Wall clock time and date at job start Tue Mar 31 2020 19:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34337 * 126.44535 * 2 1 4 4 N 1.34484 * 107.66681 * 179.76957 * 3 2 1 5 5 C 1.30256 * 108.69718 * 0.41897 * 4 3 2 6 6 C 1.50704 * 125.61216 * 179.84489 * 5 4 3 7 7 O 1.42896 * 109.47627 * 89.69280 * 6 5 4 8 8 C 1.42898 * 114.00223 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47220 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99973 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00460 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00412 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.49573 * 34.79278 * 12 11 9 14 14 C 1.53039 * 109.49931 * 274.72492 * 12 11 9 15 15 C 1.53036 * 109.53478 * 178.68084 * 14 12 11 16 16 C 1.53192 * 109.31561 * 61.36990 * 15 14 12 17 17 N 1.46930 * 108.77170 * 305.36225 * 16 15 14 18 18 C 1.36940 * 120.63004 * 233.61273 * 17 16 15 19 19 H 1.07995 * 120.00203 * 150.16759 * 18 17 16 20 20 C 1.38816 * 119.99505 * 330.15466 * 18 17 16 21 21 N 1.31612 * 120.00403 * 344.50283 * 20 18 17 22 22 Si 1.86800 * 119.99588 * 164.49555 * 20 18 17 23 23 H 1.48505 * 109.46971 * 90.00434 * 22 20 18 24 24 H 1.48499 * 109.47154 * 210.00329 * 22 20 18 25 25 H 1.48502 * 109.47319 * 330.00488 * 22 20 18 26 26 C 1.46928 * 118.74117 * 53.60743 * 17 16 15 27 27 H 1.08993 * 109.58542 * 66.17612 * 26 17 16 28 28 C 1.52996 * 109.58632 * 186.60610 * 26 17 16 29 29 O 1.33957 * 108.76722 * 359.57587 * 5 4 3 30 30 H 1.08996 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46780 * 300.00510 * 1 2 3 32 32 H 1.09003 * 109.46785 * 60.00112 * 1 2 3 33 33 H 1.07998 * 126.16380 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47042 * 329.68578 * 6 5 4 35 35 H 1.09004 * 109.46463 * 209.69659 * 6 5 4 36 36 H 1.08996 * 109.47009 * 59.99745 * 8 7 6 37 37 H 1.09007 * 109.47057 * 299.99976 * 8 7 6 38 38 H 0.97001 * 119.99158 * 359.71926 * 11 9 8 39 39 H 1.08998 * 109.46095 * 298.70176 * 14 12 11 40 40 H 1.09000 * 109.45792 * 58.66129 * 14 12 11 41 41 H 1.09005 * 109.49418 * 181.31430 * 15 14 12 42 42 H 1.09003 * 109.50396 * 301.41134 * 15 14 12 43 43 H 1.09004 * 109.58984 * 65.14429 * 16 15 14 44 44 H 1.09001 * 109.59011 * 185.57748 * 16 15 14 45 45 H 0.97006 * 120.00250 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.47024 * 179.28768 * 28 26 17 47 47 H 1.08992 * 109.47493 * 299.28624 * 28 26 17 48 48 H 1.09006 * 109.47526 * 59.29442 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0052 5 6 3.5764 -0.6548 -0.0008 6 6 4.8004 -1.5341 -0.0012 7 8 5.1877 -1.8123 1.3458 8 6 6.3443 -2.6439 1.4581 9 6 6.6600 -2.8714 2.9140 10 8 5.9633 -2.3703 3.7711 11 7 7.7170 -3.6309 3.2638 12 6 8.0242 -3.8516 4.6791 13 1 7.0964 -3.9068 5.2484 14 6 8.8770 -2.6939 5.2032 15 6 9.1709 -2.9071 6.6899 16 6 9.9594 -4.2082 6.8692 17 7 9.2119 -5.3047 6.2385 18 6 8.9052 -6.4369 6.9452 19 1 8.0121 -6.9960 6.7084 20 6 9.7425 -6.8661 7.9659 21 7 10.9636 -6.3844 8.0618 22 14 9.1360 -8.1271 9.2034 23 1 9.4467 -9.4932 8.7107 24 1 9.8113 -7.9056 10.5073 25 1 7.6679 -7.9851 9.3758 26 6 8.7997 -5.1635 4.8354 27 1 9.6818 -5.1449 4.1955 28 6 7.9027 -6.3393 4.4435 29 8 2.3075 -1.0840 -0.0004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9822 2.1112 0.0004 34 1 5.6146 -1.0232 -0.5153 35 1 4.5760 -2.4687 -0.5153 36 1 7.1906 -2.1564 0.9743 37 1 6.1516 -3.6016 0.9746 38 1 8.2722 -4.0344 2.5783 39 1 9.8151 -2.6543 4.6497 40 1 8.3374 -1.7563 5.0705 41 1 9.7585 -2.0705 7.0682 42 1 8.2325 -2.9715 7.2408 43 1 10.9362 -4.1118 6.3950 44 1 10.0855 -4.4157 7.9318 45 1 11.5488 -6.6846 8.7748 46 1 7.5878 -6.2261 3.4061 47 1 8.4562 -7.2716 4.5553 48 1 7.0250 -6.3580 5.0896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755715761.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:27 Heat of formation + Delta-G solvation = -33.286730 kcal Electronic energy + Delta-G solvation = -29000.520788 eV Core-core repulsion = 24865.312154 eV Total energy + Delta-G solvation = -4135.208634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.64724 -39.88390 -38.30359 -37.27697 -35.04888 -34.29996 -33.11963 -32.59452 -31.71714 -30.23436 -29.27274 -27.52575 -26.02768 -25.41394 -24.94148 -22.64651 -22.19327 -21.43418 -20.70167 -20.30107 -19.40285 -17.83619 -17.50183 -16.88365 -16.62156 -16.45131 -16.27349 -15.47955 -15.09317 -14.94614 -14.80103 -14.29794 -13.93098 -13.76358 -13.71474 -13.54109 -13.45068 -13.29830 -12.90671 -12.77167 -12.58124 -12.38644 -12.24604 -11.70450 -11.62316 -11.54617 -11.11816 -10.93196 -10.85338 -10.74333 -10.58026 -10.30386 -10.18641 -10.12974 -10.04758 -9.87493 -9.58414 -9.35471 -9.06265 -8.69212 -8.45927 -6.67230 -5.80429 -3.24941 0.97719 2.08016 2.34452 2.75132 2.94816 3.36647 3.44267 3.46888 3.58174 4.10348 4.34791 4.48407 4.56921 4.61164 4.68924 4.80046 4.88297 4.93476 4.95598 5.04225 5.16105 5.29209 5.38580 5.49395 5.51501 5.60507 5.69728 5.79242 5.94067 5.96714 6.07913 6.20709 6.32279 6.38970 6.51093 6.54330 6.63120 6.71231 6.75547 6.86249 6.97658 7.06720 7.38984 7.39726 7.65841 7.71185 7.81158 8.39294 8.45497 9.19316 9.81999 10.38575 11.28291 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.001959 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.932276 B =14288.596779 C =14629.365375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.356 6.356 8 C 0.045 3.955 9 C 0.511 3.489 10 O -0.520 6.520 11 N -0.717 5.717 12 C 0.132 3.868 13 H 0.086 0.914 14 C -0.117 4.117 15 C -0.141 4.141 16 C 0.170 3.830 17 N -0.582 5.582 18 C -0.252 4.252 19 H 0.070 0.930 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.168 3.832 27 H 0.028 0.972 28 C -0.136 4.136 29 O -0.194 6.194 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.396 0.604 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.087 0.913 45 H 0.254 0.746 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.529 10.317 -20.226 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.185 4.185 4 N -0.189 5.189 5 C -0.019 4.019 6 C 0.083 3.917 7 O -0.273 6.273 8 C -0.035 4.035 9 C 0.295 3.705 10 O -0.395 6.395 11 N -0.369 5.369 12 C 0.027 3.973 13 H 0.104 0.896 14 C -0.156 4.156 15 C -0.180 4.180 16 C 0.044 3.956 17 N -0.305 5.305 18 C -0.382 4.382 19 H 0.087 0.913 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.060 3.940 27 H 0.046 0.954 28 C -0.194 4.194 29 O -0.080 6.080 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.230 0.770 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.462 10.983 -19.272 25.948 hybrid contribution -0.388 -1.160 0.136 1.231 sum -13.849 9.823 -19.136 25.583 Atomic orbital electron populations 1.20320 0.83735 1.04577 1.04038 1.23588 0.95207 0.84522 1.05960 1.23115 0.87596 1.00556 1.07199 1.70420 1.23307 1.09060 1.16079 1.25523 0.83889 0.89945 1.02507 1.20478 0.89039 0.96403 0.85755 1.88091 1.45732 1.69789 1.23707 1.22315 0.89285 0.95814 0.96078 1.20034 0.81151 0.79452 0.89899 1.90753 1.49032 1.48138 1.51536 1.46014 1.29714 1.51486 1.09685 1.21823 0.99670 0.96916 0.78898 0.89563 1.21764 0.98914 0.97420 0.97496 1.22188 1.01206 1.00174 0.94466 1.20833 0.91229 0.83489 1.00004 1.44029 1.64910 1.16260 1.05289 1.19139 1.03654 1.02469 1.12931 0.91266 1.25088 0.94705 0.98527 1.01116 1.70022 1.05388 1.45945 1.33192 0.86321 0.78351 0.81201 0.81038 1.21408 1.21581 1.20436 1.20565 0.94083 0.90851 0.88510 0.95424 1.21818 0.99935 0.99199 0.98443 1.84396 1.17718 1.36618 1.69292 0.90204 0.89026 0.89178 0.79696 0.88421 0.89895 0.89701 0.89771 0.76998 0.92709 0.93151 0.92970 0.92505 0.96234 0.89480 0.93644 0.94330 0.91746 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.43 36.00 0.38 0.04 16 2 C -0.04 -0.37 7.39 -35.69 -0.26 -0.63 16 3 C -0.05 -0.46 11.80 -17.77 -0.21 -0.67 16 4 N -0.46 -5.89 11.29 -11.10 -0.13 -6.01 16 5 C 0.19 2.25 7.97 -12.94 -0.10 2.14 16 6 C 0.16 1.46 6.56 36.01 0.24 1.70 16 7 O -0.36 -4.60 9.86 -55.14 -0.54 -5.14 16 8 C 0.04 0.45 6.42 36.00 0.23 0.68 16 9 C 0.51 7.59 7.87 -10.99 -0.09 7.50 16 10 O -0.52 -10.52 16.16 -14.36 -0.23 -10.75 16 11 N -0.72 -9.89 4.57 -53.69 -0.25 -10.14 16 12 C 0.13 2.37 2.00 -67.81 -0.14 2.23 16 13 H 0.09 1.81 7.57 -51.93 -0.39 1.42 16 14 C -0.12 -2.11 5.46 -26.69 -0.15 -2.26 16 15 C -0.14 -2.79 6.08 -26.61 -0.16 -2.95 16 16 C 0.17 4.00 5.28 -3.71 -0.02 3.98 16 17 N -0.58 -14.02 2.99 -164.77 -0.49 -14.51 16 18 C -0.25 -6.66 8.58 -15.06 -0.13 -6.79 16 19 H 0.07 1.79 6.23 -52.49 -0.33 1.47 16 20 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 21 N -0.90 -25.61 11.23 55.49 0.62 -24.99 16 22 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.17 3.29 3.03 -67.60 -0.21 3.09 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 C -0.14 -2.46 7.84 37.16 0.29 -2.17 16 29 O -0.19 -2.27 10.77 5.38 0.06 -2.21 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.04 0.55 7.79 -51.93 -0.40 0.15 16 47 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 48 H 0.05 1.07 7.40 -51.93 -0.38 0.68 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -35.98 393.06 -8.10 -44.08 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.63 Total: 1.40 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.41 Total: 5.92 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.24 Total: -55.65 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.72 Total: -18.10 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.98 -8.10 -44.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715761.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.797 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds