Wall clock time and date at job start Tue Mar 31 2020 20:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34173 * 127.02705 * 2 1 4 4 O 1.34216 * 109.12708 * 180.02562 * 3 2 1 5 5 C 1.33646 * 110.90761 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.80214 * 179.97438 * 5 4 3 7 7 C 1.36415 * 108.39797 * 359.97438 * 5 4 3 8 8 C 1.47382 * 127.19393 * 179.73694 * 7 5 4 9 9 O 1.21619 * 120.00008 * 90.02284 * 8 7 5 10 10 N 1.34775 * 120.00094 * 270.02936 * 8 7 5 11 11 C 1.46497 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47471 * 324.99855 * 11 10 8 13 13 C 1.53005 * 109.47504 * 84.99912 * 11 10 8 14 14 C 1.53004 * 109.46936 * 204.99560 * 11 10 8 15 15 H 1.08996 * 109.46871 * 65.00731 * 14 11 10 16 16 C 1.52994 * 109.47351 * 304.99983 * 14 11 10 17 17 N 1.46901 * 109.46854 * 185.00167 * 14 11 10 18 18 C 1.46901 * 110.99853 * 205.00116 * 17 14 11 19 19 C 1.50703 * 109.47513 * 180.02562 * 18 17 14 20 20 O 1.21297 * 119.99450 * 359.97438 * 19 18 17 21 21 N 1.34766 * 120.00235 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00187 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99663 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00345 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99919 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00154 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47054 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47358 * 120.00147 * 26 24 22 29 29 H 1.48500 * 109.46890 * 240.00113 * 26 24 22 30 30 H 1.09005 * 109.46568 * 269.95144 * 1 2 3 31 31 H 1.08999 * 109.47358 * 29.94691 * 1 2 3 32 32 H 1.08997 * 109.47326 * 149.95663 * 1 2 3 33 33 H 1.08002 * 125.43114 * 0.04261 * 3 2 1 34 34 H 1.09002 * 109.46819 * 270.04067 * 6 5 4 35 35 H 1.08998 * 109.46761 * 30.04078 * 6 5 4 36 36 H 1.09000 * 109.47129 * 150.04080 * 6 5 4 37 37 H 0.96997 * 120.00100 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.47589 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.46831 * 300.00038 * 13 11 10 40 40 H 1.09003 * 109.46856 * 59.99086 * 13 11 10 41 41 H 1.09006 * 109.47219 * 300.00332 * 16 14 11 42 42 H 1.09004 * 109.47214 * 59.99817 * 16 14 11 43 43 H 1.09000 * 109.47516 * 179.97438 * 16 14 11 44 44 H 1.00900 * 111.00047 * 328.95162 * 17 14 11 45 45 H 1.09003 * 109.47351 * 300.00254 * 18 17 14 46 46 H 1.09001 * 109.47219 * 59.99753 * 18 17 14 47 47 H 0.97003 * 120.00370 * 359.97438 * 21 19 18 48 48 H 0.97005 * 120.00093 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6586 -0.0006 5 6 3.6623 -0.6760 -0.0015 6 6 4.9292 -1.4922 -0.0029 7 6 2.3923 -1.1738 -0.0010 8 6 1.9912 -2.5921 -0.0071 9 8 1.8279 -3.1823 1.0437 10 7 1.8057 -3.2349 -1.1770 11 6 1.4077 -4.6447 -1.1830 12 1 1.8779 -5.1587 -0.3447 13 6 -0.1136 -4.7458 -1.0546 14 6 1.8530 -5.2948 -2.4945 15 1 2.9418 -5.3025 -2.5448 16 6 1.2934 -4.4979 -3.6746 17 7 1.3505 -6.6740 -2.5527 18 6 2.1888 -7.5032 -3.4289 19 6 1.6433 -8.9076 -3.4641 20 8 0.6538 -9.1900 -2.8220 21 7 2.2556 -9.8498 -4.2081 22 6 1.7596 -11.1276 -4.2397 23 1 0.8780 -11.3789 -3.6686 24 6 2.3905 -12.0990 -5.0072 25 7 3.4629 -11.7931 -5.7024 26 14 1.7143 -13.8398 -5.0508 27 1 0.5089 -13.9243 -4.1877 28 1 1.3506 -14.1948 -6.4460 29 1 2.7463 -14.7842 -4.5527 30 1 -0.3633 -0.0009 1.0277 31 1 -0.3634 0.8904 -0.5130 32 1 -0.3634 -0.8896 -0.5145 33 1 1.9895 2.1010 0.0007 34 1 5.2343 -1.6877 -1.0309 35 1 5.7167 -0.9415 0.5114 36 1 4.7527 -2.4378 0.5098 37 1 1.9358 -2.7641 -2.0150 38 1 -0.4098 -5.7948 -1.0586 39 1 -0.4309 -4.2826 -0.1202 40 1 -0.5839 -4.2318 -1.8929 41 1 0.2045 -4.4903 -3.6241 42 1 1.6662 -3.4745 -3.6314 43 1 1.6110 -4.9608 -4.6089 44 1 1.2861 -7.0747 -1.6289 45 1 2.1846 -7.0868 -4.4362 46 1 3.2095 -7.5189 -3.0466 47 1 3.0471 -9.6241 -4.7213 48 1 3.9031 -12.4711 -6.2385 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755234770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:09 Heat of formation + Delta-G solvation = -90.248140 kcal Electronic energy + Delta-G solvation = -28855.430078 eV Core-core repulsion = 24717.751412 eV Total energy + Delta-G solvation = -4137.678666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.54799 -40.97295 -40.14347 -38.52416 -36.05758 -35.36112 -34.90608 -33.54867 -33.26268 -31.98768 -30.16113 -29.05287 -28.14089 -27.44021 -26.17758 -25.37023 -23.71012 -21.23509 -21.12076 -20.81914 -20.64766 -19.92604 -18.93927 -17.81285 -17.56724 -17.14755 -17.00858 -16.72835 -16.47188 -16.12218 -15.98643 -15.64156 -15.33358 -15.13479 -14.72188 -14.41858 -14.29912 -14.25796 -14.16366 -13.79687 -13.66248 -13.57056 -13.54208 -13.42776 -13.29395 -13.11066 -13.08631 -12.85064 -12.55347 -12.39812 -12.30788 -12.11753 -11.96219 -11.70742 -11.50945 -11.27511 -10.46755 -10.35901 -10.22420 -10.00888 -9.45092 -9.37796 -8.46702 -5.95021 0.60795 1.22402 1.36584 1.38588 1.42049 1.56073 1.84117 2.05873 2.14892 2.30594 2.96196 3.20774 3.47392 3.52251 3.59943 3.73870 3.91775 3.96922 4.17097 4.19850 4.30923 4.35559 4.44660 4.46600 4.56691 4.58165 4.61422 4.64554 4.73984 4.74651 4.77781 4.82036 4.94083 4.97964 5.02043 5.02342 5.18853 5.25199 5.39740 5.41707 5.45995 5.49096 5.88091 6.06699 6.09055 6.32729 6.41901 6.60525 7.09969 7.13296 7.56974 8.12424 8.70871 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026084 B = 0.001884 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.176861 B =14860.683084 C =15292.083956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 C -0.028 4.028 4 O -0.177 6.177 5 C 0.044 3.956 6 C -0.083 4.083 7 C -0.260 4.260 8 C 0.598 3.402 9 O -0.577 6.577 10 N -0.696 5.696 11 C 0.148 3.852 12 H 0.069 0.931 13 C -0.150 4.150 14 C 0.084 3.916 15 H 0.061 0.939 16 C -0.142 4.142 17 N -0.668 5.668 18 C 0.066 3.934 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.246 0.754 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.414 0.586 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.343 0.657 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 29.185 5.730 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.171 4.171 3 C -0.094 4.094 4 O -0.074 6.074 5 C -0.008 4.008 6 C -0.139 4.139 7 C -0.264 4.264 8 C 0.384 3.616 9 O -0.457 6.457 10 N -0.349 5.349 11 C 0.043 3.957 12 H 0.087 0.913 13 C -0.208 4.208 14 C -0.026 4.026 15 H 0.079 0.921 16 C -0.200 4.200 17 N -0.301 5.301 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.262 0.738 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.252 0.748 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.163 0.837 45 H 0.126 0.874 46 H 0.084 0.916 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.842 28.771 6.263 29.503 hybrid contribution 0.635 -1.137 0.034 1.303 sum 2.477 27.634 6.298 28.451 Atomic orbital electron populations 1.20220 0.87730 1.03601 1.02552 1.21626 0.97679 0.90386 1.07457 1.24362 0.78597 1.00786 1.05633 1.83751 1.30477 1.21541 1.71582 1.22916 0.96356 0.81172 1.00381 1.20571 0.90636 0.97223 1.05468 1.21070 0.94552 0.93389 1.17386 1.17542 0.75383 0.85246 0.83404 1.90800 1.52786 1.68804 1.33309 1.45996 1.68770 1.11549 1.08607 1.20920 0.96053 0.81293 0.97442 0.91295 1.22034 0.94579 1.02826 1.01387 1.21737 0.97986 0.88265 0.94628 0.92063 1.21891 1.02075 0.99089 0.96943 1.60217 1.52143 1.01298 1.16480 1.21591 0.95040 0.89649 1.00339 1.20880 0.85766 0.88020 0.82784 1.90503 1.29321 1.82820 1.48248 1.41926 1.27692 1.08855 1.42610 1.19690 1.11894 0.86610 1.27969 0.90399 1.26026 0.96124 1.03723 0.95468 1.69673 1.19854 1.36553 1.30005 0.84879 0.78141 0.77086 0.78288 1.19890 1.19580 1.19653 0.91494 0.88430 0.92560 0.73814 0.87353 0.88136 0.90226 0.74756 0.91487 0.93955 0.90921 0.91920 0.90378 0.92140 0.83716 0.87415 0.91551 0.76937 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.38 71.24 0.74 -0.38 16 2 C -0.17 -2.78 6.38 -18.49 -0.12 -2.90 16 3 C -0.03 -0.34 11.96 66.89 0.80 0.46 16 4 O -0.18 -2.75 10.52 4.51 0.05 -2.70 16 5 C 0.04 0.75 7.37 25.26 0.19 0.93 16 6 C -0.08 -0.98 10.24 71.24 0.73 -0.25 16 7 C -0.26 -5.29 6.07 -18.99 -0.12 -5.41 16 8 C 0.60 14.56 7.22 86.65 0.63 15.19 16 9 O -0.58 -19.28 16.77 -4.09 -0.07 -19.35 16 10 N -0.70 -13.35 4.99 -445.83 -2.22 -15.58 16 11 C 0.15 3.34 2.30 45.00 0.10 3.44 16 12 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 13 C -0.15 -3.64 9.02 71.98 0.65 -2.99 16 14 C 0.08 1.80 2.66 44.91 0.12 1.92 16 15 H 0.06 1.20 7.80 -2.39 -0.02 1.18 16 16 C -0.14 -2.53 8.93 71.98 0.64 -1.89 16 17 N -0.67 -19.96 5.14 -495.57 -2.55 -22.50 16 18 C 0.07 2.16 5.96 85.56 0.51 2.68 16 19 C 0.44 20.57 7.82 87.66 0.69 21.25 16 20 O -0.62 -34.37 15.78 -3.08 -0.05 -34.41 16 21 N -0.57 -29.19 5.29 -306.99 -1.62 -30.81 16 22 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 23 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 25 N -0.92 -49.40 13.05 21.66 0.28 -49.11 16 26 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.25 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.15 7.93 -2.39 -0.02 1.14 16 37 H 0.41 5.79 6.56 -92.71 -0.61 5.19 16 38 H 0.07 1.85 7.17 -2.39 -0.02 1.83 16 39 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.07 1.56 6.57 -2.39 -0.02 1.55 16 41 H 0.06 1.24 6.57 -2.38 -0.02 1.23 16 42 H 0.08 0.93 6.29 -2.38 -0.02 0.91 16 43 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 44 H 0.34 11.27 7.62 -89.69 -0.68 10.58 16 45 H 0.11 3.12 7.44 -2.39 -0.02 3.10 16 46 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 47 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 48 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -76.15 401.20 1.68 -74.47 By element: Atomic # 1 Polarization: 42.19 SS G_CDS: -1.01 Total: 41.18 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.84 Total: 13.74 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -6.11 Total: -118.00 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -0.07 Total: -56.47 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -76.15 1.68 -74.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755234770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.778 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds