Wall clock time and date at job start Tue Mar 31 2020 20:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34218 * 109.12177 * 179.97438 * 3 2 1 5 5 C 1.33649 * 110.90797 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.79904 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.39826 * 359.75015 * 5 4 3 8 8 C 1.47381 * 127.19104 * 180.26443 * 7 5 4 9 9 O 1.21616 * 120.00100 * 270.12959 * 8 7 5 10 10 N 1.34779 * 120.00123 * 90.13250 * 8 7 5 11 11 C 1.46500 * 120.00175 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46811 * 34.99643 * 11 10 8 13 13 C 1.52998 * 109.46961 * 275.00260 * 11 10 8 14 14 C 1.52998 * 109.46975 * 154.99850 * 11 10 8 15 15 H 1.08998 * 109.46782 * 60.00287 * 14 11 10 16 16 C 1.52998 * 109.47014 * 300.00282 * 14 11 10 17 17 N 1.46898 * 109.46826 * 179.97438 * 14 11 10 18 18 C 1.46903 * 110.99978 * 204.99961 * 17 14 11 19 19 C 1.50702 * 109.47061 * 180.02562 * 18 17 14 20 20 O 1.21293 * 119.99783 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99494 * 180.02562 * 19 18 17 22 22 C 1.37109 * 119.99383 * 180.02562 * 21 19 18 23 23 H 1.07992 * 120.00007 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99448 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00376 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99496 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47256 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46933 * 120.00449 * 26 24 22 29 29 H 1.48497 * 109.47280 * 239.99826 * 26 24 22 30 30 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 33 33 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47293 * 0.02562 * 6 5 4 35 35 H 1.09002 * 109.47034 * 120.02249 * 6 5 4 36 36 H 1.09007 * 109.47153 * 240.01956 * 6 5 4 37 37 H 0.97000 * 119.99607 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.46939 * 299.99728 * 13 11 10 39 39 H 1.08998 * 109.47692 * 60.00122 * 13 11 10 40 40 H 1.08998 * 109.47043 * 180.02562 * 13 11 10 41 41 H 1.08992 * 109.47436 * 60.00423 * 16 14 11 42 42 H 1.09004 * 109.46745 * 180.02562 * 16 14 11 43 43 H 1.08994 * 109.46952 * 299.99347 * 16 14 11 44 44 H 1.00901 * 111.00670 * 328.95657 * 17 14 11 45 45 H 1.08995 * 109.47137 * 300.00339 * 18 17 14 46 46 H 1.08999 * 109.46954 * 60.00442 * 18 17 14 47 47 H 0.96999 * 120.00543 * 0.02562 * 21 19 18 48 48 H 0.96998 * 120.00119 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5922 0.6588 0.0006 5 6 3.6623 -0.6758 0.0015 6 6 4.9292 -1.4920 0.0029 7 6 2.3923 -1.1737 0.0072 8 6 1.9914 -2.5920 0.0156 9 8 1.8257 -3.1833 -1.0341 10 7 1.8084 -3.2336 1.1866 11 6 1.4094 -4.6432 1.1950 12 1 1.8772 -5.1582 0.3559 13 6 -0.1122 -4.7432 1.0704 14 6 1.8577 -5.2924 2.5059 15 1 1.3898 -4.7773 3.3449 16 6 3.3793 -5.1922 2.6303 17 7 1.4570 -6.7056 2.5145 18 6 1.3143 -7.2040 3.8890 19 6 0.9040 -8.6538 3.8576 20 8 0.7465 -9.2166 2.7948 21 7 0.7122 -9.3248 5.0106 22 6 0.3394 -10.6440 4.9820 23 1 0.1991 -11.1451 4.0357 24 6 0.1422 -11.3360 6.1707 25 7 0.3124 -10.7261 7.3222 26 14 -0.3664 -13.1330 6.1317 27 1 -0.4911 -13.5817 4.7217 28 1 0.6607 -13.9532 6.8228 29 1 -1.6725 -13.2929 6.8199 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8903 0.5134 32 1 -0.3633 -0.8898 0.5143 33 1 1.9895 2.1011 -0.0004 34 1 5.7912 -0.8249 0.0035 35 1 4.9556 -2.1204 0.8931 36 1 4.9571 -2.1211 -0.8869 37 1 1.9409 -2.7621 2.0239 38 1 -0.5801 -4.2282 1.9095 39 1 -0.4316 -4.2808 0.1365 40 1 -0.4092 -5.7920 1.0771 41 1 3.6761 -4.1435 2.6242 42 1 3.6987 -5.6551 3.5641 43 1 3.8471 -5.7073 1.7914 44 1 0.6063 -6.8436 1.9897 45 1 2.2662 -7.1074 4.4112 46 1 0.5537 -6.6220 4.4094 47 1 0.8378 -8.8747 5.8605 48 1 0.1743 -11.2091 8.1519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755234771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:12 Heat of formation + Delta-G solvation = -92.178065 kcal Electronic energy + Delta-G solvation = -28862.885049 eV Core-core repulsion = 24725.122695 eV Total energy + Delta-G solvation = -4137.762353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.53829 -40.94196 -40.14886 -38.47162 -36.04782 -35.35888 -34.89925 -33.52712 -33.26580 -31.82839 -30.83202 -29.07627 -28.04269 -27.40412 -25.92369 -25.18855 -23.44935 -21.57465 -21.10686 -21.08421 -20.63505 -19.92718 -18.88348 -17.83146 -17.69380 -17.17904 -17.06506 -16.62766 -16.41776 -16.07717 -15.89853 -15.44103 -15.33984 -15.03230 -14.72208 -14.54085 -14.26553 -14.18061 -14.16568 -14.05984 -13.81960 -13.59198 -13.53031 -13.48103 -13.27120 -13.14857 -12.90774 -12.69750 -12.62936 -12.40502 -12.35321 -12.27902 -12.11739 -11.64995 -11.51180 -11.27218 -10.45653 -10.34084 -10.24572 -10.01096 -9.44264 -9.36169 -8.46804 -5.95133 0.61651 1.22797 1.36488 1.40801 1.42097 1.56064 1.85065 2.05430 2.14683 2.30661 2.97447 3.20635 3.49749 3.52095 3.55204 3.75414 3.91455 3.99437 4.14882 4.20913 4.30874 4.37707 4.40938 4.46246 4.54707 4.55855 4.59881 4.62891 4.69626 4.73645 4.76071 4.84939 4.93277 4.97317 4.99748 5.02296 5.16435 5.20719 5.34366 5.39395 5.42001 5.46391 5.89511 6.07826 6.10236 6.36370 6.43560 6.60498 7.12127 7.13178 7.56694 8.12289 8.70724 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.001861 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.296639 B =15040.924058 C =15284.917015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 C -0.029 4.029 4 O -0.178 6.178 5 C 0.045 3.955 6 C -0.084 4.084 7 C -0.259 4.259 8 C 0.600 3.400 9 O -0.577 6.577 10 N -0.694 5.694 11 C 0.149 3.851 12 H 0.073 0.927 13 C -0.166 4.166 14 C 0.084 3.916 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.678 5.678 18 C 0.067 3.933 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.245 0.755 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.346 0.654 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.530 28.308 -7.266 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.171 4.171 3 C -0.095 4.095 4 O -0.074 6.074 5 C -0.007 4.007 6 C -0.140 4.140 7 C -0.263 4.263 8 C 0.387 3.613 9 O -0.456 6.456 10 N -0.346 5.346 11 C 0.043 3.957 12 H 0.091 0.909 13 C -0.224 4.224 14 C -0.026 4.026 15 H 0.088 0.912 16 C -0.196 4.196 17 N -0.314 5.314 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.261 0.739 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.252 0.748 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.168 0.832 45 H 0.124 0.876 46 H 0.089 0.911 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.160 27.381 -8.570 29.345 hybrid contribution -1.286 -0.503 0.916 1.657 sum 4.874 26.878 -7.654 28.368 Atomic orbital electron populations 1.20216 0.87768 1.03558 1.02534 1.21621 0.97649 0.90415 1.07457 1.24350 0.78642 1.00777 1.05710 1.83761 1.30462 1.21624 1.71537 1.22920 0.96382 0.81116 1.00300 1.20591 0.90777 0.98011 1.04656 1.21040 0.94519 0.93359 1.17410 1.17490 0.75369 0.85145 0.83339 1.90805 1.52680 1.68696 1.33417 1.45805 1.68838 1.11350 1.08574 1.20881 0.95068 0.81240 0.98476 0.90896 1.22200 0.95151 1.02436 1.02616 1.21755 0.97676 0.87278 0.95851 0.91151 1.21812 0.93486 1.02096 1.02163 1.60170 1.41276 1.17299 1.12671 1.21582 1.02604 0.90955 0.91382 1.20904 0.82671 0.90229 0.83746 1.90504 1.57787 1.71368 1.31411 1.41925 1.60713 1.10822 1.07534 1.19687 1.44800 0.87648 0.94071 0.90448 1.26019 0.96989 1.04240 0.94030 1.69668 1.49487 1.38974 0.97881 0.84886 0.78233 0.77113 0.78201 1.19941 1.19627 1.19551 0.91499 0.88518 0.92547 0.73899 0.87922 0.87914 0.89715 0.74836 0.90699 0.92832 0.91669 0.90261 0.92247 0.93417 0.83236 0.87565 0.91092 0.76885 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.38 71.24 0.74 -0.35 16 2 C -0.17 -2.74 6.38 -18.49 -0.12 -2.86 16 3 C -0.03 -0.35 11.96 66.89 0.80 0.45 16 4 O -0.18 -2.73 10.52 4.46 0.05 -2.69 16 5 C 0.04 0.75 7.37 25.26 0.19 0.94 16 6 C -0.08 -0.98 10.17 71.24 0.72 -0.25 16 7 C -0.26 -5.17 6.07 -18.99 -0.12 -5.29 16 8 C 0.60 14.32 7.38 86.65 0.64 14.96 16 9 O -0.58 -19.15 16.77 -4.08 -0.07 -19.22 16 10 N -0.69 -12.84 4.38 -445.84 -1.95 -14.80 16 11 C 0.15 3.33 2.29 44.99 0.10 3.43 16 12 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 13 C -0.17 -3.72 9.25 71.98 0.67 -3.05 16 14 C 0.08 1.82 2.28 44.91 0.10 1.92 16 15 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 16 C -0.14 -2.71 9.26 71.98 0.67 -2.04 16 17 N -0.68 -20.77 5.93 -495.58 -2.94 -23.71 16 18 C 0.07 2.20 5.97 85.56 0.51 2.71 16 19 C 0.44 20.59 7.82 87.66 0.69 21.27 16 20 O -0.62 -34.77 15.78 -3.07 -0.05 -34.81 16 21 N -0.57 -29.10 5.29 -306.98 -1.62 -30.72 16 22 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 25 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 26 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.25 0.70 8.06 -2.91 -0.02 0.67 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.41 5.38 8.37 -92.71 -0.78 4.60 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.60 6.21 -2.39 -0.01 1.59 16 41 H 0.08 1.11 7.44 -2.39 -0.02 1.09 16 42 H 0.06 1.19 7.45 -2.38 -0.02 1.17 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.35 11.34 5.86 -89.69 -0.53 10.82 16 45 H 0.11 3.11 7.44 -2.39 -0.02 3.09 16 46 H 0.07 1.98 8.05 -2.39 -0.02 1.96 16 47 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -76.94 405.27 1.57 -75.38 By element: Atomic # 1 Polarization: 41.93 SS G_CDS: -1.03 Total: 40.90 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.87 Total: 13.55 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -6.23 Total: -118.12 kcal Atomic # 8 Polarization: -56.65 SS G_CDS: -0.07 Total: -56.72 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -76.94 1.57 -75.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755234771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.800 kcal (2) G-P(sol) polarization free energy of solvation -76.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds