Wall clock time and date at job start Tue Mar 31 2020 20:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34173 * 127.02705 * 2 1 4 4 O 1.34216 * 109.12708 * 180.02562 * 3 2 1 5 5 C 1.33646 * 110.90761 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.80214 * 179.97438 * 5 4 3 7 7 C 1.36415 * 108.39797 * 359.97438 * 5 4 3 8 8 C 1.47382 * 127.19393 * 179.73694 * 7 5 4 9 9 O 1.21619 * 120.00008 * 90.02284 * 8 7 5 10 10 N 1.34775 * 120.00094 * 270.02936 * 8 7 5 11 11 C 1.46497 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47471 * 324.99855 * 11 10 8 13 13 C 1.53005 * 109.47504 * 84.99912 * 11 10 8 14 14 C 1.53004 * 109.46936 * 204.99560 * 11 10 8 15 15 H 1.08996 * 109.46871 * 65.00731 * 14 11 10 16 16 C 1.52994 * 109.47351 * 304.99983 * 14 11 10 17 17 N 1.46901 * 109.46854 * 185.00167 * 14 11 10 18 18 C 1.46901 * 110.99853 * 205.00116 * 17 14 11 19 19 C 1.50703 * 109.47513 * 180.02562 * 18 17 14 20 20 O 1.21297 * 119.99450 * 359.97438 * 19 18 17 21 21 N 1.34766 * 120.00235 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00187 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99663 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00345 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99919 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00154 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47054 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47358 * 120.00147 * 26 24 22 29 29 H 1.48500 * 109.46890 * 240.00113 * 26 24 22 30 30 H 1.09005 * 109.46568 * 269.95144 * 1 2 3 31 31 H 1.08999 * 109.47358 * 29.94691 * 1 2 3 32 32 H 1.08997 * 109.47326 * 149.95663 * 1 2 3 33 33 H 1.08002 * 125.43114 * 0.04261 * 3 2 1 34 34 H 1.09002 * 109.46819 * 270.04067 * 6 5 4 35 35 H 1.08998 * 109.46761 * 30.04078 * 6 5 4 36 36 H 1.09000 * 109.47129 * 150.04080 * 6 5 4 37 37 H 0.96997 * 120.00100 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.47589 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.46831 * 300.00038 * 13 11 10 40 40 H 1.09003 * 109.46856 * 59.99086 * 13 11 10 41 41 H 1.09006 * 109.47219 * 300.00332 * 16 14 11 42 42 H 1.09004 * 109.47214 * 59.99817 * 16 14 11 43 43 H 1.09000 * 109.47516 * 179.97438 * 16 14 11 44 44 H 1.00900 * 111.00047 * 328.95162 * 17 14 11 45 45 H 1.09003 * 109.47351 * 300.00254 * 18 17 14 46 46 H 1.09001 * 109.47219 * 59.99753 * 18 17 14 47 47 H 0.97003 * 120.00370 * 359.97438 * 21 19 18 48 48 H 0.97005 * 120.00093 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6586 -0.0006 5 6 3.6623 -0.6760 -0.0015 6 6 4.9292 -1.4922 -0.0029 7 6 2.3923 -1.1738 -0.0010 8 6 1.9912 -2.5921 -0.0071 9 8 1.8279 -3.1823 1.0437 10 7 1.8057 -3.2349 -1.1770 11 6 1.4077 -4.6447 -1.1830 12 1 1.8779 -5.1587 -0.3447 13 6 -0.1136 -4.7458 -1.0546 14 6 1.8530 -5.2948 -2.4945 15 1 2.9418 -5.3025 -2.5448 16 6 1.2934 -4.4979 -3.6746 17 7 1.3505 -6.6740 -2.5527 18 6 2.1888 -7.5032 -3.4289 19 6 1.6433 -8.9076 -3.4641 20 8 0.6538 -9.1900 -2.8220 21 7 2.2556 -9.8498 -4.2081 22 6 1.7596 -11.1276 -4.2397 23 1 0.8780 -11.3789 -3.6686 24 6 2.3905 -12.0990 -5.0072 25 7 3.4629 -11.7931 -5.7024 26 14 1.7143 -13.8398 -5.0508 27 1 0.5089 -13.9243 -4.1877 28 1 1.3506 -14.1948 -6.4460 29 1 2.7463 -14.7842 -4.5527 30 1 -0.3633 -0.0009 1.0277 31 1 -0.3634 0.8904 -0.5130 32 1 -0.3634 -0.8896 -0.5145 33 1 1.9895 2.1010 0.0007 34 1 5.2343 -1.6877 -1.0309 35 1 5.7167 -0.9415 0.5114 36 1 4.7527 -2.4378 0.5098 37 1 1.9358 -2.7641 -2.0150 38 1 -0.4098 -5.7948 -1.0586 39 1 -0.4309 -4.2826 -0.1202 40 1 -0.5839 -4.2318 -1.8929 41 1 0.2045 -4.4903 -3.6241 42 1 1.6662 -3.4745 -3.6314 43 1 1.6110 -4.9608 -4.6089 44 1 1.2861 -7.0747 -1.6289 45 1 2.1846 -7.0868 -4.4362 46 1 3.2095 -7.5189 -3.0466 47 1 3.0471 -9.6241 -4.7213 48 1 3.9031 -12.4711 -6.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755234770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:10 Heat of formation + Delta-G solvation = -64.866998 kcal Electronic energy + Delta-G solvation = -28854.329469 eV Core-core repulsion = 24717.751412 eV Total energy + Delta-G solvation = -4136.578057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.90684 -39.97748 -38.43848 -37.29043 -34.47104 -34.26433 -33.77001 -32.91374 -31.30483 -30.85250 -29.21393 -28.42398 -26.87111 -26.57738 -24.82545 -24.07742 -22.73584 -20.42903 -20.06382 -19.78282 -19.31710 -18.18261 -17.88128 -16.80327 -16.42705 -16.22996 -15.80765 -15.56526 -15.11338 -15.03997 -14.48991 -14.33953 -14.06195 -13.87610 -13.69663 -13.64123 -13.60029 -13.29763 -13.19446 -13.03466 -12.81848 -12.72619 -12.48974 -12.21930 -12.05205 -11.81527 -11.70821 -11.60415 -11.44414 -11.11709 -10.92951 -10.71740 -10.34538 -10.27917 -10.22513 -9.75844 -9.52472 -9.27762 -8.84544 -8.47455 -8.12696 -7.96763 -6.42408 -3.83090 1.25734 1.86226 2.31634 2.47230 3.00850 3.16183 3.26891 3.34347 3.90079 4.07617 4.10021 4.31488 4.42235 4.53325 4.62592 4.75116 4.84222 4.90510 5.01524 5.12840 5.13475 5.20366 5.24751 5.27811 5.29179 5.40884 5.48958 5.54610 5.55664 5.59280 5.74021 5.76680 5.78430 5.92339 5.93551 5.95764 6.03415 6.16053 6.26776 6.36394 6.42791 6.69597 7.14264 7.28885 7.55071 7.59026 7.99774 8.05981 8.60463 9.17512 9.53672 10.04933 10.75393 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026084 B = 0.001884 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.176861 B =14860.683084 C =15292.083956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.147 4.147 3 C -0.041 4.041 4 O -0.173 6.173 5 C 0.045 3.955 6 C -0.082 4.082 7 C -0.230 4.230 8 C 0.593 3.407 9 O -0.530 6.530 10 N -0.713 5.713 11 C 0.140 3.860 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.077 3.923 15 H 0.047 0.953 16 C -0.144 4.144 17 N -0.656 5.656 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.207 0.793 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.351 0.649 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 27.197 6.868 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C -0.107 4.107 4 O -0.069 6.069 5 C -0.007 4.007 6 C -0.138 4.138 7 C -0.235 4.235 8 C 0.378 3.622 9 O -0.406 6.406 10 N -0.366 5.366 11 C 0.036 3.964 12 H 0.106 0.894 13 C -0.216 4.216 14 C -0.034 4.034 15 H 0.065 0.935 16 C -0.202 4.202 17 N -0.290 5.290 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.224 0.776 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.237 0.763 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.172 0.828 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.858 26.743 7.451 27.775 hybrid contribution 0.942 -0.604 -0.348 1.172 sum 1.799 26.138 7.103 27.146 Atomic orbital electron populations 1.20204 0.88526 1.02915 1.02689 1.21357 0.96867 0.90501 1.06176 1.23630 0.79579 0.99556 1.07942 1.83724 1.29618 1.21869 1.71729 1.22552 0.96044 0.80822 1.01313 1.20471 0.91165 0.97982 1.04228 1.21037 0.93210 0.94011 1.15215 1.17283 0.76407 0.84633 0.83846 1.90827 1.50515 1.67606 1.31633 1.46183 1.69773 1.12278 1.08403 1.21127 0.96663 0.80654 0.97969 0.89439 1.22127 0.94038 1.03903 1.01487 1.21710 0.97210 0.90289 0.94154 0.93465 1.21884 1.02542 0.97754 0.98018 1.60191 1.51770 0.99927 1.17124 1.21736 0.94326 0.93559 0.98576 1.19781 0.86777 0.86057 0.84736 1.90531 1.27500 1.81552 1.47013 1.41865 1.27286 1.09097 1.41827 1.19757 1.11633 0.84698 1.26674 0.87842 1.25268 0.96033 1.00395 0.96331 1.69620 1.19454 1.35248 1.30026 0.85795 0.78902 0.81589 0.78043 1.19200 1.20755 1.20788 0.90940 0.91074 0.91296 0.77637 0.89225 0.89693 0.88972 0.76284 0.89888 0.92854 0.92110 0.91126 0.93292 0.92005 0.82799 0.89537 0.93812 0.77487 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.38 36.01 0.37 -0.25 16 2 C -0.15 -1.31 6.38 -102.49 -0.65 -1.97 16 3 C -0.04 -0.30 11.96 29.30 0.35 0.05 16 4 O -0.17 -1.53 10.52 7.66 0.08 -1.45 16 5 C 0.04 0.41 7.37 -34.96 -0.26 0.15 16 6 C -0.08 -0.54 10.24 36.01 0.37 -0.18 16 7 C -0.23 -2.43 6.07 -103.27 -0.63 -3.06 16 8 C 0.59 7.21 7.22 -12.54 -0.09 7.12 16 9 O -0.53 -8.52 16.77 5.26 0.09 -8.43 16 10 N -0.71 -7.14 4.99 -54.89 -0.27 -7.42 16 11 C 0.14 1.60 2.30 -67.93 -0.16 1.45 16 12 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 13 C -0.16 -1.88 9.02 37.16 0.34 -1.54 16 14 C 0.08 0.89 2.66 -67.71 -0.18 0.71 16 15 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 16 C -0.14 -1.46 8.93 37.15 0.33 -1.13 16 17 N -0.66 -10.00 5.14 -107.99 -0.55 -10.55 16 18 C 0.05 0.86 5.96 -4.97 -0.03 0.83 16 19 C 0.44 10.25 7.82 -10.99 -0.09 10.17 16 20 O -0.58 -15.62 15.78 5.54 0.09 -15.53 16 21 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 26 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.69 7.93 -51.93 -0.41 0.27 16 37 H 0.40 3.22 6.56 -40.82 -0.27 2.95 16 38 H 0.08 1.10 7.17 -51.93 -0.37 0.73 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 41 H 0.07 0.77 6.57 -51.93 -0.34 0.43 16 42 H 0.05 0.37 6.29 -51.93 -0.33 0.05 16 43 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 44 H 0.35 5.68 7.62 -39.29 -0.30 5.38 16 45 H 0.09 1.35 7.44 -51.93 -0.39 0.97 16 46 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -34.18 401.20 -6.59 -40.76 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.14 Total: 14.13 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -0.56 Total: 4.39 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.16 Total: -55.93 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.26 Total: -25.42 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.18 -6.59 -40.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755234770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.104 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds