46897 * 111.00133 * 155.00600 * 17 14 11 19 19 C 1.50705 * 109.47250 * 180.02562 * 18 17 14 20 20 O 1.21290 * 119.99690 * 359.97438 * 19 18 17 21 21 N 1.34770 * 119.99724 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99768 * 179.97438 * 21 19 18 23 23 H 1.08008 * 120.00079 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00393 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99836 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00366 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47556 * 59.99993 * 26 24 22 28 28 H 1.48497 * 109.47459 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47105 * 300.00118 * 26 24 22 30 30 H 1.08998 * 109.47008 * 270.13399 * 1 2 3 31 31 H 1.09007 * 109.47245 * 30.12875 * 1 2 3 32 32 H 1.08994 * 109.47901 * 150.13244 * 1 2 3 33 33 H 1.07996 * 125.43377 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.47526 * 270.00763 * 6 5 4 35 35 H 1.09005 * 109.47067 * 30.00546 * 6 5 4 36 36 H 1.09001 * 109.47195 * 150.00287 * 6 5 4 37 37 H 0.97003 * 120.00401 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47261 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47377 * 300.00385 * 13 11 10 40 40 H 1.09000 * 109.46866 * 60.00236 * 13 11 10 41 41 H 1.09001 * 109.47002 * 179.97438 * 16 14 11 42 42 H 1.08993 * 109.46955 * 300.00075 * 16 14 11 43 43 H 1.09000 * 109.47050 * 59.99904 * 16 14 11 44 44 H 1.00901 * 110.99931 * 31.04927 * 17 14 11 45 45 H 1.09003 * 109.46826 * 299.99875 * 18 17 14 46 46 H 1.08993 * 109.47326 * 59.99934 * 18 17 14 47 47 H 0.96996 * 120.00663 * 359.97438 * 21 19 18 48 48 H 0.97000 * 120.00384 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5921 0.6586 -0.0059 5 6 3.6623 -0.6760 -0.0044 6 6 4.9290 -1.4922 -0.0102 7 6 2.3922 -1.1738 0.0022 8 6 1.9912 -2.5920 0.0055 9 8 1.8305 -3.1761 1.0601 10 7 1.8027 -3.2417 -1.1601 11 6 1.4047 -4.6517 -1.1569 12 1 1.8771 -5.1606 -0.3167 13 6 -0.1163 -4.7519 -1.0239 14 6 1.8466 -5.3094 -2.4657 15 1 1.3741 -4.8004 -3.3058 16 6 3.3676 -5.2091 -2.5986 17 7 1.4480 -6.7233 -2.4621 18 6 1.2985 -7.2315 -3.8322 19 6 0.8894 -8.6813 -3.7884 20 8 0.7377 -9.2366 -2.7208 21 7 0.6920 -9.3607 -4.9355 22 6 0.3203 -10.6797 -4.8956 23 1 0.1853 -11.1743 -3.9450 24 6 0.1163 -11.3802 -6.0782 25 7 0.2801 -10.7784 -7.2349 26 14 -0.3908 -13.1771 -6.0239 27 1 -1.6831 -13.3053 -5.3036 28 1 -0.5426 -13.6908 -7.4089 29 1 0.6506 -13.9642 -5.3159 30 1 -0.3633 0.0024 1.0276 31 1 -0.3634 0.8889 -0.5159 32 1 -0.3635 -0.8911 -0.5117 33 1 1.9896 2.1010 0.0004 34 1 5.2289 -1.6904 -1.0392 35 1 5.7193 -0.9402 0.4985 36 1 4.7552 -2.4364 0.5059 37 1 1.9305 -2.7758 -2.0013 38 1 -0.4125 -5.8008 -1.0219 39 1 -0.4312 -4.2833 -0.0915 40 1 -0.5888 -4.2429 -1.8640 41 1 3.6825 -5.6781 -3.5308 42 1 3.6636 -4.1602 -2.6010 43 1 3.8400 -5.7181 -1.7585 44 1 0.6004 -6.8587 -1.9317 45 1 0.5342 -6.6543 -4.3525 46 1 2.2473 -7.1372 -4.3603 47 1 0.8129 -8.9166 -5.7893 48 1 0.1381 -11.2674 -8.0605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755234769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:05 Heat of formation + Delta-G solvation = -66.429000 kcal Electronic energy + Delta-G solvation = -28862.551084 eV Core-core repulsion = 24725.905294 eV Total energy + Delta-G solvation = -4136.645790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.90778 -39.95920 -38.44176 -37.23191 -34.46851 -34.26544 -33.77834 -32.90937 -31.28561 -30.71355 -29.86527 -28.45897 -26.88170 -26.38668 -24.45692 -24.07939 -22.50370 -20.59916 -20.34048 -19.93448 -19.30628 -18.12534 -17.88467 -16.85065 -16.47295 -16.33218 -15.84378 -15.41970 -15.22002 -14.65705 -14.50977 -14.27101 -14.02562 -13.86576 -13.70693 -13.64830 -13.53908 -13.42574 -13.29417 -13.08563 -12.97157 -12.73532 -12.47354 -12.37893 -11.93501 -11.74542 -11.70833 -11.57160 -11.44687 -11.34111 -11.02723 -10.64713 -10.44411 -10.29069 -10.21244 -9.76224 -9.50411 -9.29923 -8.84489 -8.46613 -8.11494 -7.96661 -6.42106 -3.82924 1.25856 1.85814 2.31626 2.47153 2.98781 3.20190 3.25828 3.30508 3.90061 4.07662 4.10844 4.32563 4.40460 4.52814 4.62256 4.75541 4.82751 4.90630 5.02700 5.10062 5.14173 5.19620 5.24614 5.26392 5.30019 5.35277 5.47292 5.47775 5.55514 5.62492 5.65935 5.76313 5.77785 5.86259 5.94961 5.95492 6.02417 6.12104 6.21071 6.27679 6.33939 6.69586 7.16907 7.27115 7.54804 7.62270 7.99484 8.05654 8.60683 9.17412 9.53595 10.05082 10.75528 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.001861 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.071152 B =15038.798376 C =15282.401469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.148 4.148 3 C -0.041 4.041 4 O -0.173 6.173 5 C 0.046 3.954 6 C -0.082 4.082 7 C -0.230 4.230 8 C 0.595 3.405 9 O -0.528 6.528 10 N -0.711 5.711 11 C 0.140 3.860 12 H 0.101 0.899 13 C -0.171 4.171 14 C 0.078 3.922 15 H 0.046 0.954 16 C -0.140 4.140 17 N -0.660 5.660 18 C 0.052 3.948 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.207 0.793 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.400 0.600 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.352 0.648 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 26.256 8.450 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.150 4.150 3 C -0.107 4.107 4 O -0.070 6.070 5 C -0.006 4.006 6 C -0.139 4.139 7 C -0.235 4.235 8 C 0.380 3.620 9 O -0.404 6.404 10 N -0.363 5.363 11 C 0.035 3.965 12 H 0.119 0.881 13 C -0.229 4.229 14 C -0.033 4.033 15 H 0.064 0.936 16 C -0.198 4.198 17 N -0.296 5.296 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.223 0.777 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.235 0.765 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.174 0.826 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.795 25.295 9.804 27.740 hybrid contribution -1.195 0.064 -1.381 1.827 sum 4.600 25.359 8.423 27.114 Atomic orbital electron populations 1.20197 0.88575 1.02865 1.02670 1.21352 0.96832 0.90539 1.06240 1.23625 0.79592 0.99548 1.07926 1.83724 1.29606 1.21905 1.71716 1.22561 0.96062 0.80791 1.01209 1.20476 0.91122 0.98008 1.04257 1.21029 0.93206 0.93981 1.15276 1.17246 0.76401 0.84543 0.83820 1.90833 1.50458 1.67926 1.31167 1.46012 1.69830 1.12096 1.08368 1.21123 0.95278 0.80585 0.99475 0.88135 1.22264 0.95168 1.02991 1.02474 1.21730 0.96984 0.89328 0.95238 0.93563 1.21809 0.94489 1.00510 1.02958 1.60178 1.41619 1.14272 1.13566 1.21722 1.01036 0.95292 0.90057 1.19786 0.84688 0.87887 0.85075 1.90531 1.56553 1.70062 1.29477 1.41849 1.60136 1.11249 1.06762 1.19659 1.42710 0.85999 0.94532 0.87952 1.25264 0.97576 1.00479 0.94644 1.69603 1.49552 1.37724 0.97485 0.85909 0.79302 0.81913 0.77053 1.19915 1.20997 1.19870 0.90945 0.91086 0.91380 0.77660 0.89198 0.89730 0.88875 0.76538 0.90688 0.91675 0.92469 0.92248 0.92979 0.91679 0.82558 0.93841 0.89524 0.77475 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.38 36.00 0.37 -0.24 16 2 C -0.15 -1.30 6.38 -102.50 -0.65 -1.95 16 3 C -0.04 -0.30 11.96 29.30 0.35 0.05 16 4 O -0.17 -1.51 10.52 7.67 0.08 -1.43 16 5 C 0.05 0.41 7.37 -34.97 -0.26 0.15 16 6 C -0.08 -0.53 10.24 36.00 0.37 -0.16 16 7 C -0.23 -2.39 6.07 -103.27 -0.63 -3.01 16 8 C 0.59 7.09 7.22 -12.54 -0.09 6.99 16 9 O -0.53 -8.41 16.77 5.26 0.09 -8.33 16 10 N -0.71 -6.93 4.38 -54.89 -0.24 -7.17 16 11 C 0.14 1.59 2.29 -67.93 -0.16 1.44 16 12 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 13 C -0.17 -1.93 9.25 37.16 0.34 -1.58 16 14 C 0.08 0.91 2.28 -67.71 -0.15 0.75 16 15 H 0.05 0.49 7.80 -51.93 -0.41 0.09 16 16 C -0.14 -1.51 9.26 37.16 0.34 -1.17 16 17 N -0.66 -10.36 5.93 -107.99 -0.64 -11.00 16 18 C 0.05 0.89 5.97 -4.98 -0.03 0.86 16 19 C 0.44 10.31 7.82 -10.99 -0.09 10.22 16 20 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 21 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 22 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 23 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 26 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.68 7.93 -51.93 -0.41 0.27 16 37 H 0.40 3.04 8.37 -40.82 -0.34 2.70 16 38 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 42 H 0.05 0.44 7.44 -51.93 -0.39 0.05 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.35 5.75 5.87 -39.29 -0.23 5.52 16 45 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 46 H 0.09 1.37 7.43 -51.93 -0.39 0.99 16 47 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 404.96 15.07 6.10 6.10 Total: -1.00 -34.38 404.96 -6.72 -41.09 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -7.32 Total: 13.97 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.52 Total: 4.36 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.21 Total: -56.11 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: 0.26 Total: -25.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.38 -6.72 -41.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755234769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.335 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds