Wall clock time and date at job start Tue Mar 31 2020 21:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47464 * 2 1 4 4 O 1.33661 * 125.79918 * 270.19132 * 3 2 1 5 5 C 1.34209 * 110.90538 * 180.28423 * 4 3 2 6 6 C 1.34178 * 109.12644 * 359.72238 * 5 4 3 7 7 C 1.36412 * 125.80698 * 89.99208 * 3 2 1 8 8 C 1.47385 * 127.18786 * 0.02562 * 7 3 2 9 9 O 1.21614 * 119.99961 * 7.09640 * 8 7 3 10 10 N 1.34776 * 119.99858 * 187.10254 * 8 7 3 11 11 C 1.46505 * 120.00028 * 5.99681 * 10 8 7 12 12 C 1.46493 * 120.00089 * 186.26745 * 10 8 7 13 13 C 1.52997 * 109.47460 * 269.72668 * 12 10 8 14 14 H 1.09003 * 109.47493 * 64.99624 * 13 12 10 15 15 C 1.53000 * 109.47385 * 184.99903 * 13 12 10 16 16 N 1.46903 * 109.47109 * 304.99835 * 13 12 10 17 17 C 1.46895 * 110.99912 * 154.99828 * 16 13 12 18 18 C 1.50711 * 109.46970 * 180.02562 * 17 16 13 19 19 O 1.21289 * 119.99699 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99947 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99763 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00241 * 0.02562 * 21 20 18 23 23 C 1.38957 * 119.99901 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99938 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47515 * 89.99280 * 25 23 21 27 27 H 1.48501 * 109.46806 * 209.99734 * 25 23 21 28 28 H 1.48501 * 109.46876 * 329.99442 * 25 23 21 29 29 H 1.09001 * 109.47675 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47349 * 300.00989 * 1 2 3 31 31 H 1.09007 * 109.47264 * 60.00151 * 1 2 3 32 32 H 1.08995 * 109.47196 * 239.99400 * 2 1 3 33 33 H 1.09004 * 109.46781 * 119.99685 * 2 1 3 34 34 H 1.08002 * 125.43873 * 179.71962 * 5 4 3 35 35 H 1.07999 * 127.01941 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46661 * 276.14773 * 11 10 8 37 37 H 1.08998 * 109.47071 * 36.14370 * 11 10 8 38 38 H 1.08993 * 109.47050 * 156.14822 * 11 10 8 39 39 H 1.08998 * 109.46962 * 29.72377 * 12 10 8 40 40 H 1.09001 * 109.47590 * 149.72262 * 12 10 8 41 41 H 1.09003 * 109.47072 * 179.97438 * 15 13 12 42 42 H 1.08994 * 109.46998 * 299.99937 * 15 13 12 43 43 H 1.09000 * 109.47165 * 59.99952 * 15 13 12 44 44 H 1.00898 * 110.99879 * 278.95677 * 16 13 12 45 45 H 1.08998 * 109.47371 * 299.99545 * 17 16 13 46 46 H 1.08997 * 109.47576 * 60.00585 * 17 16 13 47 47 H 0.97005 * 120.00062 * 359.97438 * 20 18 17 48 48 H 0.96991 * 120.00062 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2896 2.1591 -1.0841 5 6 2.7290 3.3794 -0.7392 6 6 2.7645 3.4720 0.5990 7 6 2.2983 2.1733 1.1063 8 6 2.1549 1.7668 2.5157 9 8 1.8856 0.6134 2.7915 10 7 2.3222 2.6734 3.4989 11 6 2.5161 4.0870 3.1665 12 6 2.3161 2.2444 4.8996 13 6 0.8880 2.3043 5.4452 14 1 0.2672 1.5792 4.9188 15 6 0.8988 1.9768 6.9397 16 7 0.3429 3.6534 5.2434 17 6 -1.1246 3.6247 5.1835 18 6 -1.6463 5.0233 4.9756 19 8 -0.8717 5.9524 4.8867 20 7 -2.9734 5.2415 4.8886 21 6 -3.4479 6.5136 4.6989 22 1 -2.7582 7.3409 4.6189 23 6 -4.8162 6.7386 4.6097 24 7 -5.6553 5.7320 4.7066 25 14 -5.4627 8.4719 4.3506 26 1 -5.5739 8.7465 2.8954 27 1 -6.8005 8.6007 4.9824 28 1 -4.5277 9.4464 4.9681 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0093 4.1621 -1.4286 35 1 3.0729 4.3259 1.1838 36 1 3.5672 4.2662 2.9407 37 1 1.9092 4.3426 2.2979 38 1 2.2161 4.7038 4.0136 39 1 2.6887 1.2224 4.9682 40 1 2.9565 2.9045 5.4846 41 1 -0.1186 2.0200 7.3284 42 1 1.3032 0.9758 7.0894 43 1 1.5195 2.7020 7.4660 44 1 0.6632 4.2841 5.9629 45 1 -1.4421 2.9920 4.3547 46 1 -1.5187 3.2248 6.1177 47 1 -3.5928 4.4983 4.9593 48 1 -6.6104 5.8890 4.6439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755585701.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:47 Heat of formation + Delta-G solvation = -68.914355 kcal Electronic energy + Delta-G solvation = -29960.040906 eV Core-core repulsion = 25823.287342 eV Total energy + Delta-G solvation = -4136.753563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.55062 -40.75003 -40.10687 -38.05050 -36.21209 -35.81942 -34.98100 -33.74033 -33.26630 -31.98585 -29.81930 -28.41987 -27.96172 -27.21561 -25.74187 -24.63110 -23.46488 -22.50339 -21.55871 -21.08402 -19.92814 -19.79802 -18.32668 -17.82077 -17.34700 -17.17576 -17.11335 -16.66944 -16.41049 -16.18705 -15.95695 -15.60798 -15.41650 -15.21697 -15.04571 -14.49666 -14.41345 -14.33430 -13.91690 -13.70271 -13.61128 -13.55949 -13.38640 -13.25999 -13.10425 -12.96809 -12.81180 -12.58428 -12.47281 -12.40532 -12.23781 -12.11661 -11.97022 -11.90191 -11.49983 -10.89696 -10.71090 -10.36304 -10.01728 -9.77721 -9.47106 -9.11372 -8.46611 -5.95521 0.36529 1.16869 1.37835 1.41399 1.54326 1.86369 2.04799 2.16059 2.28486 2.38909 2.91570 3.20651 3.54788 3.58902 3.67761 3.91891 3.96419 4.14345 4.14583 4.28698 4.30007 4.32379 4.42047 4.42306 4.46026 4.54125 4.55269 4.63620 4.67399 4.73173 4.84151 4.91004 4.92298 4.99476 5.03830 5.09451 5.17840 5.23009 5.27289 5.40596 5.40991 5.65571 5.87600 6.06697 6.09754 6.46125 6.50474 6.59091 7.11997 7.22108 7.55690 8.09874 8.71047 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.003072 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.482936 B = 9110.978561 C =10245.087228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.063 3.937 4 O -0.182 6.182 5 C -0.037 4.037 6 C -0.211 4.211 7 C -0.264 4.264 8 C 0.580 3.420 9 O -0.578 6.578 10 N -0.586 5.586 11 C 0.083 3.917 12 C 0.132 3.868 13 C 0.070 3.930 14 H 0.060 0.940 15 C -0.173 4.173 16 N -0.661 5.661 17 C 0.070 3.930 18 C 0.443 3.557 19 O -0.614 6.614 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.082 0.918 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.247 0.753 35 H 0.185 0.815 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.347 0.653 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.394 0.606 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.354 -9.858 -6.016 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C 0.010 3.990 4 O -0.078 6.078 5 C -0.102 4.102 6 C -0.229 4.229 7 C -0.268 4.268 8 C 0.371 3.629 9 O -0.460 6.460 10 N -0.315 5.315 11 C -0.059 4.059 12 C 0.009 3.991 13 C -0.041 4.041 14 H 0.079 0.921 15 C -0.232 4.232 16 N -0.293 5.293 17 C -0.063 4.063 18 C 0.230 3.770 19 O -0.500 6.500 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.100 0.900 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.262 0.738 35 H 0.202 0.798 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.167 0.833 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.227 0.773 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.573 -9.909 -6.885 21.317 hybrid contribution -1.278 0.556 1.089 1.769 sum 16.295 -9.353 -5.796 19.662 Atomic orbital electron populations 1.21661 0.93396 1.03362 1.01287 1.20399 0.96803 0.85970 1.05455 1.23119 0.97473 0.95107 0.83304 1.83757 1.65214 1.24047 1.34829 1.24731 1.02400 0.86009 0.97018 1.23805 1.05900 0.97956 0.95246 1.21315 1.14546 0.97308 0.93624 1.17513 0.76159 0.84621 0.84651 1.90676 1.51039 1.19973 1.84351 1.47372 1.70060 1.08292 1.05810 1.22277 1.00599 0.80114 1.02915 1.21583 0.95602 1.01504 0.80381 1.21998 0.96722 0.89559 0.95783 0.92124 1.22367 1.02359 1.03402 0.95085 1.60150 1.05799 1.09074 1.54303 1.21441 0.90160 0.93167 1.01525 1.20715 0.82325 0.91564 0.82393 1.90467 1.56752 1.46166 1.56619 1.41956 1.05914 1.09301 1.64101 1.19684 0.91674 0.86241 1.48501 0.90018 1.26065 0.95497 1.03360 0.96477 1.69682 1.03747 1.32736 1.50258 0.84920 0.77609 0.77165 0.78612 1.19720 1.19681 1.19455 0.89561 0.94722 0.92189 0.87799 0.88051 0.73750 0.79755 0.90944 0.91543 0.90208 0.89711 0.88325 0.92989 0.90514 0.90963 0.83339 0.89964 0.92072 0.77304 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.05 -1.08 6.02 29.85 0.18 -0.90 16 3 C 0.06 1.61 6.63 25.26 0.17 1.78 16 4 O -0.18 -4.16 10.52 4.44 0.05 -4.11 16 5 C -0.04 -0.67 12.03 66.89 0.80 0.14 16 6 C -0.21 -4.56 8.87 23.65 0.21 -4.35 16 7 C -0.26 -7.24 6.06 -18.99 -0.12 -7.35 16 8 C 0.58 17.49 7.64 86.65 0.66 18.15 16 9 O -0.58 -19.59 14.47 -4.07 -0.06 -19.65 16 10 N -0.59 -15.29 2.73 -850.73 -2.32 -17.61 16 11 C 0.08 1.95 8.19 127.77 1.05 2.99 16 12 C 0.13 2.99 5.08 86.38 0.44 3.43 16 13 C 0.07 1.75 2.89 44.91 0.13 1.88 16 14 H 0.06 1.79 7.80 -2.39 -0.02 1.78 16 15 C -0.17 -3.37 9.16 71.98 0.66 -2.71 16 16 N -0.66 -20.08 4.25 -495.57 -2.11 -22.19 16 17 C 0.07 2.48 5.97 85.56 0.51 3.00 16 18 C 0.44 20.98 7.82 87.66 0.69 21.66 16 19 O -0.61 -32.75 15.78 -3.06 -0.05 -32.80 16 20 N -0.58 -29.86 5.29 -306.98 -1.62 -31.48 16 21 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -50.48 13.05 21.66 0.28 -50.19 16 25 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 2.50 6.37 -2.38 -0.02 2.48 16 34 H 0.25 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.19 3.28 4.87 -2.91 -0.01 3.26 16 36 H 0.07 1.27 7.34 -2.39 -0.02 1.26 16 37 H 0.07 1.73 5.37 -2.39 -0.01 1.71 16 38 H 0.08 2.05 7.08 -2.39 -0.02 2.03 16 39 H 0.08 1.92 7.51 -2.39 -0.02 1.90 16 40 H 0.10 1.77 8.07 -2.39 -0.02 1.75 16 41 H 0.05 1.10 7.45 -2.39 -0.02 1.08 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 44 H 0.35 10.56 8.17 -89.70 -0.73 9.82 16 45 H 0.08 2.96 8.06 -2.39 -0.02 2.94 16 46 H 0.06 1.96 7.44 -2.39 -0.02 1.95 16 47 H 0.39 19.77 7.90 -92.70 -0.73 19.04 16 48 H 0.28 14.18 8.31 -92.72 -0.77 13.41 16 Total: -1.00 -72.01 394.18 3.11 -68.90 By element: Atomic # 1 Polarization: 47.63 SS G_CDS: -0.46 Total: 47.16 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 7.37 Total: 17.03 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -5.77 Total: -121.48 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.06 Total: -56.56 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.01 3.11 -68.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755585701.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.013 kcal (2) G-P(sol) polarization free energy of solvation -72.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds