Wall clock time and date at job start Tue Mar 31 2020 20:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47314 * 239.99727 * 2 1 3 5 5 O 1.45202 * 109.47194 * 120.00000 * 2 1 3 6 6 C 1.34640 * 116.99726 * 59.99608 * 5 2 1 7 7 O 1.21513 * 120.00355 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99914 * 179.97438 * 6 5 2 9 9 C 1.46928 * 120.63006 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.77630 * 233.58460 * 9 8 6 11 11 C 1.53045 * 109.31079 * 305.36337 * 10 9 8 12 12 C 1.53041 * 109.53323 * 61.36731 * 11 10 9 13 13 H 1.08993 * 109.49957 * 58.61885 * 12 11 10 14 14 C 1.50708 * 109.49481 * 178.68057 * 12 11 10 15 15 O 1.21294 * 119.99505 * 35.57665 * 14 12 11 16 16 N 1.34767 * 120.00070 * 215.57579 * 14 12 11 17 17 C 1.37099 * 120.00232 * 184.43115 * 16 14 12 18 18 H 1.07999 * 119.99829 * 45.39263 * 17 16 14 19 19 C 1.38949 * 120.00328 * 225.39450 * 17 16 14 20 20 N 1.31416 * 119.99952 * 17.12399 * 19 17 16 21 21 Si 1.86798 * 120.00280 * 197.11814 * 19 17 16 22 22 H 1.48501 * 109.46852 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47194 * 240.00296 * 21 19 17 24 24 H 1.48495 * 109.47107 * 119.99875 * 21 19 17 25 25 C 1.46503 * 120.00367 * 4.43118 * 16 14 12 26 26 C 1.47203 * 109.47104 * 270.15517 * 25 16 14 27 27 N 6.06785 * 84.04818 * 185.26229 * 2 1 3 28 28 C 1.46927 * 120.63276 * 179.97438 * 8 6 5 29 29 H 1.09005 * 109.46843 * 300.00460 * 1 2 3 30 30 H 1.09002 * 109.47138 * 59.99835 * 1 2 3 31 31 H 1.08997 * 109.47654 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46746 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46767 * 299.99852 * 3 2 1 34 34 H 1.08998 * 109.47210 * 60.00170 * 3 2 1 35 35 H 1.08996 * 109.47203 * 300.00981 * 4 2 1 36 36 H 1.09002 * 109.46660 * 60.00146 * 4 2 1 37 37 H 1.08993 * 109.47346 * 180.02562 * 4 2 1 38 38 H 1.09006 * 109.58705 * 113.79338 * 9 8 6 39 39 H 1.08999 * 109.58425 * 353.37576 * 9 8 6 40 40 H 1.09005 * 109.49359 * 185.41517 * 10 9 8 41 41 H 1.09000 * 109.52009 * 65.33311 * 10 9 8 42 42 H 1.08996 * 109.45908 * 301.34619 * 11 10 9 43 43 H 1.08999 * 109.45306 * 181.38318 * 11 10 9 44 44 H 0.97009 * 119.99718 * 3.80788 * 20 19 17 45 45 H 1.09004 * 109.46323 * 30.14793 * 25 16 14 46 46 H 1.08996 * 109.47556 * 150.14671 * 25 16 14 47 47 H 1.09005 * 109.58371 * 6.63057 * 28 8 6 48 48 H 1.09005 * 109.58752 * 246.20506 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9514 -2.5097 0.5036 8 7 2.0679 -2.6658 2.4166 9 6 2.9160 -2.0299 3.4342 10 6 4.1680 -2.8886 3.6392 11 6 3.7493 -4.3216 3.9760 12 6 2.9472 -4.9074 2.8117 13 1 3.5538 -4.8888 1.9063 14 6 2.5631 -6.3294 3.1306 15 8 2.2886 -6.6423 4.2699 16 7 2.5247 -7.2531 2.1501 17 6 2.0881 -8.5239 2.4222 18 1 1.1939 -8.6736 3.0090 19 6 2.7962 -9.6193 1.9430 20 7 4.0351 -9.4715 1.5306 21 14 1.9871 -11.3019 1.8854 22 1 0.5985 -11.2014 2.4020 23 1 2.7604 -12.2521 2.7246 24 1 1.9588 -11.7898 0.4831 25 6 2.9493 -6.8993 0.7933 26 6 1.7935 -6.3970 0.0327 27 7 0.9008 -6.0097 -0.5535 28 6 1.6809 -4.0715 2.5976 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 2.3666 -1.9547 4.3727 39 1 3.2064 -1.0347 3.0978 40 1 4.7589 -2.4800 4.4590 41 1 4.7632 -2.8884 2.7262 42 1 3.1339 -4.3182 4.8756 43 1 4.6382 -4.9289 4.1466 44 1 4.4739 -8.6101 1.6118 45 1 3.7157 -6.1258 0.8427 46 1 3.3548 -7.7814 0.2978 47 1 1.1566 -4.4234 1.7091 48 1 1.0311 -4.1626 3.4680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290181421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:35 Heat of formation + Delta-G solvation = -82.211033 kcal Electronic energy + Delta-G solvation = -31198.767810 eV Core-core repulsion = 27061.437660 eV Total energy + Delta-G solvation = -4137.330150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94209 -39.63825 -38.01759 -36.51109 -36.05461 -34.79956 -34.21055 -32.61983 -31.96746 -30.92146 -27.65776 -27.58227 -27.49517 -25.64001 -25.23895 -23.40270 -22.18971 -20.94357 -19.33976 -19.08708 -18.12189 -17.94171 -16.94866 -16.72076 -16.30426 -16.13706 -15.31666 -14.94430 -14.75744 -14.53277 -14.37818 -13.96629 -13.75117 -13.67486 -13.52783 -13.33145 -13.26168 -13.16137 -12.72251 -12.53457 -12.31162 -12.24788 -12.03749 -11.98912 -11.92768 -11.57205 -11.51813 -11.42190 -11.35033 -11.16992 -10.95566 -10.87915 -10.71468 -10.44219 -10.37532 -10.27102 -9.98954 -9.95780 -9.08611 -8.83818 -8.55875 -8.00376 -6.73874 -4.28733 2.07748 2.86878 3.19105 3.26602 3.32544 3.41642 3.49890 3.55786 3.75566 4.12707 4.49719 4.56623 4.60379 4.63170 4.75244 4.82538 4.86757 4.91960 5.03355 5.17376 5.25554 5.28198 5.35747 5.37124 5.40832 5.47617 5.51922 5.58169 5.62768 5.72376 5.73998 5.78472 5.81328 5.86343 5.90311 6.00676 6.15819 6.18282 6.21562 6.27113 6.41080 6.44717 6.46644 7.37974 7.76363 7.93433 8.17130 8.37263 8.42874 8.67048 9.12959 9.56787 10.52560 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.003461 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.111895 B = 8089.344645 C = 9059.136761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.649 3.351 7 O -0.558 6.558 8 N -0.593 5.593 9 C 0.111 3.889 10 C -0.134 4.134 11 C -0.101 4.101 12 C -0.126 4.126 13 H 0.087 0.913 14 C 0.481 3.519 15 O -0.549 6.549 16 N -0.450 5.450 17 C -0.393 4.393 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.879 5.879 21 Si 1.084 2.916 22 H -0.283 1.283 23 H -0.283 1.283 24 H -0.281 1.281 25 C 0.178 3.822 26 C 0.196 3.804 27 N -0.434 5.434 28 C 0.141 3.859 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.274 0.726 45 H 0.101 0.899 46 H 0.131 0.869 47 H 0.097 0.903 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 18.872 -1.181 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.404 3.596 7 O -0.446 6.446 8 N -0.333 5.333 9 C -0.011 4.011 10 C -0.172 4.172 11 C -0.139 4.139 12 C -0.149 4.149 13 H 0.105 0.895 14 C 0.269 3.731 15 O -0.428 6.428 16 N -0.172 5.172 17 C -0.521 4.521 18 H 0.102 0.898 19 C -0.195 4.195 20 N -0.513 5.513 21 Si 0.909 3.091 22 H -0.208 1.208 23 H -0.209 1.209 24 H -0.207 1.207 25 C 0.051 3.949 26 C -0.123 4.123 27 N -0.113 5.113 28 C 0.019 3.981 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.118 0.882 46 H 0.148 0.852 47 H 0.116 0.884 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.641 17.603 -2.235 17.756 hybrid contribution 0.188 1.478 0.529 1.581 sum 0.828 19.081 -1.705 19.175 Atomic orbital electron populations 1.22512 0.94099 1.05238 1.02206 1.22033 0.94330 0.91393 0.82332 1.21843 1.02155 0.92643 1.02948 1.22514 1.01454 1.03783 0.96344 1.86266 1.71638 1.23792 1.46241 1.17994 0.79129 0.80541 0.81967 1.90964 1.40907 1.70074 1.42678 1.46971 1.52969 1.11914 1.21464 1.21760 0.91223 0.96712 0.91444 1.21957 0.96998 0.95855 1.02391 1.21354 1.00256 0.94630 0.97629 1.21804 0.97896 0.94352 1.00831 0.89469 1.20211 0.81341 0.86049 0.85533 1.90565 1.50981 1.81058 1.20225 1.43450 1.59609 1.10863 1.03316 1.20322 1.11445 0.81015 1.39274 0.89843 1.26563 0.94517 1.03894 0.94483 1.70778 1.09760 1.27613 1.43192 0.83256 0.75195 0.73403 0.77213 1.20831 1.20871 1.20708 1.19328 0.88510 1.01892 0.85206 1.30178 0.95574 0.92834 0.93745 1.81090 1.10354 1.09829 1.10054 1.21523 0.95692 0.77089 1.03754 0.92329 0.91291 0.89244 0.91532 0.90277 0.91587 0.89186 0.91304 0.92248 0.91125 0.89161 0.90234 0.91427 0.90441 0.90991 0.91474 0.88184 0.85190 0.88442 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16 2 C 0.14 1.52 1.13 -90.62 -0.10 1.42 16 3 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 4 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 5 O -0.36 -4.80 8.53 -40.32 -0.34 -5.14 16 6 C 0.65 10.13 7.74 54.06 0.42 10.55 16 7 O -0.56 -10.27 11.29 -19.28 -0.22 -10.49 16 8 N -0.59 -8.61 2.97 -178.53 -0.53 -9.14 16 9 C 0.11 1.23 6.45 -3.71 -0.02 1.21 16 10 C -0.13 -1.42 6.08 -26.61 -0.16 -1.59 16 11 C -0.10 -1.42 4.81 -26.69 -0.13 -1.55 16 12 C -0.13 -2.12 2.24 -91.63 -0.21 -2.33 16 13 H 0.09 1.37 5.63 -51.93 -0.29 1.08 16 14 C 0.48 10.56 6.61 -10.99 -0.07 10.49 16 15 O -0.55 -13.96 16.28 5.55 0.09 -13.87 16 16 N -0.45 -10.36 2.16 -117.93 -0.25 -10.62 16 17 C -0.39 -10.25 8.75 -14.93 -0.13 -10.38 16 18 H 0.08 2.33 7.89 -52.49 -0.41 1.91 16 19 C 0.01 0.31 5.00 -17.47 -0.09 0.23 16 20 N -0.88 -22.57 12.49 55.50 0.69 -21.88 16 21 Si 1.08 23.08 29.95 -169.99 -5.09 17.98 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 25 C 0.18 3.48 4.64 -6.83 -0.03 3.45 16 26 C 0.20 4.03 14.74 -20.76 -0.31 3.72 16 27 N -0.43 -9.56 18.54 42.15 0.78 -8.78 16 28 C 0.14 2.38 5.70 -3.69 -0.02 2.36 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 1.35 5.88 -51.93 -0.31 1.04 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.89 6.93 -51.93 -0.36 0.53 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.27 6.83 6.79 -40.82 -0.28 6.55 16 45 H 0.10 1.61 5.86 -51.93 -0.30 1.30 16 46 H 0.13 2.69 5.77 -51.93 -0.30 2.39 16 47 H 0.10 1.90 5.96 -51.93 -0.31 1.59 16 48 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -31.66 385.19 -6.12 -37.77 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.15 Total: 5.11 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 0.10 Total: 13.24 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.69 Total: -50.41 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.47 Total: -29.50 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.09 Total: 17.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.66 -6.12 -37.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290181421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.439 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds