Wall clock time and date at job start Tue Mar 31 2020 20:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46728 * 2 1 4 4 H 1.08998 * 109.46991 * 305.00072 * 3 2 1 5 5 C 1.53003 * 109.47014 * 184.99938 * 3 2 1 6 6 O 1.42900 * 109.46819 * 305.74735 * 5 3 2 7 7 N 1.46499 * 109.47202 * 64.99818 * 3 2 1 8 8 C 1.46505 * 120.00028 * 53.67292 * 7 3 2 9 9 C 1.34778 * 120.00067 * 233.67033 * 7 3 2 10 10 O 1.21585 * 119.99719 * 0.02562 * 9 7 3 11 11 N 1.34772 * 120.00006 * 179.97438 * 9 7 3 12 12 C 1.39582 * 119.99983 * 180.02562 * 11 9 7 13 13 N 1.32270 * 119.72651 * 359.97438 * 12 11 9 14 14 C 1.31970 * 121.68658 * 180.02562 * 13 12 11 15 15 C 1.38068 * 120.95720 * 359.97438 * 14 13 12 16 16 C 1.38791 * 119.35404 * 0.02562 * 15 14 13 17 17 C 1.38789 * 118.44811 * 0.02562 * 16 15 14 18 18 O 1.35983 * 120.49275 * 179.97438 * 17 16 15 19 19 C 1.42895 * 117.00162 * 359.97438 * 18 17 16 20 20 C 1.53005 * 109.46848 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47164 * 180.02562 * 20 19 18 22 22 H 1.08007 * 119.99903 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00121 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00008 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99902 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47673 * 59.99357 * 25 23 21 27 27 H 1.48500 * 109.47139 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47038 * 299.99312 * 25 23 21 29 29 H 1.08995 * 109.47513 * 299.99776 * 1 2 3 30 30 H 1.08999 * 109.47390 * 60.00815 * 1 2 3 31 31 H 1.09009 * 109.46870 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47513 * 240.00224 * 2 1 3 33 33 H 1.09000 * 109.46929 * 119.99439 * 2 1 3 34 34 H 1.08993 * 109.47112 * 65.74744 * 5 3 2 35 35 H 1.09001 * 109.46878 * 185.74611 * 5 3 2 36 36 H 0.96706 * 113.99540 * 179.97438 * 6 5 3 37 37 H 1.09004 * 109.47010 * 264.67313 * 8 7 3 38 38 H 1.09000 * 109.46938 * 24.66852 * 8 7 3 39 39 H 1.08996 * 109.46830 * 144.66898 * 8 7 3 40 40 H 0.97006 * 120.00445 * 0.02562 * 11 9 7 41 41 H 1.08006 * 119.52208 * 180.02562 * 14 13 12 42 42 H 1.08002 * 120.32164 * 180.02562 * 15 14 13 43 43 H 1.07996 * 120.77625 * 179.72550 * 16 15 14 44 44 H 1.08993 * 109.47677 * 299.99958 * 19 18 17 45 45 H 1.09000 * 109.47195 * 60.00302 * 19 18 17 46 46 H 1.09003 * 109.47437 * 300.00088 * 20 19 18 47 47 H 1.09000 * 109.46968 * 60.00173 * 20 19 18 48 48 H 0.96994 * 119.99517 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5648 1.4445 -0.1257 6 8 4.1284 0.6265 0.9016 7 7 1.6523 2.0976 1.2518 8 6 1.9959 1.4835 2.5368 9 6 0.9796 3.2651 1.2213 10 8 0.6941 3.7744 0.1548 11 7 0.6225 3.8674 2.3728 12 6 -0.0746 5.0762 2.3412 13 7 -0.3815 5.6261 1.1781 14 6 -1.0390 6.7679 1.1031 15 6 -1.4346 7.4360 2.2448 16 6 -1.1341 6.8961 3.4876 17 6 -0.4408 5.6948 3.5364 18 8 -0.1242 5.1289 4.7317 19 6 -0.5362 5.8261 5.9090 20 6 -0.0950 5.0422 7.1467 21 6 -0.5300 5.7772 8.3883 22 1 -1.0671 6.7103 8.3032 23 6 -0.2415 5.2589 9.6329 24 7 0.4130 4.1229 9.7366 25 14 -0.7814 6.1696 11.1720 26 1 -2.2601 6.3053 11.1738 27 1 -0.3531 5.4088 12.3732 28 1 -0.1605 7.5184 11.1924 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8494 1.0502 -1.1012 35 1 3.9365 2.4640 -0.0234 36 1 5.0942 0.5811 0.8826 37 1 1.1525 0.8926 2.8941 38 1 2.8645 0.8373 2.4099 39 1 2.2263 2.2637 3.2622 40 1 0.8500 3.4608 3.2237 41 1 -1.2718 7.1854 0.1346 42 1 -1.9725 8.3696 2.1715 43 1 -1.4285 7.4015 4.3955 44 1 -0.0799 6.8159 5.9236 45 1 -1.6216 5.9264 5.9108 46 1 -0.5517 4.0526 7.1319 47 1 0.9903 4.9416 7.1451 48 1 0.6156 3.7581 10.6122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296990807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:20 Heat of formation + Delta-G solvation = -68.129700 kcal Electronic energy + Delta-G solvation = -29662.683266 eV Core-core repulsion = 25525.963728 eV Total energy + Delta-G solvation = -4136.719538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97863 -39.88381 -38.01073 -37.56296 -35.55223 -34.78652 -33.46642 -32.93656 -31.50087 -30.49184 -29.36787 -28.72371 -26.61176 -25.39078 -24.07069 -23.44582 -22.77369 -21.49940 -20.67765 -19.46546 -18.86040 -17.93946 -17.47464 -17.21235 -16.23906 -16.15608 -16.02214 -15.77130 -15.56254 -14.74217 -14.58844 -14.56908 -14.53642 -14.07403 -13.86987 -13.53654 -13.47307 -12.92908 -12.84676 -12.79811 -12.53013 -12.38876 -12.05270 -11.93405 -11.89497 -11.38756 -11.24585 -11.06272 -11.03327 -10.96845 -10.67827 -10.64407 -10.32395 -10.13354 -10.02230 -9.76465 -9.41348 -9.16385 -8.99992 -8.63651 -8.50979 -7.57511 -6.16928 -4.21875 1.31947 1.51011 2.46197 3.24418 3.24472 3.29151 3.30249 3.57327 3.71683 3.97444 4.11662 4.34699 4.50638 4.71139 4.78576 4.96684 5.00302 5.08134 5.09190 5.19462 5.19820 5.23917 5.32120 5.37328 5.52005 5.53559 5.54218 5.72433 5.80736 5.88423 5.92468 5.93196 6.06207 6.08834 6.18122 6.22938 6.42587 6.44106 6.56853 6.69892 6.89441 7.31351 7.37495 7.54086 7.65347 7.72808 7.89179 8.15533 8.28777 8.68612 8.83068 9.42931 10.94455 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.002820 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.397560 B = 9928.420894 C =11846.699175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.160 3.840 4 H 0.113 0.887 5 C 0.065 3.935 6 O -0.566 6.566 7 N -0.619 5.619 8 C 0.065 3.935 9 C 0.698 3.302 10 O -0.540 6.540 11 N -0.660 5.660 12 C 0.347 3.653 13 N -0.441 5.441 14 C 0.076 3.924 15 C -0.164 4.164 16 C -0.146 4.146 17 C 0.064 3.936 18 O -0.317 6.317 19 C 0.066 3.934 20 C 0.027 3.973 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.889 5.889 25 Si 0.899 3.101 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.376 0.624 37 H 0.052 0.948 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.420 0.580 41 H 0.156 0.844 42 H 0.133 0.867 43 H 0.144 0.856 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.023 -4.700 -19.632 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.056 3.944 4 H 0.130 0.870 5 C -0.013 4.013 6 O -0.372 6.372 7 N -0.357 5.357 8 C -0.077 4.077 9 C 0.399 3.601 10 O -0.412 6.412 11 N -0.311 5.311 12 C 0.113 3.887 13 N -0.156 5.156 14 C -0.080 4.080 15 C -0.186 4.186 16 C -0.173 4.173 17 C 0.012 3.988 18 O -0.230 6.230 19 C -0.008 4.008 20 C -0.010 4.010 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.527 5.527 25 Si 0.726 3.274 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.224 0.776 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.259 0.741 41 H 0.173 0.827 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.654 -5.221 -20.848 21.800 hybrid contribution 0.062 1.030 2.182 2.413 sum 3.717 -4.192 -18.666 19.489 Atomic orbital electron populations 1.21732 0.95475 1.01268 1.02255 1.21778 0.96253 0.95434 1.03039 1.21128 0.91974 0.93924 0.87374 0.86955 1.22664 0.94024 0.94240 0.90412 1.86444 1.25360 1.71485 1.53893 1.47016 1.59327 1.22072 1.07320 1.22019 1.02435 0.99215 0.84061 1.15927 0.79230 0.80782 0.84154 1.90991 1.58067 1.64350 1.27799 1.42666 1.57319 1.21454 1.09642 1.17532 0.96107 0.87818 0.87240 1.67646 1.12979 1.11291 1.23715 1.22410 0.96232 0.90824 0.98581 1.21869 1.02575 1.01670 0.92452 1.21579 1.00640 0.95319 0.99761 1.19548 0.98790 0.94007 0.86477 1.86096 1.75133 1.49760 1.11981 1.23379 0.98580 0.96431 0.82373 1.19116 0.97923 0.95973 0.87975 1.20914 1.37690 1.07830 0.90262 0.92402 1.24974 0.94867 0.94988 0.99237 1.69953 1.39411 1.18794 1.24507 0.86546 0.79120 0.79734 0.81978 1.20074 1.21086 1.20075 0.92691 0.92758 0.92841 0.91130 0.90589 0.92639 0.93175 0.77631 0.92963 0.87668 0.91964 0.74052 0.82719 0.84877 0.83792 0.92988 0.92977 0.95372 0.95390 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.80 37.16 0.36 -1.13 16 2 C -0.13 -1.14 4.99 -26.73 -0.13 -1.27 16 3 C 0.16 1.66 2.54 -67.93 -0.17 1.49 16 4 H 0.11 1.32 6.92 -51.93 -0.36 0.96 16 5 C 0.07 0.53 6.84 37.16 0.25 0.79 16 6 O -0.57 -4.20 10.02 -35.23 -0.35 -4.56 16 7 N -0.62 -7.63 2.22 -179.66 -0.40 -8.02 16 8 C 0.07 0.70 8.82 59.85 0.53 1.23 16 9 C 0.70 11.06 8.25 -86.92 -0.72 10.34 16 10 O -0.54 -10.07 13.93 5.29 0.07 -9.99 16 11 N -0.66 -10.60 5.26 -15.67 -0.08 -10.68 16 12 C 0.35 6.07 7.45 -154.43 -1.15 4.92 16 13 N -0.44 -7.72 7.87 -12.22 -0.10 -7.82 16 14 C 0.08 1.08 11.17 -17.55 -0.20 0.88 16 15 C -0.16 -2.12 10.10 -39.44 -0.40 -2.52 16 16 C -0.15 -2.20 9.14 -39.17 -0.36 -2.56 16 17 C 0.06 1.10 6.72 -38.92 -0.26 0.84 16 18 O -0.32 -6.00 9.39 -19.69 -0.18 -6.19 16 19 C 0.07 1.33 4.70 37.16 0.17 1.50 16 20 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 21 C -0.53 -14.19 9.11 -34.44 -0.31 -14.50 16 22 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 23 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 24 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 25 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.05 0.65 7.75 -51.93 -0.40 0.24 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.71 6.74 -51.93 -0.35 0.36 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 1.35 9.12 45.56 0.42 1.76 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.11 1.04 4.97 -51.93 -0.26 0.79 16 39 H 0.06 0.68 6.66 -51.93 -0.35 0.34 16 40 H 0.42 6.25 5.89 -40.82 -0.24 6.01 16 41 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.14 2.00 6.44 -52.49 -0.34 1.66 16 44 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 45 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -33.28 390.45 -8.51 -41.80 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.45 Total: 6.57 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.63 Total: 2.15 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.16 Total: -51.36 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.46 Total: -20.74 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.28 -8.51 -41.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296990807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.335 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds