Wall clock time and date at job start Tue Mar 31 2020 20:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47314 * 239.99727 * 2 1 3 5 5 O 1.45202 * 109.47194 * 120.00000 * 2 1 3 6 6 C 1.34640 * 116.99726 * 59.99608 * 5 2 1 7 7 O 1.21513 * 120.00355 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99914 * 179.97438 * 6 5 2 9 9 C 1.46928 * 120.63006 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.77630 * 233.58460 * 9 8 6 11 11 C 1.53045 * 109.31079 * 305.36337 * 10 9 8 12 12 C 1.53041 * 109.53323 * 61.36731 * 11 10 9 13 13 H 1.08993 * 109.49957 * 58.61885 * 12 11 10 14 14 C 1.50708 * 109.49481 * 178.68057 * 12 11 10 15 15 O 1.21294 * 119.99505 * 35.57665 * 14 12 11 16 16 N 1.34767 * 120.00070 * 215.57579 * 14 12 11 17 17 C 1.37099 * 120.00232 * 184.43115 * 16 14 12 18 18 H 1.07999 * 119.99829 * 45.39263 * 17 16 14 19 19 C 1.38949 * 120.00328 * 225.39450 * 17 16 14 20 20 N 1.31416 * 119.99952 * 17.12399 * 19 17 16 21 21 Si 1.86798 * 120.00280 * 197.11814 * 19 17 16 22 22 H 1.48501 * 109.46852 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47194 * 240.00296 * 21 19 17 24 24 H 1.48495 * 109.47107 * 119.99875 * 21 19 17 25 25 C 1.46503 * 120.00367 * 4.43118 * 16 14 12 26 26 C 1.47203 * 109.47104 * 270.15517 * 25 16 14 27 27 N 6.06785 * 84.04818 * 185.26229 * 2 1 3 28 28 C 1.46927 * 120.63276 * 179.97438 * 8 6 5 29 29 H 1.09005 * 109.46843 * 300.00460 * 1 2 3 30 30 H 1.09002 * 109.47138 * 59.99835 * 1 2 3 31 31 H 1.08997 * 109.47654 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46746 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46767 * 299.99852 * 3 2 1 34 34 H 1.08998 * 109.47210 * 60.00170 * 3 2 1 35 35 H 1.08996 * 109.47203 * 300.00981 * 4 2 1 36 36 H 1.09002 * 109.46660 * 60.00146 * 4 2 1 37 37 H 1.08993 * 109.47346 * 180.02562 * 4 2 1 38 38 H 1.09006 * 109.58705 * 113.79338 * 9 8 6 39 39 H 1.08999 * 109.58425 * 353.37576 * 9 8 6 40 40 H 1.09005 * 109.49359 * 185.41517 * 10 9 8 41 41 H 1.09000 * 109.52009 * 65.33311 * 10 9 8 42 42 H 1.08996 * 109.45908 * 301.34619 * 11 10 9 43 43 H 1.08999 * 109.45306 * 181.38318 * 11 10 9 44 44 H 0.97009 * 119.99718 * 3.80788 * 20 19 17 45 45 H 1.09004 * 109.46323 * 30.14793 * 25 16 14 46 46 H 1.08996 * 109.47556 * 150.14671 * 25 16 14 47 47 H 1.09005 * 109.58371 * 6.63057 * 28 8 6 48 48 H 1.09005 * 109.58752 * 246.20506 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9514 -2.5097 0.5036 8 7 2.0679 -2.6658 2.4166 9 6 2.9160 -2.0299 3.4342 10 6 4.1680 -2.8886 3.6392 11 6 3.7493 -4.3216 3.9760 12 6 2.9472 -4.9074 2.8117 13 1 3.5538 -4.8888 1.9063 14 6 2.5631 -6.3294 3.1306 15 8 2.2886 -6.6423 4.2699 16 7 2.5247 -7.2531 2.1501 17 6 2.0881 -8.5239 2.4222 18 1 1.1939 -8.6736 3.0090 19 6 2.7962 -9.6193 1.9430 20 7 4.0351 -9.4715 1.5306 21 14 1.9871 -11.3019 1.8854 22 1 0.5985 -11.2014 2.4020 23 1 2.7604 -12.2521 2.7246 24 1 1.9588 -11.7898 0.4831 25 6 2.9493 -6.8993 0.7933 26 6 1.7935 -6.3970 0.0327 27 7 0.9008 -6.0097 -0.5535 28 6 1.6809 -4.0715 2.5976 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 2.3666 -1.9547 4.3727 39 1 3.2064 -1.0347 3.0978 40 1 4.7589 -2.4800 4.4590 41 1 4.7632 -2.8884 2.7262 42 1 3.1339 -4.3182 4.8756 43 1 4.6382 -4.9289 4.1466 44 1 4.4739 -8.6101 1.6118 45 1 3.7157 -6.1258 0.8427 46 1 3.3548 -7.7814 0.2978 47 1 1.1566 -4.4234 1.7091 48 1 1.0311 -4.1626 3.4680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290181421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:34 Heat of formation + Delta-G solvation = -100.645608 kcal Electronic energy + Delta-G solvation = -31199.567194 eV Core-core repulsion = 27061.437660 eV Total energy + Delta-G solvation = -4138.129534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10476 -41.17505 -39.28738 -37.98744 -37.52719 -36.61004 -35.23266 -33.98339 -33.52678 -32.24154 -29.41085 -28.39445 -28.29139 -26.96034 -26.76635 -24.86752 -23.25787 -22.19086 -20.75935 -20.29105 -19.95524 -19.15290 -18.59180 -17.97579 -17.67869 -17.28891 -16.79099 -16.27476 -16.15258 -15.59800 -15.52251 -15.48878 -15.30765 -15.03006 -14.98377 -14.69936 -14.46214 -14.38171 -14.02233 -13.72544 -13.67837 -13.36768 -13.29128 -13.13063 -12.94891 -12.92544 -12.86912 -12.69176 -12.52617 -12.39259 -12.28195 -11.98649 -11.96779 -11.93231 -11.84065 -11.63034 -11.41058 -11.09746 -10.95666 -10.48516 -9.93991 -9.85938 -8.74464 -6.31155 0.94734 1.47027 1.53765 1.58160 1.68538 1.73052 1.81915 1.87268 2.38900 2.71194 2.83743 2.92184 3.20456 3.57169 3.65051 3.72553 3.75214 3.78902 3.90521 3.93699 4.03351 4.09358 4.23814 4.33975 4.45736 4.49175 4.55339 4.58528 4.63597 4.71442 4.71956 4.74440 4.81708 4.88052 4.88354 5.03008 5.10767 5.12045 5.26353 5.28997 5.35473 5.37370 5.45117 5.79734 5.90046 6.24626 6.46246 6.56996 6.78810 7.19914 7.21646 7.71695 8.53408 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.003461 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.111895 B = 8089.344645 C = 9059.136761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.131 4.131 4 C -0.180 4.180 5 O -0.356 6.356 6 C 0.646 3.354 7 O -0.591 6.591 8 N -0.591 5.591 9 C 0.107 3.893 10 C -0.121 4.121 11 C -0.098 4.098 12 C -0.113 4.113 13 H 0.101 0.899 14 C 0.476 3.524 15 O -0.590 6.590 16 N -0.463 5.463 17 C -0.418 4.418 18 H 0.053 0.947 19 C -0.014 4.014 20 N -0.888 5.888 21 Si 1.120 2.880 22 H -0.283 1.283 23 H -0.275 1.275 24 H -0.268 1.268 25 C 0.186 3.814 26 C 0.209 3.791 27 N -0.459 5.459 28 C 0.151 3.849 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.272 0.728 45 H 0.140 0.860 46 H 0.125 0.875 47 H 0.068 0.932 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 21.330 -1.480 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.188 4.188 4 C -0.237 4.237 5 O -0.271 6.271 6 C 0.402 3.598 7 O -0.482 6.482 8 N -0.331 5.331 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.136 4.136 12 C -0.135 4.135 13 H 0.119 0.881 14 C 0.266 3.734 15 O -0.472 6.472 16 N -0.185 5.185 17 C -0.545 4.545 18 H 0.071 0.929 19 C -0.218 4.218 20 N -0.522 5.522 21 Si 0.941 3.059 22 H -0.209 1.209 23 H -0.201 1.201 24 H -0.193 1.193 25 C 0.060 3.940 26 C -0.109 4.109 27 N -0.138 5.138 28 C 0.028 3.972 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.157 0.843 46 H 0.142 0.858 47 H 0.087 0.913 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.309 20.106 -2.541 20.397 hybrid contribution -0.358 0.779 0.633 1.066 sum 1.952 20.885 -1.909 21.063 Atomic orbital electron populations 1.22469 0.94504 1.03166 1.03612 1.22422 0.94270 0.92999 0.81403 1.21858 1.02626 0.89906 1.04411 1.22464 1.01782 1.01808 0.97676 1.86282 1.71354 1.22250 1.47213 1.18150 0.78747 0.81243 0.81701 1.90968 1.42304 1.70948 1.43967 1.46968 1.53264 1.10840 1.22049 1.22060 0.90963 0.97403 0.90991 1.21924 0.96997 0.93008 1.03987 1.21378 0.99402 0.96981 0.95857 1.21731 0.98300 0.90773 1.02694 0.88108 1.21065 0.79773 0.87843 0.84728 1.90528 1.52518 1.82220 1.21954 1.43604 1.59677 1.10392 1.04827 1.20221 1.11093 0.82982 1.40240 0.92911 1.27590 0.94477 1.06194 0.93577 1.70842 1.09953 1.27697 1.43714 0.82797 0.74545 0.70557 0.77978 1.20858 1.20088 1.19274 1.19454 0.88666 1.02773 0.83135 1.30302 0.95312 0.92107 0.93212 1.81098 1.10953 1.10819 1.10944 1.21162 0.95268 0.78833 1.01921 0.91674 0.89148 0.92946 0.90775 0.88113 0.90840 0.93016 0.89221 0.91584 0.90008 0.87120 0.86870 0.90746 0.91525 0.91112 0.91681 0.84295 0.85804 0.91327 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 8.37 71.98 0.60 -3.29 16 2 C 0.13 2.56 1.13 -10.79 -0.01 2.55 16 3 C -0.13 -1.59 8.85 71.98 0.64 -0.96 16 4 C -0.18 -3.94 8.37 71.98 0.60 -3.34 16 5 O -0.36 -8.73 8.53 -55.49 -0.47 -9.20 16 6 C 0.65 19.82 7.74 129.79 1.00 20.82 16 7 O -0.59 -22.35 11.29 19.80 0.22 -22.13 16 8 N -0.59 -16.54 2.97 -949.14 -2.82 -19.36 16 9 C 0.11 2.06 6.45 86.36 0.56 2.62 16 10 C -0.12 -2.16 6.08 30.67 0.19 -1.98 16 11 C -0.10 -2.62 4.81 30.62 0.15 -2.47 16 12 C -0.11 -3.73 2.24 -11.45 -0.03 -3.76 16 13 H 0.10 3.03 5.63 -2.39 -0.01 3.01 16 14 C 0.48 21.36 6.61 87.66 0.58 21.94 16 15 O -0.59 -31.04 16.28 -3.07 -0.05 -31.09 16 16 N -0.46 -21.77 2.16 -645.40 -1.39 -23.16 16 17 C -0.42 -22.44 8.75 84.04 0.73 -21.71 16 18 H 0.05 3.11 7.89 -2.91 -0.02 3.08 16 19 C -0.01 -0.73 5.00 84.93 0.42 -0.30 16 20 N -0.89 -45.44 12.49 21.66 0.27 -45.17 16 21 Si 1.12 46.69 29.95 68.60 2.05 48.74 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 25 C 0.19 7.27 4.64 84.57 0.39 7.66 16 26 C 0.21 8.72 14.74 89.44 1.32 10.04 16 27 N -0.46 -20.62 18.54 20.01 0.37 -20.25 16 28 C 0.15 5.15 5.70 86.38 0.49 5.65 16 29 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.55 5.88 -2.39 -0.01 1.54 16 32 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 1.56 5.88 -2.39 -0.01 1.55 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.11 1.76 6.93 -2.39 -0.02 1.74 16 40 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.94 7.90 -2.39 -0.02 1.92 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.27 13.55 6.79 -92.70 -0.63 12.92 16 45 H 0.14 4.27 5.86 -2.38 -0.01 4.25 16 46 H 0.12 5.10 5.77 -2.39 -0.01 5.09 16 47 H 0.07 2.76 5.96 -2.38 -0.01 2.75 16 48 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -72.17 385.19 6.94 -65.22 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 1.12 Total: 22.92 kcal Atomic # 6 Polarization: 25.83 SS G_CDS: 7.64 Total: 33.47 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -3.57 Total: -107.94 kcal Atomic # 8 Polarization: -62.12 SS G_CDS: -0.30 Total: -62.42 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.05 Total: 48.74 kcal Total: -72.17 6.94 -65.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290181421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.421 kcal (2) G-P(sol) polarization free energy of solvation -72.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds