Wall clock time and date at job start Tue Mar 31 2020 21:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47464 * 2 1 4 4 O 1.33661 * 125.79918 * 270.19132 * 3 2 1 5 5 C 1.34209 * 110.90538 * 180.28423 * 4 3 2 6 6 C 1.34178 * 109.12644 * 359.72238 * 5 4 3 7 7 C 1.36412 * 125.80698 * 89.99208 * 3 2 1 8 8 C 1.47385 * 127.18786 * 0.02562 * 7 3 2 9 9 O 1.21614 * 119.99961 * 7.09640 * 8 7 3 10 10 N 1.34776 * 119.99858 * 187.10254 * 8 7 3 11 11 C 1.46505 * 120.00028 * 5.99681 * 10 8 7 12 12 C 1.46493 * 120.00089 * 186.26745 * 10 8 7 13 13 C 1.52997 * 109.47460 * 269.72668 * 12 10 8 14 14 H 1.09003 * 109.47493 * 64.99624 * 13 12 10 15 15 C 1.53000 * 109.47385 * 184.99903 * 13 12 10 16 16 N 1.46903 * 109.47109 * 304.99835 * 13 12 10 17 17 C 1.46895 * 110.99912 * 154.99828 * 16 13 12 18 18 C 1.50711 * 109.46970 * 180.02562 * 17 16 13 19 19 O 1.21289 * 119.99699 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99947 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99763 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00241 * 0.02562 * 21 20 18 23 23 C 1.38957 * 119.99901 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99938 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47515 * 89.99280 * 25 23 21 27 27 H 1.48501 * 109.46806 * 209.99734 * 25 23 21 28 28 H 1.48501 * 109.46876 * 329.99442 * 25 23 21 29 29 H 1.09001 * 109.47675 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47349 * 300.00989 * 1 2 3 31 31 H 1.09007 * 109.47264 * 60.00151 * 1 2 3 32 32 H 1.08995 * 109.47196 * 239.99400 * 2 1 3 33 33 H 1.09004 * 109.46781 * 119.99685 * 2 1 3 34 34 H 1.08002 * 125.43873 * 179.71962 * 5 4 3 35 35 H 1.07999 * 127.01941 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46661 * 276.14773 * 11 10 8 37 37 H 1.08998 * 109.47071 * 36.14370 * 11 10 8 38 38 H 1.08993 * 109.47050 * 156.14822 * 11 10 8 39 39 H 1.08998 * 109.46962 * 29.72377 * 12 10 8 40 40 H 1.09001 * 109.47590 * 149.72262 * 12 10 8 41 41 H 1.09003 * 109.47072 * 179.97438 * 15 13 12 42 42 H 1.08994 * 109.46998 * 299.99937 * 15 13 12 43 43 H 1.09000 * 109.47165 * 59.99952 * 15 13 12 44 44 H 1.00898 * 110.99879 * 278.95677 * 16 13 12 45 45 H 1.08998 * 109.47371 * 299.99545 * 17 16 13 46 46 H 1.08997 * 109.47576 * 60.00585 * 17 16 13 47 47 H 0.97005 * 120.00062 * 359.97438 * 20 18 17 48 48 H 0.96991 * 120.00062 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2896 2.1591 -1.0841 5 6 2.7290 3.3794 -0.7392 6 6 2.7645 3.4720 0.5990 7 6 2.2983 2.1733 1.1063 8 6 2.1549 1.7668 2.5157 9 8 1.8856 0.6134 2.7915 10 7 2.3222 2.6734 3.4989 11 6 2.5161 4.0870 3.1665 12 6 2.3161 2.2444 4.8996 13 6 0.8880 2.3043 5.4452 14 1 0.2672 1.5792 4.9188 15 6 0.8988 1.9768 6.9397 16 7 0.3429 3.6534 5.2434 17 6 -1.1246 3.6247 5.1835 18 6 -1.6463 5.0233 4.9756 19 8 -0.8717 5.9524 4.8867 20 7 -2.9734 5.2415 4.8886 21 6 -3.4479 6.5136 4.6989 22 1 -2.7582 7.3409 4.6189 23 6 -4.8162 6.7386 4.6097 24 7 -5.6553 5.7320 4.7066 25 14 -5.4627 8.4719 4.3506 26 1 -5.5739 8.7465 2.8954 27 1 -6.8005 8.6007 4.9824 28 1 -4.5277 9.4464 4.9681 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0093 4.1621 -1.4286 35 1 3.0729 4.3259 1.1838 36 1 3.5672 4.2662 2.9407 37 1 1.9092 4.3426 2.2979 38 1 2.2161 4.7038 4.0136 39 1 2.6887 1.2224 4.9682 40 1 2.9565 2.9045 5.4846 41 1 -0.1186 2.0200 7.3284 42 1 1.3032 0.9758 7.0894 43 1 1.5195 2.7020 7.4660 44 1 0.6632 4.2841 5.9629 45 1 -1.4421 2.9920 4.3547 46 1 -1.5187 3.2248 6.1177 47 1 -3.5928 4.4983 4.9593 48 1 -6.6104 5.8890 4.6439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755585701.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:48 Heat of formation + Delta-G solvation = -46.666162 kcal Electronic energy + Delta-G solvation = -29959.076151 eV Core-core repulsion = 25823.287342 eV Total energy + Delta-G solvation = -4135.788809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.65792 -39.64213 -38.32075 -36.78649 -35.01151 -34.07277 -33.89040 -32.76750 -31.28594 -30.71899 -28.92785 -27.42626 -26.46684 -26.03766 -24.05860 -23.64797 -22.50952 -21.52887 -20.51406 -19.25834 -18.84930 -17.88805 -17.34507 -16.46638 -16.28379 -16.12169 -15.80370 -15.31650 -15.06126 -14.66464 -14.54640 -14.45388 -14.32524 -13.86237 -13.55944 -13.49059 -13.28594 -13.09559 -12.80926 -12.71921 -12.40456 -12.34529 -12.13990 -12.06658 -11.70222 -11.61529 -11.55653 -11.39471 -11.23469 -11.08103 -11.03132 -10.88324 -10.40055 -10.21825 -9.82534 -9.74281 -9.50528 -8.79137 -8.56711 -8.31753 -7.97676 -7.90305 -6.41318 -3.82183 1.34882 2.01920 2.73125 3.14951 3.17479 3.25997 3.31482 3.44132 3.92208 4.11211 4.36862 4.40150 4.64872 4.79698 4.95697 4.99702 5.10159 5.15617 5.16895 5.24842 5.29462 5.36113 5.38908 5.46504 5.48232 5.56356 5.56779 5.75397 5.76460 5.77483 5.81300 5.90619 5.97110 6.00409 6.08832 6.11449 6.15771 6.20179 6.24537 6.29702 6.65781 6.97616 7.24450 7.54556 7.55115 7.71529 8.06635 8.30957 8.61668 9.18057 9.55219 10.06369 10.76496 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.003072 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.482936 B = 9110.978561 C =10245.087228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C 0.075 3.925 4 O -0.178 6.178 5 C -0.046 4.046 6 C -0.196 4.196 7 C -0.236 4.236 8 C 0.589 3.411 9 O -0.552 6.552 10 N -0.585 5.585 11 C 0.079 3.921 12 C 0.133 3.867 13 C 0.064 3.936 14 H 0.082 0.918 15 C -0.181 4.181 16 N -0.658 5.658 17 C 0.053 3.947 18 C 0.443 3.557 19 O -0.585 6.585 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.206 0.794 35 H 0.171 0.829 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.346 0.654 45 H 0.082 0.918 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.575 -10.195 -5.631 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C 0.022 3.978 4 O -0.074 6.074 5 C -0.112 4.112 6 C -0.215 4.215 7 C -0.240 4.240 8 C 0.379 3.621 9 O -0.432 6.432 10 N -0.315 5.315 11 C -0.063 4.063 12 C 0.010 3.990 13 C -0.047 4.047 14 H 0.100 0.900 15 C -0.240 4.240 16 N -0.289 5.289 17 C -0.080 4.080 18 C 0.228 3.772 19 O -0.469 6.469 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.223 0.777 35 H 0.189 0.811 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.166 0.834 45 H 0.100 0.900 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.783 -10.234 -6.512 20.708 hybrid contribution -1.098 0.676 0.984 1.621 sum 15.685 -9.558 -5.529 19.182 Atomic orbital electron populations 1.21702 0.93308 1.02548 1.02642 1.20393 0.96992 0.86513 1.04930 1.22827 0.97408 0.94395 0.83171 1.83743 1.65210 1.23331 1.35087 1.23924 1.04406 0.86235 0.96615 1.23594 1.05129 0.98293 0.94439 1.21119 1.13271 0.95736 0.93909 1.17214 0.76347 0.84688 0.83802 1.90706 1.49696 1.18976 1.83840 1.47251 1.70734 1.08078 1.05475 1.22274 0.99111 0.81006 1.03943 1.21476 0.96016 1.00743 0.80809 1.22035 0.96723 0.91734 0.94254 0.89969 1.22453 1.02352 1.02087 0.97122 1.60178 1.07498 1.07440 1.53820 1.21662 0.88573 0.97102 1.00629 1.19816 0.83192 0.89727 0.84442 1.90497 1.56195 1.44407 1.55798 1.41871 1.05044 1.09884 1.63270 1.19687 0.91186 0.85642 1.46347 0.87961 1.25260 0.95824 0.99440 0.97416 1.69611 1.03333 1.31040 1.50318 0.85869 0.78034 0.81953 0.78493 1.20405 1.20946 1.19435 0.91416 0.91795 0.92593 0.90278 0.86738 0.77741 0.81138 0.93753 0.90338 0.89146 0.89905 0.90656 0.92284 0.92040 0.92315 0.83430 0.90003 0.94013 0.77508 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 37.16 0.37 -1.21 16 2 C -0.05 -0.56 6.02 -27.88 -0.17 -0.73 16 3 C 0.08 0.96 6.63 -34.97 -0.23 0.73 16 4 O -0.18 -2.13 10.52 7.65 0.08 -2.05 16 5 C -0.05 -0.46 12.03 29.30 0.35 -0.11 16 6 C -0.20 -2.22 8.87 -37.46 -0.33 -2.55 16 7 C -0.24 -3.23 6.06 -103.28 -0.63 -3.86 16 8 C 0.59 8.78 7.64 -12.54 -0.10 8.68 16 9 O -0.55 -9.10 14.47 5.27 0.08 -9.03 16 10 N -0.59 -7.76 2.73 -182.87 -0.50 -8.25 16 11 C 0.08 0.96 8.19 59.85 0.49 1.45 16 12 C 0.13 1.57 5.08 -4.05 -0.02 1.55 16 13 C 0.06 0.82 2.89 -67.71 -0.20 0.63 16 14 H 0.08 1.21 7.80 -51.93 -0.40 0.81 16 15 C -0.18 -1.92 9.16 37.16 0.34 -1.58 16 16 N -0.66 -10.15 4.25 -107.99 -0.46 -10.61 16 17 C 0.05 0.95 5.97 -4.97 -0.03 0.92 16 18 C 0.44 10.35 7.82 -10.98 -0.09 10.26 16 19 O -0.58 -15.35 15.78 5.55 0.09 -15.26 16 20 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.11 1.37 6.37 -51.93 -0.33 1.04 16 34 H 0.21 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.17 1.63 4.87 -52.49 -0.26 1.38 16 36 H 0.04 0.43 7.34 -51.93 -0.38 0.05 16 37 H 0.08 1.03 5.37 -51.93 -0.28 0.75 16 38 H 0.09 1.19 7.08 -51.93 -0.37 0.83 16 39 H 0.08 0.98 7.51 -51.93 -0.39 0.59 16 40 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 44 H 0.35 5.41 8.17 -39.29 -0.32 5.09 16 45 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 46 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 47 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -32.82 394.18 -6.74 -39.56 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -7.13 Total: 15.87 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.48 Total: 6.19 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.29 Total: -57.25 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: 0.24 Total: -26.34 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.82 -6.74 -39.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755585701.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.108 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds