Wall clock time and date at job start Tue Mar 31 2020 19:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34329 * 126.44067 * 2 1 4 4 N 1.34478 * 107.66796 * 179.97438 * 3 2 1 5 5 C 1.30258 * 108.70056 * 359.97438 * 4 3 2 6 6 C 1.50705 * 125.61823 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.46927 * 90.02920 * 6 5 4 8 8 C 1.42902 * 114.00041 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46961 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00459 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00088 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00417 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.49848 * 324.94224 * 12 11 9 14 14 C 1.53045 * 109.49652 * 85.00092 * 12 11 9 15 15 C 1.53039 * 109.53785 * 181.31810 * 14 12 11 16 16 C 1.53191 * 109.31266 * 298.63372 * 15 14 12 17 17 N 1.46923 * 108.77436 * 54.63829 * 16 15 14 18 18 C 1.36934 * 120.63485 * 126.37037 * 17 16 15 19 19 H 1.08000 * 120.00158 * 208.65209 * 18 17 16 20 20 C 1.38807 * 119.99876 * 28.65402 * 18 17 16 21 21 N 1.31622 * 120.00399 * 14.68003 * 20 18 17 22 22 Si 1.86806 * 120.00130 * 194.68345 * 20 18 17 23 23 H 1.48499 * 109.46840 * 89.99880 * 22 20 18 24 24 H 1.48497 * 109.47073 * 209.99701 * 22 20 18 25 25 H 1.48497 * 109.47061 * 330.00263 * 22 20 18 26 26 C 1.46931 * 118.73638 * 306.39054 * 17 16 15 27 27 H 1.09000 * 109.58354 * 293.81822 * 26 17 16 28 28 C 1.53003 * 109.70602 * 173.46925 * 26 17 16 29 29 O 1.33965 * 108.76231 * 0.23281 * 5 4 3 30 30 H 1.08996 * 109.46909 * 90.00340 * 1 2 3 31 31 H 1.09005 * 109.47082 * 209.99890 * 1 2 3 32 32 H 1.09004 * 109.47256 * 329.99769 * 1 2 3 33 33 H 1.07994 * 126.16842 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47278 * 330.02962 * 6 5 4 35 35 H 1.08998 * 109.46985 * 210.02836 * 6 5 4 36 36 H 1.09000 * 109.47061 * 60.00166 * 8 7 6 37 37 H 1.08997 * 109.47211 * 300.00142 * 8 7 6 38 38 H 0.97006 * 119.99946 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.46097 * 61.29702 * 14 12 11 40 40 H 1.09007 * 109.44736 * 301.33165 * 14 12 11 41 41 H 1.09000 * 109.49769 * 178.67862 * 15 14 12 42 42 H 1.09002 * 109.52570 * 58.60347 * 15 14 12 43 43 H 1.09002 * 109.58302 * 174.41725 * 16 15 14 44 44 H 1.08996 * 109.58614 * 294.84784 * 16 15 14 45 45 H 0.96996 * 120.00742 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.46859 * 300.64328 * 28 26 17 47 47 H 1.09004 * 109.47150 * 60.63228 * 28 26 17 48 48 H 1.08994 * 109.47535 * 180.63689 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6479 0.0006 5 6 3.5765 -0.6547 0.0015 6 6 4.8005 -1.5339 0.0018 7 8 5.1872 -1.8114 1.3492 8 6 6.3439 -2.6430 1.4624 9 6 6.6597 -2.8686 2.9185 10 8 5.9627 -2.3672 3.7750 11 7 7.7168 -3.6277 3.2690 12 6 8.0236 -3.8476 4.6846 13 1 7.7839 -2.9487 5.2526 14 6 7.1935 -5.0208 5.2108 15 6 7.4888 -5.2304 6.6977 16 6 8.9721 -5.5688 6.8769 17 7 9.7773 -4.5150 6.2445 18 6 10.7552 -3.8662 6.9499 19 1 11.0177 -2.8491 6.6988 20 6 11.4094 -4.5156 7.9877 21 7 11.3088 -5.8219 8.1139 22 14 12.4325 -3.5358 9.2054 23 1 11.5764 -3.1108 10.3419 24 1 13.5435 -4.3812 9.7115 25 1 12.9907 -2.3365 8.5306 26 6 9.5128 -4.1704 4.8409 27 1 9.7729 -5.0145 4.2022 28 6 10.3464 -2.9505 4.4433 29 8 2.3075 -1.0840 -0.0037 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9821 2.1112 0.0004 34 1 5.6149 -1.0232 -0.5121 35 1 4.5764 -2.4689 -0.5118 36 1 7.1904 -2.1557 0.9786 37 1 6.1514 -3.6009 0.9792 38 1 8.2741 -4.0291 2.5840 39 1 7.4510 -5.9245 4.6585 40 1 6.1335 -4.8038 5.0781 41 1 6.8799 -6.0509 7.0774 42 1 7.2546 -4.3189 7.2477 43 1 9.2090 -5.6215 7.9395 44 1 9.1879 -6.5269 6.4042 45 1 11.7662 -6.2759 8.8389 46 1 10.0887 -2.1091 5.0865 47 1 11.4057 -3.1822 4.5553 48 1 10.1390 -2.6913 3.4052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755715760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:22 Heat of formation + Delta-G solvation = -59.942255 kcal Electronic energy + Delta-G solvation = -28999.934027 eV Core-core repulsion = 24863.569523 eV Total energy + Delta-G solvation = -4136.364504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.39748 -41.11898 -39.51664 -38.50556 -35.88419 -35.83909 -34.27693 -33.72075 -33.41782 -31.43906 -30.37562 -28.58819 -27.51788 -26.78559 -26.06621 -23.80606 -23.38896 -22.33106 -22.17908 -21.54850 -21.04664 -18.75462 -18.34404 -18.24094 -17.75132 -17.48639 -17.26629 -17.03158 -16.38841 -15.96364 -15.82089 -15.57101 -15.43316 -15.31959 -14.85774 -14.68616 -14.50616 -14.26839 -14.14232 -13.88650 -13.37395 -13.29911 -13.24667 -13.15949 -12.97876 -12.82422 -12.69195 -12.51631 -12.45426 -12.35200 -11.99290 -11.81117 -11.77206 -11.64933 -11.60941 -11.18586 -10.87377 -10.80811 -10.52065 -10.00540 -9.76839 -8.65101 -7.84561 -5.30330 0.23685 1.36264 1.46486 1.49259 1.56270 1.63256 1.64009 1.97720 2.52520 2.84318 3.30432 3.32525 3.62784 3.76005 3.79452 3.93017 4.00790 4.04468 4.10993 4.20923 4.22219 4.26786 4.35679 4.37695 4.49638 4.53966 4.62704 4.63672 4.66328 4.78496 4.89303 4.94813 4.98886 5.04422 5.13543 5.13809 5.23177 5.25694 5.30284 5.47605 5.50154 5.61798 5.71099 5.78043 5.86996 6.42733 6.62838 6.64140 7.17245 7.32420 7.87988 8.38430 9.22008 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.001936 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.203895 B =14460.506490 C =14662.553561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.040 4.040 3 C -0.068 4.068 4 N -0.491 5.491 5 C 0.166 3.834 6 C 0.160 3.840 7 O -0.399 6.399 8 C 0.052 3.948 9 C 0.506 3.494 10 O -0.582 6.582 11 N -0.701 5.701 12 C 0.147 3.853 13 H 0.051 0.949 14 C -0.109 4.109 15 C -0.131 4.131 16 C 0.175 3.825 17 N -0.601 5.601 18 C -0.251 4.251 19 H 0.072 0.928 20 C -0.050 4.050 21 N -0.933 5.933 22 Si 0.960 3.040 23 H -0.291 1.291 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.165 3.835 27 H 0.041 0.959 28 C -0.129 4.129 29 O -0.210 6.210 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.209 0.791 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.418 0.582 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.056 0.944 44 H 0.007 0.993 45 H 0.248 0.752 46 H 0.036 0.964 47 H 0.049 0.951 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.169 6.428 -23.171 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C -0.206 4.206 4 N -0.223 5.223 5 C -0.040 4.040 6 C 0.083 3.917 7 O -0.318 6.318 8 C -0.027 4.027 9 C 0.293 3.707 10 O -0.461 6.461 11 N -0.355 5.355 12 C 0.041 3.959 13 H 0.069 0.931 14 C -0.147 4.147 15 C -0.171 4.171 16 C 0.049 3.951 17 N -0.325 5.325 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.245 4.245 21 N -0.579 5.579 22 Si 0.789 3.211 23 H -0.218 1.218 24 H -0.221 1.221 25 H -0.193 1.193 26 C 0.058 3.942 27 H 0.058 0.942 28 C -0.186 4.186 29 O -0.097 6.097 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.226 0.774 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.256 0.744 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.025 0.975 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.108 7.066 -22.304 28.984 hybrid contribution 0.409 -0.273 0.950 1.070 sum -16.700 6.793 -21.354 27.947 Atomic orbital electron populations 1.20554 0.80643 1.05781 1.05466 1.24434 0.96870 0.83823 1.04217 1.23630 0.87087 1.02058 1.07845 1.70387 1.24880 1.09983 1.17024 1.26203 0.84775 0.90261 1.02764 1.20817 0.88638 0.97796 0.84408 1.88016 1.46901 1.70697 1.26157 1.22430 0.90013 0.98075 0.92176 1.21001 0.80129 0.77706 0.91848 1.90732 1.50696 1.50803 1.53843 1.45731 1.29948 1.51517 1.08297 1.21282 0.96178 0.97349 0.81137 0.93080 1.21682 0.98695 0.98301 0.96069 1.22038 0.98411 1.00561 0.96096 1.20661 0.87163 0.89125 0.98133 1.44277 1.38253 1.42618 1.07342 1.19457 1.11471 0.95154 1.12036 0.91040 1.25736 1.00039 0.95945 1.02815 1.70147 1.47111 1.07724 1.32965 0.85366 0.78009 0.78199 0.79492 1.21849 1.22120 1.19350 1.20735 0.91031 0.96223 0.86181 0.94178 1.21747 0.99701 0.96590 1.00598 1.84391 1.18088 1.37611 1.69571 0.87607 0.89920 0.86717 0.77388 0.86244 0.86621 0.85915 0.85574 0.74425 0.90997 0.93072 0.91014 0.94224 0.92556 0.97468 0.94247 0.94523 0.93180 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.43 71.24 0.74 0.23 16 2 C -0.04 -0.71 7.39 24.79 0.18 -0.53 16 3 C -0.07 -1.33 11.80 83.39 0.98 -0.35 16 4 N -0.49 -12.52 11.29 -303.83 -3.43 -15.95 16 5 C 0.17 3.83 7.97 88.34 0.70 4.54 16 6 C 0.16 2.51 6.56 71.24 0.47 2.98 16 7 O -0.40 -9.46 9.86 -129.94 -1.28 -10.74 16 8 C 0.05 0.83 6.42 71.24 0.46 1.29 16 9 C 0.51 13.96 7.87 87.66 0.69 14.65 16 10 O -0.58 -23.49 16.16 16.01 0.26 -23.23 16 11 N -0.70 -17.44 4.57 -442.18 -2.02 -19.46 16 12 C 0.15 5.12 2.00 45.07 0.09 5.21 16 13 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 14 C -0.11 -3.78 5.46 30.62 0.17 -3.61 16 15 C -0.13 -5.24 6.08 30.67 0.19 -5.05 16 16 C 0.17 8.40 5.29 86.36 0.46 8.86 16 17 N -0.60 -29.29 2.99 -675.25 -2.02 -31.31 16 18 C -0.25 -13.45 8.63 84.03 0.73 -12.73 16 19 H 0.07 3.75 6.20 -2.91 -0.02 3.73 16 20 C -0.05 -2.77 4.97 84.86 0.42 -2.35 16 21 N -0.93 -54.42 11.09 21.65 0.24 -54.18 16 22 Si 0.96 45.09 29.58 68.60 2.03 47.12 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.17 6.30 3.03 44.97 0.14 6.44 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 C -0.13 -4.48 7.84 71.98 0.56 -3.92 16 29 O -0.21 -4.72 10.78 -3.74 -0.04 -4.77 16 30 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.42 6.87 8.60 -92.70 -0.80 6.07 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 3.10 6.02 -2.39 -0.01 3.08 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 46 H 0.04 1.39 7.41 -2.39 -0.02 1.38 16 47 H 0.05 1.87 7.66 -2.39 -0.02 1.86 16 48 H 0.08 2.09 7.78 -2.39 -0.02 2.07 16 Total: -1.00 -83.36 392.84 0.88 -82.47 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.17 Total: 14.39 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.98 Total: 15.65 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -7.23 Total: -120.90 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -1.06 Total: -38.74 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -83.36 0.88 -82.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.532 kcal (2) G-P(sol) polarization free energy of solvation -83.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds