Wall clock time and date at job start Tue Mar 31 2020 20:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34183 * 127.02910 * 2 1 4 4 O 1.34210 * 109.12546 * 180.26773 * 3 2 1 5 5 C 1.33650 * 110.91244 * 359.74542 * 4 3 2 6 6 C 1.50693 * 125.80426 * 179.97438 * 5 4 3 7 7 C 1.36419 * 108.39365 * 0.02562 * 5 4 3 8 8 C 1.47379 * 127.18994 * 179.97438 * 7 5 4 9 9 O 1.21616 * 119.99989 * 90.01920 * 8 7 5 10 10 N 1.34771 * 119.99950 * 270.02108 * 8 7 5 11 11 C 1.46505 * 120.00080 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47120 * 325.00068 * 11 10 8 13 13 C 1.53006 * 109.46997 * 84.99676 * 11 10 8 14 14 C 1.52999 * 109.47266 * 204.99535 * 11 10 8 15 15 H 1.09000 * 109.47486 * 300.00309 * 14 11 10 16 16 C 1.53006 * 109.46623 * 60.00137 * 14 11 10 17 17 N 1.46899 * 109.47248 * 179.97438 * 14 11 10 18 18 C 1.46897 * 111.00133 * 155.00600 * 17 14 11 19 19 C 1.50705 * 109.47250 * 180.02562 * 18 17 14 20 20 O 1.21290 * 119.99690 * 359.97438 * 19 18 17 21 21 N 1.34770 * 119.99724 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99768 * 179.97438 * 21 19 18 23 23 H 1.08008 * 120.00079 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00393 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99836 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00366 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47556 * 59.99993 * 26 24 22 28 28 H 1.48497 * 109.47459 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47105 * 300.00118 * 26 24 22 30 30 H 1.08998 * 109.47008 * 270.13399 * 1 2 3 31 31 H 1.09007 * 109.47245 * 30.12875 * 1 2 3 32 32 H 1.08994 * 109.47901 * 150.13244 * 1 2 3 33 33 H 1.07996 * 125.43377 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.47526 * 270.00763 * 6 5 4 35 35 H 1.09005 * 109.47067 * 30.00546 * 6 5 4 36 36 H 1.09001 * 109.47195 * 150.00287 * 6 5 4 37 37 H 0.97003 * 120.00401 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47261 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47377 * 300.00385 * 13 11 10 40 40 H 1.09000 * 109.46866 * 60.00236 * 13 11 10 41 41 H 1.09001 * 109.47002 * 179.97438 * 16 14 11 42 42 H 1.08993 * 109.46955 * 300.00075 * 16 14 11 43 43 H 1.09000 * 109.47050 * 59.99904 * 16 14 11 44 44 H 1.00901 * 110.99931 * 31.04927 * 17 14 11 45 45 H 1.09003 * 109.46826 * 299.99875 * 18 17 14 46 46 H 1.08993 * 109.47326 * 59.99934 * 18 17 14 47 47 H 0.96996 * 120.00663 * 359.97438 * 21 19 18 48 48 H 0.97000 * 120.00384 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5921 0.6586 -0.0059 5 6 3.6623 -0.6760 -0.0044 6 6 4.9290 -1.4922 -0.0102 7 6 2.3922 -1.1738 0.0022 8 6 1.9912 -2.5920 0.0055 9 8 1.8305 -3.1761 1.0601 10 7 1.8027 -3.2417 -1.1601 11 6 1.4047 -4.6517 -1.1569 12 1 1.8771 -5.1606 -0.3167 13 6 -0.1163 -4.7519 -1.0239 14 6 1.8466 -5.3094 -2.4657 15 1 1.3741 -4.8004 -3.3058 16 6 3.3676 -5.2091 -2.5986 17 7 1.4480 -6.7233 -2.4621 18 6 1.2985 -7.2315 -3.8322 19 6 0.8894 -8.6813 -3.7884 20 8 0.7377 -9.2366 -2.7208 21 7 0.6920 -9.3607 -4.9355 22 6 0.3203 -10.6797 -4.8956 23 1 0.1853 -11.1743 -3.9450 24 6 0.1163 -11.3802 -6.0782 25 7 0.2801 -10.7784 -7.2349 26 14 -0.3908 -13.1771 -6.0239 27 1 -1.6831 -13.3053 -5.3036 28 1 -0.5426 -13.6908 -7.4089 29 1 0.6506 -13.9642 -5.3159 30 1 -0.3633 0.0024 1.0276 31 1 -0.3634 0.8889 -0.5159 32 1 -0.3635 -0.8911 -0.5117 33 1 1.9896 2.1010 0.0004 34 1 5.2289 -1.6904 -1.0392 35 1 5.7193 -0.9402 0.4985 36 1 4.7552 -2.4364 0.5059 37 1 1.9305 -2.7758 -2.0013 38 1 -0.4125 -5.8008 -1.0219 39 1 -0.4312 -4.2833 -0.0915 40 1 -0.5888 -4.2429 -1.8640 41 1 3.6825 -5.6781 -3.5308 42 1 3.6636 -4.1602 -2.6010 43 1 3.8400 -5.7181 -1.7585 44 1 0.6004 -6.8587 -1.9317 45 1 0.5342 -6.6543 -4.3525 46 1 2.2473 -7.1372 -4.3603 47 1 0.8129 -8.9166 -5.7893 48 1 0.1381 -11.2674 -8.0605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755234769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:04 Heat of formation + Delta-G solvation = -92.042380 kcal Electronic energy + Delta-G solvation = -28863.661764 eV Core-core repulsion = 24725.905294 eV Total energy + Delta-G solvation = -4137.756470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.53991 -40.94544 -40.14849 -38.47325 -36.04597 -35.35997 -34.89954 -33.53097 -33.26424 -31.82891 -30.83213 -29.07297 -28.03959 -27.40466 -25.92033 -25.19107 -23.45562 -21.57584 -21.10545 -21.08306 -20.63035 -19.92438 -18.88383 -17.82993 -17.69264 -17.17979 -17.06608 -16.63016 -16.41143 -16.09465 -15.90576 -15.44000 -15.34300 -15.03376 -14.72975 -14.53901 -14.26575 -14.18292 -14.15202 -14.05186 -13.78355 -13.59782 -13.52691 -13.47113 -13.29134 -13.15136 -12.89951 -12.69408 -12.62786 -12.42787 -12.35589 -12.28251 -12.12226 -11.65076 -11.49871 -11.27385 -10.46042 -10.33914 -10.24724 -10.01151 -9.44114 -9.36212 -8.46229 -5.94751 0.61921 1.22843 1.40028 1.40333 1.42118 1.52758 1.84447 2.05804 2.14566 2.30869 2.97532 3.21093 3.49786 3.51970 3.54951 3.75223 3.91232 3.99281 4.14764 4.20486 4.30935 4.36459 4.40826 4.46335 4.54532 4.58720 4.59898 4.62638 4.69576 4.73638 4.76256 4.84955 4.92825 4.97372 4.99676 5.02085 5.16313 5.20276 5.34150 5.39249 5.41692 5.46457 5.89478 6.07584 6.10176 6.36315 6.43381 6.60769 7.11816 7.13179 7.56850 8.12483 8.70802 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.001861 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.071152 B =15038.798376 C =15282.401469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 C -0.029 4.029 4 O -0.178 6.178 5 C 0.045 3.955 6 C -0.083 4.083 7 C -0.259 4.259 8 C 0.600 3.400 9 O -0.577 6.577 10 N -0.694 5.694 11 C 0.148 3.852 12 H 0.073 0.927 13 C -0.166 4.166 14 C 0.084 3.916 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.678 5.678 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.273 1.273 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.245 0.755 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.415 0.585 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.346 0.654 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 28.382 6.997 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.172 4.172 3 C -0.094 4.094 4 O -0.074 6.074 5 C -0.007 4.007 6 C -0.139 4.139 7 C -0.263 4.263 8 C 0.386 3.614 9 O -0.456 6.456 10 N -0.345 5.345 11 C 0.043 3.957 12 H 0.091 0.909 13 C -0.224 4.224 14 C -0.026 4.026 15 H 0.089 0.911 16 C -0.195 4.195 17 N -0.314 5.314 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.198 1.198 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.261 0.739 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.168 0.832 45 H 0.089 0.911 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.202 27.464 8.297 29.352 hybrid contribution -1.296 -0.521 -0.888 1.655 sum 4.906 26.943 7.408 28.370 Atomic orbital electron populations 1.20213 0.87767 1.03563 1.02534 1.21621 0.97649 0.90422 1.07477 1.24351 0.78632 1.00777 1.05686 1.83750 1.30458 1.21596 1.71584 1.22922 0.96377 0.81126 1.00295 1.20574 0.90601 0.97222 1.05515 1.21057 0.94515 0.93356 1.17396 1.17493 0.75368 0.85131 0.83375 1.90806 1.52780 1.69132 1.32917 1.45809 1.68812 1.11283 1.08631 1.20885 0.95103 0.81200 0.98490 0.90908 1.22201 0.95150 1.02432 1.02614 1.21757 0.97704 0.87239 0.95860 0.91140 1.21812 0.93496 1.02103 1.02134 1.60174 1.41528 1.17013 1.12688 1.21581 1.02570 0.90923 0.91443 1.20898 0.82702 0.90184 0.83808 1.90501 1.57890 1.71772 1.30919 1.41909 1.60700 1.10752 1.07574 1.19618 1.45003 0.87655 0.94108 0.90425 1.26020 0.96949 1.04252 0.94027 1.69659 1.49353 1.39105 0.97859 0.85004 0.78755 0.77048 0.77632 1.19736 1.19433 1.19848 0.91517 0.88511 0.92534 0.73892 0.87266 0.88199 0.90192 0.74832 0.91665 0.92834 0.90695 0.92247 0.90260 0.93442 0.83243 0.91111 0.87567 0.76888 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.38 71.23 0.74 -0.35 16 2 C -0.17 -2.75 6.38 -18.49 -0.12 -2.86 16 3 C -0.03 -0.35 11.96 66.89 0.80 0.45 16 4 O -0.18 -2.73 10.52 4.53 0.05 -2.68 16 5 C 0.04 0.75 7.37 25.26 0.19 0.94 16 6 C -0.08 -0.96 10.24 71.23 0.73 -0.23 16 7 C -0.26 -5.19 6.07 -18.99 -0.12 -5.30 16 8 C 0.60 14.37 7.22 86.65 0.63 14.99 16 9 O -0.58 -19.21 16.77 -4.08 -0.07 -19.28 16 10 N -0.69 -12.90 4.38 -445.83 -1.95 -14.85 16 11 C 0.15 3.34 2.29 44.99 0.10 3.44 16 12 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 13 C -0.17 -3.73 9.25 71.98 0.67 -3.06 16 14 C 0.08 1.82 2.28 44.92 0.10 1.93 16 15 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 16 C -0.14 -2.72 9.26 71.98 0.67 -2.06 16 17 N -0.68 -20.80 5.93 -495.57 -2.94 -23.74 16 18 C 0.07 2.20 5.97 85.56 0.51 2.71 16 19 C 0.44 20.58 7.82 87.66 0.69 21.26 16 20 O -0.62 -34.75 15.78 -3.06 -0.05 -34.80 16 21 N -0.57 -29.09 5.29 -306.98 -1.62 -30.71 16 22 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 25 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 26 Si 0.99 42.94 29.55 68.60 2.03 44.96 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 29 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.25 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.08 1.15 7.93 -2.39 -0.02 1.13 16 37 H 0.41 5.42 8.37 -92.71 -0.78 4.64 16 38 H 0.06 1.61 6.21 -2.39 -0.01 1.59 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.19 7.45 -2.39 -0.02 1.18 16 42 H 0.08 1.12 7.44 -2.39 -0.02 1.10 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.35 11.36 5.87 -89.69 -0.53 10.83 16 45 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 46 H 0.11 3.11 7.43 -2.39 -0.02 3.10 16 47 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 48 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -76.84 404.96 1.56 -75.29 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -1.03 Total: 41.20 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 6.86 Total: 13.50 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -6.23 Total: -118.20 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -0.07 Total: -56.76 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -76.84 1.56 -75.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755234769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.757 kcal (2) G-P(sol) polarization free energy of solvation -76.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds