Wall clock time and date at job start Tue Mar 31 2020 20:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47386 * 2 1 4 4 H 1.09001 * 109.47187 * 304.99790 * 3 2 1 5 5 N 1.46497 * 109.47333 * 65.00394 * 3 2 1 6 6 C 1.34780 * 120.00031 * 205.00286 * 5 3 2 7 7 O 1.21273 * 119.99822 * 359.97438 * 6 5 3 8 8 C 1.50695 * 119.99639 * 179.97438 * 6 5 3 9 9 C 1.52999 * 109.46918 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47451 * 180.02562 * 9 8 6 11 11 C 1.39866 * 126.04287 * 89.96846 * 10 9 8 12 12 C 1.50705 * 125.89802 * 0.03191 * 11 10 9 13 13 N 1.30837 * 108.20458 * 180.02562 * 11 10 9 14 14 N 1.40086 * 108.20700 * 0.02562 * 13 11 10 15 15 C 1.46491 * 126.04129 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.46957 * 90.02579 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.34955 * 107.92007 * 0.26426 * 14 13 11 25 25 C 1.50708 * 126.12162 * 179.73553 * 24 14 13 26 26 C 1.50701 * 109.46890 * 185.00223 * 3 2 1 27 27 O 1.20828 * 119.99680 * 239.99914 * 26 3 2 28 28 O 1.34230 * 120.00109 * 60.00329 * 26 3 2 29 29 H 1.08992 * 109.47638 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46859 * 300.00232 * 1 2 3 31 31 H 1.09008 * 109.47261 * 59.99558 * 1 2 3 32 32 H 1.09007 * 109.46859 * 239.99768 * 2 1 3 33 33 H 1.09003 * 109.47043 * 120.00011 * 2 1 3 34 34 H 0.97005 * 119.99776 * 24.98944 * 5 3 2 35 35 H 1.08997 * 109.47366 * 60.00063 * 8 6 5 36 36 H 1.09000 * 109.47755 * 299.99776 * 8 6 5 37 37 H 1.09001 * 109.47356 * 60.00206 * 9 8 6 38 38 H 1.09002 * 109.47319 * 299.99905 * 9 8 6 39 39 H 1.08999 * 109.46544 * 269.99193 * 12 11 10 40 40 H 1.09000 * 109.47294 * 29.99156 * 12 11 10 41 41 H 1.08993 * 109.46794 * 149.99571 * 12 11 10 42 42 H 1.09004 * 109.47166 * 330.02845 * 15 14 13 43 43 H 1.08994 * 109.47507 * 210.02551 * 15 14 13 44 44 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.47042 * 90.02700 * 25 24 14 46 46 H 1.09007 * 109.46511 * 210.02061 * 25 24 14 47 47 H 1.08991 * 109.47237 * 330.02091 * 25 24 14 48 48 H 0.96700 * 116.99926 * 179.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6526 2.0975 1.2518 6 6 1.5258 3.4384 1.2996 7 8 1.7329 4.1028 0.3064 8 6 1.1267 4.1121 2.5871 9 6 1.0561 5.6250 2.3706 10 6 0.6576 6.2988 3.6583 11 6 1.5295 6.7585 4.6507 12 6 3.0334 6.6663 4.6175 13 7 0.8140 7.2824 5.6127 14 7 -0.5379 7.1720 5.2626 15 6 -1.6756 7.6337 6.0617 16 6 -2.0032 9.0578 5.6933 17 1 -1.4223 9.5678 4.9391 18 6 -3.0486 9.7076 6.3147 19 7 -3.3379 10.9485 5.9894 20 14 -4.0537 8.8252 7.6188 21 1 -3.4440 9.0550 8.9533 22 1 -5.4429 9.3502 7.6123 23 1 -4.0734 7.3692 7.3276 24 6 -0.6073 6.5595 4.0621 25 6 -1.8677 6.2291 3.3048 26 6 3.5419 1.4441 -0.1239 27 8 4.2191 1.9415 0.7444 28 8 4.1273 0.8932 -1.1989 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4871 1.5660 2.0463 35 1 1.8650 3.8898 3.3576 36 1 0.1504 3.7439 2.9025 37 1 0.3180 5.8477 1.6000 38 1 2.0326 5.9929 2.0555 39 1 3.3499 5.7285 5.0741 40 1 3.3769 6.7013 3.5837 41 1 3.4608 7.5023 5.1710 42 1 -1.4211 7.5816 7.1203 43 1 -2.5396 6.9994 5.8641 44 1 -4.0731 11.4057 6.4268 45 1 -2.1293 7.0630 2.6533 46 1 -1.7061 5.3347 2.7031 47 1 -2.6792 6.0508 4.0102 48 1 5.0933 0.9187 -1.2340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818282721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:01 Heat of formation + Delta-G solvation = -77.099221 kcal Electronic energy + Delta-G solvation = -29100.347855 eV Core-core repulsion = 24963.239370 eV Total energy + Delta-G solvation = -4137.108486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.03660 -40.65616 -39.50740 -36.62075 -36.19352 -34.45781 -33.42350 -32.68304 -32.48978 -30.49141 -29.29207 -28.39478 -26.69520 -26.08939 -23.90464 -23.14600 -22.02934 -21.34546 -20.62582 -18.86978 -18.67941 -18.50376 -17.44087 -17.19347 -17.12355 -16.40349 -15.88179 -15.62482 -15.28102 -14.73466 -14.48652 -14.24301 -14.06159 -13.83707 -13.62889 -13.23582 -13.07146 -12.90398 -12.73263 -12.60526 -12.50930 -12.33077 -12.17881 -12.01353 -11.96746 -11.92158 -11.69812 -11.55841 -11.49509 -11.33597 -11.01328 -10.98937 -10.74376 -10.72749 -10.23565 -10.04124 -9.68876 -9.65919 -9.58303 -8.79286 -8.23479 -7.51563 -6.27078 -4.30161 1.83220 2.20651 2.63002 2.71243 3.01548 3.13849 3.19300 3.21198 3.35387 3.49083 4.07851 4.20080 4.39727 4.56876 4.68095 4.89936 5.00262 5.04654 5.12086 5.16881 5.22454 5.27928 5.36041 5.40336 5.46094 5.58712 5.71158 5.72708 5.79964 5.93062 5.93445 5.95224 5.96121 6.02042 6.11898 6.22859 6.30285 6.35814 6.45333 6.49409 6.79826 6.93824 7.13659 7.28071 7.42896 7.50941 7.85621 7.99967 8.30759 8.59759 8.78588 9.27990 10.85499 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019781 B = 0.002261 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.171464 B =12379.372866 C =13156.916884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.157 3.843 4 H 0.128 0.872 5 N -0.717 5.717 6 C 0.522 3.478 7 O -0.533 6.533 8 C -0.131 4.131 9 C -0.012 4.012 10 C -0.265 4.265 11 C 0.056 3.944 12 C -0.066 4.066 13 N -0.294 5.294 14 N -0.325 5.325 15 C 0.230 3.770 16 C -0.540 4.540 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.886 5.886 20 Si 0.874 3.126 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.265 1.265 24 C 0.097 3.903 25 C -0.087 4.087 26 C 0.463 3.537 27 O -0.502 6.502 28 O -0.517 6.517 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.407 0.593 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.269 0.731 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.836 -25.695 -12.345 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.049 3.951 4 H 0.145 0.855 5 N -0.371 5.371 6 C 0.311 3.689 7 O -0.409 6.409 8 C -0.171 4.171 9 C -0.051 4.051 10 C -0.277 4.277 11 C -0.109 4.109 12 C -0.124 4.124 13 N -0.118 5.118 14 N -0.104 5.104 15 C 0.111 3.889 16 C -0.578 4.578 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.523 5.523 20 Si 0.701 3.299 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.190 1.190 24 C -0.034 4.034 25 C -0.145 4.145 26 C 0.303 3.697 27 O -0.389 6.389 28 O -0.328 6.328 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.243 0.757 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 8.498 -24.246 -11.501 28.149 hybrid contribution 0.009 -0.759 0.422 0.868 sum 8.507 -25.005 -11.079 28.642 Atomic orbital electron populations 1.21782 0.93744 1.02515 1.02963 1.21785 0.97798 0.92406 1.04326 1.20448 0.86744 0.96758 0.91106 0.85457 1.45881 1.70979 1.07789 1.12489 1.21147 0.75273 0.81228 0.91295 1.90704 1.49330 1.63789 1.37039 1.21745 1.03532 0.97751 0.94120 1.19410 1.02214 0.90010 0.93433 1.19338 0.91250 1.16530 1.00584 1.21978 0.96270 0.99501 0.93161 1.20048 0.87966 1.02081 1.02346 1.77285 0.87200 1.23585 1.23729 1.48779 1.05314 1.41782 1.14532 1.19967 0.80735 0.96832 0.91371 1.21162 1.16700 0.95161 1.24795 0.90157 1.24820 0.96565 0.94761 0.96435 1.69874 1.29523 1.10822 1.42075 0.86884 0.80126 0.80276 0.82660 1.19621 1.20538 1.18968 1.20765 0.96425 0.97630 0.88615 1.20372 0.92884 1.01997 0.99262 1.24184 0.92817 0.73962 0.78743 1.90743 1.65545 1.41698 1.40869 1.84507 1.28901 1.74385 1.45052 0.91763 0.91981 0.91962 0.88928 0.90705 0.75716 0.88644 0.88830 0.91213 0.91109 0.91491 0.91098 0.91456 0.93746 0.93522 0.92115 0.90096 0.90924 0.91186 0.73083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.80 37.16 0.36 -0.24 16 2 C -0.13 -0.53 5.44 -26.73 -0.15 -0.68 16 3 C 0.16 1.16 2.48 -69.08 -0.17 0.99 16 4 H 0.13 1.04 7.58 -51.93 -0.39 0.64 16 5 N -0.72 -5.82 4.06 -54.94 -0.22 -6.04 16 6 C 0.52 5.99 7.66 -10.99 -0.08 5.91 16 7 O -0.53 -8.11 15.64 5.56 0.09 -8.02 16 8 C -0.13 -1.45 5.68 -27.89 -0.16 -1.61 16 9 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 10 C -0.27 -4.68 5.35 -105.05 -0.56 -5.24 16 11 C 0.06 1.06 7.22 -82.40 -0.59 0.46 16 12 C -0.07 -0.96 10.26 36.01 0.37 -0.59 16 13 N -0.29 -6.70 12.58 33.67 0.42 -6.28 16 14 N -0.32 -7.41 3.60 -58.31 -0.21 -7.61 16 15 C 0.23 5.53 5.07 -5.20 -0.03 5.50 16 16 C -0.54 -15.20 9.94 -34.44 -0.34 -15.55 16 17 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 20 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 24 C 0.10 1.87 6.93 -82.26 -0.57 1.30 16 25 C -0.09 -1.36 9.72 36.01 0.35 -1.01 16 26 C 0.46 4.28 7.66 36.01 0.28 4.56 16 27 O -0.50 -6.48 17.08 -18.75 -0.32 -6.80 16 28 O -0.52 -3.32 13.23 -39.26 -0.52 -3.84 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.26 7.75 -51.92 -0.40 -0.14 16 31 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.09 0.33 8.00 -51.92 -0.42 -0.08 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.41 2.26 8.60 -40.82 -0.35 1.91 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.02 7.75 -51.93 -0.40 0.61 16 38 H 0.07 1.06 7.21 -51.93 -0.37 0.68 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.93 7.25 -51.93 -0.38 0.56 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.04 1.07 7.58 -51.93 -0.39 0.68 16 43 H 0.05 1.04 6.09 -51.93 -0.32 0.72 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 47 H 0.07 1.08 7.07 -51.93 -0.37 0.71 16 48 H 0.41 1.14 9.10 45.56 0.41 1.55 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -37.38 404.74 -6.83 -44.21 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.76 Total: 2.82 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.52 Total: -4.39 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.76 Total: -45.60 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.75 Total: -18.66 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.38 -6.83 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818282721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.888 kcal (2) G-P(sol) polarization free energy of solvation -37.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds