Wall clock time and date at job start Tue Mar 31 2020 19:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34337 * 126.44535 * 2 1 4 4 N 1.34484 * 107.66681 * 179.76957 * 3 2 1 5 5 C 1.30256 * 108.69718 * 0.41897 * 4 3 2 6 6 C 1.50704 * 125.61216 * 179.84489 * 5 4 3 7 7 O 1.42896 * 109.47627 * 89.69280 * 6 5 4 8 8 C 1.42898 * 114.00223 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47220 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99973 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00460 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00412 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.49573 * 34.79278 * 12 11 9 14 14 C 1.53039 * 109.49931 * 274.72492 * 12 11 9 15 15 C 1.53036 * 109.53478 * 178.68084 * 14 12 11 16 16 C 1.53192 * 109.31561 * 61.36990 * 15 14 12 17 17 N 1.46930 * 108.77170 * 305.36225 * 16 15 14 18 18 C 1.36940 * 120.63004 * 233.61273 * 17 16 15 19 19 H 1.07995 * 120.00203 * 150.16759 * 18 17 16 20 20 C 1.38816 * 119.99505 * 330.15466 * 18 17 16 21 21 N 1.31612 * 120.00403 * 344.50283 * 20 18 17 22 22 Si 1.86800 * 119.99588 * 164.49555 * 20 18 17 23 23 H 1.48505 * 109.46971 * 90.00434 * 22 20 18 24 24 H 1.48499 * 109.47154 * 210.00329 * 22 20 18 25 25 H 1.48502 * 109.47319 * 330.00488 * 22 20 18 26 26 C 1.46928 * 118.74117 * 53.60743 * 17 16 15 27 27 H 1.08993 * 109.58542 * 66.17612 * 26 17 16 28 28 C 1.52996 * 109.58632 * 186.60610 * 26 17 16 29 29 O 1.33957 * 108.76722 * 359.57587 * 5 4 3 30 30 H 1.08996 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46780 * 300.00510 * 1 2 3 32 32 H 1.09003 * 109.46785 * 60.00112 * 1 2 3 33 33 H 1.07998 * 126.16380 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47042 * 329.68578 * 6 5 4 35 35 H 1.09004 * 109.46463 * 209.69659 * 6 5 4 36 36 H 1.08996 * 109.47009 * 59.99745 * 8 7 6 37 37 H 1.09007 * 109.47057 * 299.99976 * 8 7 6 38 38 H 0.97001 * 119.99158 * 359.71926 * 11 9 8 39 39 H 1.08998 * 109.46095 * 298.70176 * 14 12 11 40 40 H 1.09000 * 109.45792 * 58.66129 * 14 12 11 41 41 H 1.09005 * 109.49418 * 181.31430 * 15 14 12 42 42 H 1.09003 * 109.50396 * 301.41134 * 15 14 12 43 43 H 1.09004 * 109.58984 * 65.14429 * 16 15 14 44 44 H 1.09001 * 109.59011 * 185.57748 * 16 15 14 45 45 H 0.97006 * 120.00250 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.47024 * 179.28768 * 28 26 17 47 47 H 1.08992 * 109.47493 * 299.28624 * 28 26 17 48 48 H 1.09006 * 109.47526 * 59.29442 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0052 5 6 3.5764 -0.6548 -0.0008 6 6 4.8004 -1.5341 -0.0012 7 8 5.1877 -1.8123 1.3458 8 6 6.3443 -2.6439 1.4581 9 6 6.6600 -2.8714 2.9140 10 8 5.9633 -2.3703 3.7711 11 7 7.7170 -3.6309 3.2638 12 6 8.0242 -3.8516 4.6791 13 1 7.0964 -3.9068 5.2484 14 6 8.8770 -2.6939 5.2032 15 6 9.1709 -2.9071 6.6899 16 6 9.9594 -4.2082 6.8692 17 7 9.2119 -5.3047 6.2385 18 6 8.9052 -6.4369 6.9452 19 1 8.0121 -6.9960 6.7084 20 6 9.7425 -6.8661 7.9659 21 7 10.9636 -6.3844 8.0618 22 14 9.1360 -8.1271 9.2034 23 1 9.4467 -9.4932 8.7107 24 1 9.8113 -7.9056 10.5073 25 1 7.6679 -7.9851 9.3758 26 6 8.7997 -5.1635 4.8354 27 1 9.6818 -5.1449 4.1955 28 6 7.9027 -6.3393 4.4435 29 8 2.3075 -1.0840 -0.0004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9822 2.1112 0.0004 34 1 5.6146 -1.0232 -0.5153 35 1 4.5760 -2.4687 -0.5153 36 1 7.1906 -2.1564 0.9743 37 1 6.1516 -3.6016 0.9746 38 1 8.2722 -4.0344 2.5783 39 1 9.8151 -2.6543 4.6497 40 1 8.3374 -1.7563 5.0705 41 1 9.7585 -2.0705 7.0682 42 1 8.2325 -2.9715 7.2408 43 1 10.9362 -4.1118 6.3950 44 1 10.0855 -4.4157 7.9318 45 1 11.5488 -6.6846 8.7748 46 1 7.5878 -6.2261 3.4061 47 1 8.4562 -7.2716 4.5553 48 1 7.0250 -6.3580 5.0896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755715761.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:26 Heat of formation + Delta-G solvation = -60.401805 kcal Electronic energy + Delta-G solvation = -29001.696586 eV Core-core repulsion = 24865.312154 eV Total energy + Delta-G solvation = -4136.384431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.39775 -41.11747 -39.51523 -38.50416 -35.87857 -35.83778 -34.28424 -33.71806 -33.41047 -31.44807 -30.37803 -28.58615 -27.51433 -26.78023 -26.06810 -23.81201 -23.38544 -22.33036 -22.18070 -21.54905 -21.04944 -18.75504 -18.34100 -18.23043 -17.76896 -17.48645 -17.24146 -17.02558 -16.36868 -16.00839 -15.80961 -15.58413 -15.49472 -15.17164 -14.95241 -14.68552 -14.46366 -14.30578 -14.14302 -13.88408 -13.37071 -13.30676 -13.25837 -13.14580 -12.99048 -12.79330 -12.71073 -12.49816 -12.45305 -12.36941 -12.03011 -11.80802 -11.77398 -11.64912 -11.61169 -11.18161 -10.87299 -10.80673 -10.52338 -10.00559 -9.76274 -8.63472 -7.85411 -5.31183 0.23680 1.35826 1.45789 1.48771 1.57083 1.63708 1.64431 1.97622 2.52467 2.84442 3.30271 3.32391 3.62781 3.76194 3.79607 3.93048 4.00858 4.05063 4.10400 4.20728 4.21973 4.26770 4.35325 4.37599 4.48495 4.53960 4.62428 4.63660 4.67277 4.78525 4.89070 4.94905 4.98750 5.04425 5.13330 5.14510 5.22956 5.25928 5.30370 5.48133 5.49530 5.60154 5.71422 5.76351 5.87041 6.42763 6.62750 6.64097 7.17013 7.32363 7.87631 8.39150 9.21566 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.001959 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.932276 B =14288.596779 C =14629.365375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.040 4.040 3 C -0.068 4.068 4 N -0.490 5.490 5 C 0.166 3.834 6 C 0.160 3.840 7 O -0.399 6.399 8 C 0.052 3.948 9 C 0.506 3.494 10 O -0.582 6.582 11 N -0.701 5.701 12 C 0.148 3.852 13 H 0.052 0.948 14 C -0.109 4.109 15 C -0.131 4.131 16 C 0.177 3.823 17 N -0.601 5.601 18 C -0.253 4.253 19 H 0.071 0.929 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.960 3.040 23 H -0.282 1.282 24 H -0.295 1.295 25 H -0.276 1.276 26 C 0.165 3.835 27 H 0.040 0.960 28 C -0.128 4.128 29 O -0.210 6.210 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.210 0.790 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.418 0.582 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.007 0.993 44 H 0.052 0.948 45 H 0.249 0.751 46 H 0.080 0.920 47 H 0.049 0.951 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 10.359 -23.005 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.206 4.206 4 N -0.222 5.222 5 C -0.041 4.041 6 C 0.083 3.917 7 O -0.318 6.318 8 C -0.027 4.027 9 C 0.293 3.707 10 O -0.461 6.461 11 N -0.355 5.355 12 C 0.041 3.959 13 H 0.070 0.930 14 C -0.148 4.148 15 C -0.171 4.171 16 C 0.051 3.949 17 N -0.325 5.325 18 C -0.383 4.383 19 H 0.088 0.912 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.788 3.212 23 H -0.209 1.209 24 H -0.221 1.221 25 H -0.201 1.201 26 C 0.058 3.942 27 H 0.057 0.943 28 C -0.186 4.186 29 O -0.097 6.097 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.226 0.774 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.256 0.744 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.099 0.901 47 H 0.068 0.932 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.422 11.012 -22.120 28.610 hybrid contribution -0.160 -1.110 0.945 1.466 sum -14.582 9.902 -21.175 27.552 Atomic orbital electron populations 1.20556 0.80677 1.05384 1.05859 1.24437 0.96868 0.83825 1.04212 1.23610 0.87083 1.02063 1.07861 1.70389 1.24856 1.09951 1.16985 1.26204 0.84759 0.90278 1.02823 1.20820 0.88656 0.97786 0.84407 1.88015 1.46918 1.70665 1.26183 1.22429 0.90020 0.98063 0.92180 1.21004 0.79929 0.77903 0.91850 1.90734 1.51028 1.50520 1.53803 1.45730 1.30039 1.51410 1.08310 1.21282 0.97593 0.95900 0.81143 0.93005 1.21682 0.99632 0.97398 0.96098 1.22034 1.00039 0.98903 0.96097 1.20618 0.91354 0.85112 0.97796 1.44268 1.64980 1.15841 1.07374 1.19406 1.03302 1.02617 1.12971 0.91168 1.25762 0.94983 1.00731 1.02947 1.70156 1.06350 1.47563 1.33721 0.85396 0.77762 0.79307 0.78698 1.20894 1.22147 1.20080 1.20743 0.94819 0.92409 0.86220 0.94261 1.21739 0.98508 0.97720 1.00589 1.84400 1.18129 1.37640 1.69517 0.89875 0.87657 0.86689 0.77362 0.86177 0.86687 0.85834 0.85661 0.74431 0.91050 0.93114 0.91017 0.94121 0.97455 0.92941 0.94231 0.90136 0.93198 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.43 71.23 0.74 0.22 16 2 C -0.04 -0.72 7.39 24.79 0.18 -0.53 16 3 C -0.07 -1.33 11.80 83.39 0.98 -0.34 16 4 N -0.49 -12.42 11.29 -303.83 -3.43 -15.85 16 5 C 0.17 3.82 7.97 88.34 0.70 4.52 16 6 C 0.16 2.51 6.56 71.24 0.47 2.98 16 7 O -0.40 -9.48 9.86 -129.94 -1.28 -10.76 16 8 C 0.05 0.83 6.42 71.24 0.46 1.29 16 9 C 0.51 13.98 7.87 87.66 0.69 14.67 16 10 O -0.58 -23.51 16.16 15.98 0.26 -23.25 16 11 N -0.70 -17.48 4.57 -442.16 -2.02 -19.50 16 12 C 0.15 5.14 2.00 45.07 0.09 5.23 16 13 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 14 C -0.11 -3.83 5.46 30.62 0.17 -3.66 16 15 C -0.13 -5.23 6.08 30.67 0.19 -5.05 16 16 C 0.18 8.50 5.28 86.36 0.46 8.96 16 17 N -0.60 -29.26 2.99 -675.21 -2.02 -31.28 16 18 C -0.25 -13.53 8.58 84.03 0.72 -12.81 16 19 H 0.07 3.67 6.23 -2.91 -0.02 3.66 16 20 C -0.05 -2.69 4.94 84.86 0.42 -2.28 16 21 N -0.93 -54.34 11.23 21.65 0.24 -54.09 16 22 Si 0.96 44.91 29.58 68.60 2.03 46.94 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 C 0.16 6.29 3.03 44.97 0.14 6.43 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 C -0.13 -4.43 7.84 71.98 0.56 -3.86 16 29 O -0.21 -4.77 10.77 -3.68 -0.04 -4.81 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.21 2.64 8.06 -2.91 -0.02 2.61 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.42 6.91 8.60 -92.71 -0.80 6.11 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.05 2.87 6.15 -2.39 -0.01 2.86 16 45 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 46 H 0.08 2.07 7.79 -2.38 -0.02 2.05 16 47 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16 48 H 0.04 1.40 7.40 -2.38 -0.02 1.38 16 Total: -1.00 -83.28 393.06 0.88 -82.39 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.17 Total: 14.45 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 6.97 Total: 15.76 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -7.23 Total: -120.73 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.06 Total: -38.82 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -83.28 0.88 -82.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715761.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.993 kcal (2) G-P(sol) polarization free energy of solvation -83.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds