Wall clock time and date at job start Tue Mar 31 2020 19:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34329 * 126.44067 * 2 1 4 4 N 1.34478 * 107.66796 * 179.97438 * 3 2 1 5 5 C 1.30258 * 108.70056 * 359.97438 * 4 3 2 6 6 C 1.50705 * 125.61823 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.46927 * 90.02920 * 6 5 4 8 8 C 1.42902 * 114.00041 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46961 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00459 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00088 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00417 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.49848 * 324.94224 * 12 11 9 14 14 C 1.53045 * 109.49652 * 85.00092 * 12 11 9 15 15 C 1.53039 * 109.53785 * 181.31810 * 14 12 11 16 16 C 1.53191 * 109.31266 * 298.63372 * 15 14 12 17 17 N 1.46923 * 108.77436 * 54.63829 * 16 15 14 18 18 C 1.36934 * 120.63485 * 126.37037 * 17 16 15 19 19 H 1.08000 * 120.00158 * 208.65209 * 18 17 16 20 20 C 1.38807 * 119.99876 * 28.65402 * 18 17 16 21 21 N 1.31622 * 120.00399 * 14.68003 * 20 18 17 22 22 Si 1.86806 * 120.00130 * 194.68345 * 20 18 17 23 23 H 1.48499 * 109.46840 * 89.99880 * 22 20 18 24 24 H 1.48497 * 109.47073 * 209.99701 * 22 20 18 25 25 H 1.48497 * 109.47061 * 330.00263 * 22 20 18 26 26 C 1.46931 * 118.73638 * 306.39054 * 17 16 15 27 27 H 1.09000 * 109.58354 * 293.81822 * 26 17 16 28 28 C 1.53003 * 109.70602 * 173.46925 * 26 17 16 29 29 O 1.33965 * 108.76231 * 0.23281 * 5 4 3 30 30 H 1.08996 * 109.46909 * 90.00340 * 1 2 3 31 31 H 1.09005 * 109.47082 * 209.99890 * 1 2 3 32 32 H 1.09004 * 109.47256 * 329.99769 * 1 2 3 33 33 H 1.07994 * 126.16842 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47278 * 330.02962 * 6 5 4 35 35 H 1.08998 * 109.46985 * 210.02836 * 6 5 4 36 36 H 1.09000 * 109.47061 * 60.00166 * 8 7 6 37 37 H 1.08997 * 109.47211 * 300.00142 * 8 7 6 38 38 H 0.97006 * 119.99946 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.46097 * 61.29702 * 14 12 11 40 40 H 1.09007 * 109.44736 * 301.33165 * 14 12 11 41 41 H 1.09000 * 109.49769 * 178.67862 * 15 14 12 42 42 H 1.09002 * 109.52570 * 58.60347 * 15 14 12 43 43 H 1.09002 * 109.58302 * 174.41725 * 16 15 14 44 44 H 1.08996 * 109.58614 * 294.84784 * 16 15 14 45 45 H 0.96996 * 120.00742 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.46859 * 300.64328 * 28 26 17 47 47 H 1.09004 * 109.47150 * 60.63228 * 28 26 17 48 48 H 1.08994 * 109.47535 * 180.63689 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6479 0.0006 5 6 3.5765 -0.6547 0.0015 6 6 4.8005 -1.5339 0.0018 7 8 5.1872 -1.8114 1.3492 8 6 6.3439 -2.6430 1.4624 9 6 6.6597 -2.8686 2.9185 10 8 5.9627 -2.3672 3.7750 11 7 7.7168 -3.6277 3.2690 12 6 8.0236 -3.8476 4.6846 13 1 7.7839 -2.9487 5.2526 14 6 7.1935 -5.0208 5.2108 15 6 7.4888 -5.2304 6.6977 16 6 8.9721 -5.5688 6.8769 17 7 9.7773 -4.5150 6.2445 18 6 10.7552 -3.8662 6.9499 19 1 11.0177 -2.8491 6.6988 20 6 11.4094 -4.5156 7.9877 21 7 11.3088 -5.8219 8.1139 22 14 12.4325 -3.5358 9.2054 23 1 11.5764 -3.1108 10.3419 24 1 13.5435 -4.3812 9.7115 25 1 12.9907 -2.3365 8.5306 26 6 9.5128 -4.1704 4.8409 27 1 9.7729 -5.0145 4.2022 28 6 10.3464 -2.9505 4.4433 29 8 2.3075 -1.0840 -0.0037 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9821 2.1112 0.0004 34 1 5.6149 -1.0232 -0.5121 35 1 4.5764 -2.4689 -0.5118 36 1 7.1904 -2.1557 0.9786 37 1 6.1514 -3.6009 0.9792 38 1 8.2741 -4.0291 2.5840 39 1 7.4510 -5.9245 4.6585 40 1 6.1335 -4.8038 5.0781 41 1 6.8799 -6.0509 7.0774 42 1 7.2546 -4.3189 7.2477 43 1 9.2090 -5.6215 7.9395 44 1 9.1879 -6.5269 6.4042 45 1 11.7662 -6.2759 8.8389 46 1 10.0887 -2.1091 5.0865 47 1 11.4057 -3.1822 4.5553 48 1 10.1390 -2.6913 3.4052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755715760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:23 Heat of formation + Delta-G solvation = -32.826523 kcal Electronic energy + Delta-G solvation = -28998.758200 eV Core-core repulsion = 24863.569523 eV Total energy + Delta-G solvation = -4135.188677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.64863 -39.88682 -38.30549 -37.27974 -35.05020 -34.30615 -33.12505 -32.59017 -31.72463 -30.23216 -29.26495 -27.52624 -26.03050 -25.41453 -24.94662 -22.65190 -22.18886 -21.43375 -20.70237 -20.30239 -19.40040 -17.83774 -17.50877 -16.88098 -16.59415 -16.48133 -16.29108 -15.48398 -15.09430 -14.97012 -14.74482 -14.36595 -13.93410 -13.75652 -13.67512 -13.53877 -13.44253 -13.30415 -12.90942 -12.77915 -12.56468 -12.38623 -12.25248 -11.70435 -11.62474 -11.54444 -11.12267 -10.90670 -10.85342 -10.77473 -10.56369 -10.30018 -10.18806 -10.12567 -10.02436 -9.87528 -9.57856 -9.36281 -9.06797 -8.69185 -8.45505 -6.68939 -5.79330 -3.23967 0.97564 2.08459 2.33489 2.75042 2.94768 3.38317 3.45475 3.45854 3.57916 4.10266 4.34031 4.48664 4.56567 4.61179 4.68752 4.79972 4.87785 4.93329 4.95185 5.05253 5.16190 5.29126 5.38684 5.48628 5.51676 5.60374 5.68880 5.79051 5.93844 5.96494 6.07625 6.20700 6.32405 6.39347 6.50804 6.54103 6.62998 6.71184 6.75632 6.86332 6.97592 7.06575 7.38993 7.41198 7.68307 7.71223 7.81316 8.39251 8.45527 9.19912 9.82440 10.38023 11.29032 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.001936 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.203895 B =14460.506490 C =14662.553561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.356 6.356 8 C 0.045 3.955 9 C 0.511 3.489 10 O -0.520 6.520 11 N -0.717 5.717 12 C 0.132 3.868 13 H 0.086 0.914 14 C -0.117 4.117 15 C -0.141 4.141 16 C 0.168 3.832 17 N -0.582 5.582 18 C -0.251 4.251 19 H 0.071 0.929 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.168 3.832 27 H 0.028 0.972 28 C -0.137 4.137 29 O -0.194 6.194 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.396 0.604 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.019 0.981 45 H 0.253 0.747 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.380 6.172 -20.337 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.184 4.184 4 N -0.189 5.189 5 C -0.018 4.018 6 C 0.083 3.917 7 O -0.273 6.273 8 C -0.035 4.035 9 C 0.295 3.705 10 O -0.394 6.394 11 N -0.369 5.369 12 C 0.027 3.973 13 H 0.105 0.895 14 C -0.156 4.156 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.305 5.305 18 C -0.380 4.380 19 H 0.089 0.911 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.060 3.940 27 H 0.046 0.954 28 C -0.195 4.195 29 O -0.081 6.081 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.230 0.770 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.329 6.810 -19.400 26.256 hybrid contribution 0.247 -0.239 0.124 0.366 sum -16.082 6.571 -19.276 25.949 Atomic orbital electron populations 1.20313 0.83733 1.04724 1.03845 1.23582 0.95201 0.84535 1.06016 1.23132 0.87591 1.00535 1.07126 1.70419 1.23306 1.09052 1.16082 1.25523 0.83881 0.89942 1.02465 1.20476 0.89052 0.96386 0.85754 1.88092 1.45727 1.69807 1.23686 1.22316 0.89322 0.95780 0.96079 1.20031 0.81321 0.79285 0.89895 1.90750 1.48660 1.48454 1.51577 1.46017 1.29617 1.51598 1.09678 1.21822 0.97591 0.99009 0.78889 0.89548 1.21768 0.98686 0.97592 0.97536 1.22193 1.00742 1.00711 0.94407 1.20879 0.85038 0.89463 1.00344 1.44041 1.38470 1.42749 1.05261 1.19195 1.11845 0.94995 1.11982 0.91107 1.25069 0.98322 0.95132 1.01044 1.70011 1.45793 1.06511 1.32472 0.86276 0.79581 0.79204 0.81617 1.21429 1.21798 1.20425 1.20555 0.89695 0.95281 0.88458 0.95440 1.21822 1.01017 0.98116 0.98497 1.84387 1.17714 1.36620 1.69370 0.89668 0.90096 0.88730 0.79697 0.88389 0.89926 0.89642 0.89827 0.77000 0.92737 0.93203 0.93000 0.92521 0.89067 0.96310 0.93647 0.92632 0.91759 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 36.01 0.38 0.04 16 2 C -0.04 -0.37 7.39 -35.69 -0.26 -0.64 16 3 C -0.04 -0.45 11.80 -17.77 -0.21 -0.66 16 4 N -0.46 -5.91 11.29 -11.10 -0.13 -6.03 16 5 C 0.19 2.25 7.97 -12.94 -0.10 2.15 16 6 C 0.16 1.46 6.56 36.01 0.24 1.70 16 7 O -0.36 -4.59 9.86 -55.14 -0.54 -5.13 16 8 C 0.04 0.45 6.42 36.01 0.23 0.68 16 9 C 0.51 7.58 7.87 -10.99 -0.09 7.50 16 10 O -0.52 -10.51 16.16 -14.35 -0.23 -10.74 16 11 N -0.72 -9.88 4.57 -53.69 -0.25 -10.13 16 12 C 0.13 2.36 2.00 -67.81 -0.14 2.23 16 13 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 14 C -0.12 -2.10 5.46 -26.69 -0.15 -2.25 16 15 C -0.14 -2.79 6.08 -26.61 -0.16 -2.96 16 16 C 0.17 3.96 5.29 -3.71 -0.02 3.94 16 17 N -0.58 -14.04 2.99 -164.78 -0.49 -14.53 16 18 C -0.25 -6.63 8.63 -15.06 -0.13 -6.76 16 19 H 0.07 1.84 6.20 -52.49 -0.33 1.51 16 20 C 0.00 0.08 4.97 -17.43 -0.09 -0.01 16 21 N -0.90 -25.66 11.09 55.49 0.62 -25.05 16 22 Si 0.90 21.54 29.58 -169.99 -5.03 16.52 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.17 3.30 3.03 -67.60 -0.20 3.09 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 C -0.14 -2.48 7.84 37.16 0.29 -2.19 16 29 O -0.19 -2.26 10.78 5.36 0.06 -2.20 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.19 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 2.41 6.02 -51.93 -0.31 2.10 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.05 1.08 7.41 -51.93 -0.38 0.69 16 47 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 48 H 0.04 0.57 7.78 -51.93 -0.40 0.16 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -35.96 392.84 -8.11 -44.07 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.62 Total: 1.44 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.41 Total: 5.87 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.25 Total: -55.74 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.72 Total: -18.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.96 -8.11 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.248 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds