Wall clock time and date at job start Tue Mar 31 2020 19:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46876 * 2 1 4 4 C 1.53000 * 109.47138 * 174.72552 * 3 2 1 5 5 C 1.52992 * 109.47192 * 294.07281 * 4 3 2 6 6 N 1.46498 * 109.47152 * 294.72962 * 3 2 1 7 7 N 1.28444 * 125.19492 * 305.55259 * 6 3 2 8 8 C 1.30881 * 110.95119 * 180.15312 * 7 6 3 9 9 C 1.39648 * 107.87842 * 359.54927 * 8 7 6 10 10 C 1.36651 * 125.19635 * 125.20454 * 6 3 2 11 11 C 1.47026 * 126.89161 * 0.02562 * 10 6 3 12 12 O 1.21667 * 120.00214 * 353.12925 * 11 10 6 13 13 N 1.34778 * 119.99424 * 173.13372 * 11 10 6 14 14 C 1.36837 * 120.00427 * 3.23342 * 13 11 10 15 15 H 1.07994 * 119.99982 * 306.21065 * 14 13 11 16 16 C 1.39049 * 119.99980 * 126.20960 * 14 13 11 17 17 N 1.31370 * 120.00056 * 4.00195 * 16 14 13 18 18 Si 1.86801 * 120.00115 * 184.00123 * 16 14 13 19 19 H 1.48498 * 109.47132 * 94.99715 * 18 16 14 20 20 H 1.48501 * 109.47176 * 214.99745 * 18 16 14 21 21 H 1.48499 * 109.46980 * 334.99786 * 18 16 14 22 22 C 1.46503 * 119.99341 * 183.23793 * 13 11 10 23 23 C 1.53000 * 109.47173 * 84.70658 * 22 13 11 24 24 C 1.50706 * 109.46896 * 179.97438 * 23 22 13 25 25 O 1.20820 * 120.00207 * 359.97438 * 24 23 22 26 26 O 1.34224 * 119.99703 * 179.97438 * 24 23 22 27 27 C 1.45202 * 116.99878 * 179.97438 * 26 24 23 28 28 H 1.08995 * 109.47277 * 65.04616 * 1 2 3 29 29 H 1.09003 * 109.46757 * 185.04090 * 1 2 3 30 30 H 1.08991 * 109.47380 * 305.03916 * 1 2 3 31 31 H 1.09005 * 109.47053 * 240.00324 * 2 1 3 32 32 H 1.08999 * 109.47291 * 120.00188 * 2 1 3 33 33 H 1.09000 * 109.47223 * 54.72879 * 3 2 1 34 34 H 1.09007 * 109.46616 * 54.07278 * 4 3 2 35 35 H 1.09001 * 109.47290 * 174.06708 * 4 3 2 36 36 H 1.09001 * 109.47579 * 305.35545 * 5 4 3 37 37 H 1.08995 * 109.47329 * 65.35784 * 5 4 3 38 38 H 1.09000 * 109.47283 * 185.35618 * 5 4 3 39 39 H 1.07995 * 126.06298 * 179.81300 * 8 7 6 40 40 H 1.07994 * 127.32531 * 180.28136 * 9 8 7 41 41 H 0.97000 * 119.99925 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46931 * 204.70251 * 22 13 11 43 43 H 1.08997 * 109.47576 * 324.70084 * 22 13 11 44 44 H 1.08994 * 109.47207 * 299.99465 * 23 22 13 45 45 H 1.08995 * 109.47120 * 60.00022 * 23 22 13 46 46 H 1.09001 * 109.46964 * 60.00104 * 27 26 24 47 47 H 1.09001 * 109.47296 * 179.97438 * 27 26 24 48 48 H 1.08996 * 109.47504 * 300.00141 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5642 1.4446 0.1326 5 6 3.9574 0.8976 1.5062 6 7 1.6580 2.0955 -1.2545 7 7 1.9242 1.6528 -2.4305 8 6 1.4553 2.4570 -3.3505 9 6 0.8154 3.5182 -2.7067 10 6 0.9581 3.2651 -1.3524 11 6 0.4571 4.0893 -0.2428 12 8 0.5438 3.6862 0.9019 13 7 -0.0985 5.2913 -0.4937 14 6 -0.2565 5.7160 -1.7849 15 1 0.5903 5.7337 -2.4549 16 6 -1.5073 6.1246 -2.2343 17 7 -2.5201 6.1779 -1.3993 18 14 -1.7476 6.5978 -4.0253 19 1 -2.2508 5.4247 -4.7840 20 1 -2.7320 7.7059 -4.1168 21 1 -0.4509 7.0391 -4.5989 22 6 -0.5331 6.1433 0.6160 23 6 0.6561 6.9570 1.1304 24 6 0.2088 7.8338 2.2716 25 8 -0.9430 7.8107 2.6357 26 8 1.0900 8.6405 2.8834 27 6 0.5889 9.4574 3.9743 28 1 -0.3633 0.4335 -0.9317 29 1 -0.3633 -1.0237 0.0903 30 1 -0.3633 0.5900 0.8413 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6016 1.9829 0.8390 34 1 3.9975 0.8168 -0.6461 35 1 3.9368 2.4635 0.0270 36 1 3.4478 1.4669 2.2836 37 1 3.6689 -0.1512 1.5758 38 1 5.0357 0.9872 1.6380 39 1 1.5436 2.3215 -4.4183 40 1 0.3155 4.3575 -3.1669 41 1 -3.3927 6.4626 -1.7128 42 1 -1.3141 6.8204 0.2699 43 1 -0.9228 5.5206 1.4212 44 1 1.4370 6.2800 1.4765 45 1 1.0457 7.5798 0.3252 46 1 0.1894 8.8127 4.7571 47 1 1.4015 10.0601 4.3799 48 1 -0.2003 10.1123 3.6050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:18 Heat of formation + Delta-G solvation = -43.623293 kcal Electronic energy + Delta-G solvation = -30869.021572 eV Core-core repulsion = 26733.364711 eV Total energy + Delta-G solvation = -4135.656861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78365 -40.08642 -38.42773 -36.60704 -36.20454 -35.02288 -32.19803 -31.69662 -31.20671 -30.63037 -29.49973 -27.48372 -26.06018 -25.24937 -24.01946 -22.67982 -21.65743 -21.49837 -20.39529 -19.57515 -18.96194 -17.78580 -17.21212 -16.28609 -16.22229 -15.80584 -15.55164 -15.28290 -14.62690 -14.57310 -14.46984 -13.92765 -13.85752 -13.73194 -13.54704 -13.18073 -12.95027 -12.68644 -12.58044 -12.25179 -12.14403 -12.04125 -11.91632 -11.76226 -11.69946 -11.33126 -11.27652 -11.16151 -10.84080 -10.75901 -10.66054 -10.57718 -10.45852 -10.41811 -10.15869 -10.07436 -9.94666 -9.00227 -8.73105 -8.39630 -8.07520 -7.52911 -6.47205 -4.38061 2.23843 2.62868 2.97756 3.08746 3.14593 3.16982 3.18743 3.42473 3.98135 4.32822 4.58560 4.74360 4.84800 5.00956 5.20835 5.24818 5.27900 5.28001 5.30293 5.39006 5.51146 5.59533 5.61081 5.73534 5.78980 5.83228 5.85649 5.92269 5.97416 6.02091 6.13242 6.15294 6.20977 6.23525 6.30506 6.46352 6.51276 6.60359 6.69475 6.80426 6.88278 7.21827 7.37265 7.43950 7.57253 7.86495 8.14257 8.20249 8.83024 8.91171 9.25627 9.70445 10.54530 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008435 B = 0.004922 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3318.678551 B = 5687.712181 C = 8090.941537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.137 3.863 4 C -0.128 4.128 5 C -0.148 4.148 6 N -0.263 5.263 7 N -0.297 5.297 8 C -0.032 4.032 9 C -0.181 4.181 10 C -0.006 4.006 11 C 0.549 3.451 12 O -0.602 6.602 13 N -0.418 5.418 14 C -0.356 4.356 15 H 0.100 0.900 16 C 0.055 3.945 17 N -0.855 5.855 18 Si 0.910 3.090 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.135 3.865 23 C -0.126 4.126 24 C 0.467 3.533 25 O -0.504 6.504 26 O -0.367 6.367 27 C 0.035 3.965 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.138 0.862 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.274 0.726 42 H 0.115 0.885 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 -2.024 3.025 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.036 3.964 4 C -0.167 4.167 5 C -0.206 4.206 6 N -0.051 5.051 7 N -0.130 5.130 8 C -0.209 4.209 9 C -0.209 4.209 10 C -0.133 4.133 11 C 0.338 3.662 12 O -0.489 6.489 13 N -0.135 5.135 14 C -0.484 4.484 15 H 0.117 0.883 16 C -0.154 4.154 17 N -0.489 5.489 18 Si 0.735 3.265 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.187 1.187 22 C 0.012 3.988 23 C -0.165 4.165 24 C 0.310 3.690 25 O -0.391 6.391 26 O -0.284 6.284 27 C -0.059 4.059 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.155 0.845 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.189 0.811 40 H 0.201 0.799 41 H 0.084 0.916 42 H 0.133 0.867 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.123 0.877 46 H 0.078 0.922 47 H 0.114 0.886 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.195 -3.173 4.022 9.665 hybrid contribution -0.841 1.179 -1.017 1.770 sum 7.354 -1.994 3.006 8.191 Atomic orbital electron populations 1.21732 0.95194 1.01175 1.02722 1.21858 0.96845 0.94962 1.02856 1.22109 0.95813 0.94709 0.83747 1.21808 0.94223 1.02201 0.98419 1.21764 1.01263 1.01119 0.96464 1.45703 1.38474 1.15954 1.04994 1.72911 1.23292 1.26210 0.90550 1.23549 1.03698 0.94889 0.98730 1.23397 1.03867 1.02034 0.91641 1.21446 1.03994 0.91446 0.96410 1.17309 0.81595 0.81368 0.85911 1.90550 1.63379 1.72466 1.22548 1.42870 1.52533 1.11746 1.06327 1.19584 0.94946 1.46793 0.87079 0.88252 1.25663 0.95130 0.95282 0.99289 1.69764 1.01518 1.42624 1.34955 0.86179 0.79029 0.78728 0.82553 1.19611 1.20620 1.18737 1.21227 0.93896 0.94069 0.89645 1.21931 1.03063 0.97700 0.93824 1.24027 0.83998 0.78149 0.82872 1.90657 1.19790 1.64946 1.63688 1.86537 1.42944 1.52318 1.46594 1.23170 1.00573 0.94107 0.88041 0.92799 0.92898 0.92113 0.90913 0.90403 0.84468 0.91170 0.91602 0.92053 0.92362 0.92415 0.81072 0.79864 0.91552 0.86694 0.91621 0.88491 0.87702 0.92180 0.88625 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.74 37.16 0.36 -2.01 16 2 C -0.13 -1.84 5.32 -26.73 -0.14 -1.99 16 3 C 0.14 2.29 2.40 -67.93 -0.16 2.13 16 4 C -0.13 -1.82 5.65 -26.73 -0.15 -1.97 16 5 C -0.15 -1.68 9.56 37.15 0.36 -1.32 16 6 N -0.26 -5.09 2.65 -50.69 -0.13 -5.22 16 7 N -0.30 -5.59 11.42 30.58 0.35 -5.25 16 8 C -0.03 -0.58 12.03 -17.43 -0.21 -0.79 16 9 C -0.18 -3.69 9.22 -38.95 -0.36 -4.05 16 10 C -0.01 -0.13 6.86 -82.06 -0.56 -0.69 16 11 C 0.55 12.97 7.57 -12.70 -0.10 12.87 16 12 O -0.60 -14.66 14.05 5.22 0.07 -14.59 16 13 N -0.42 -9.88 2.46 -116.18 -0.29 -10.16 16 14 C -0.36 -8.29 6.41 -15.02 -0.10 -8.39 16 15 H 0.10 2.21 5.81 -52.49 -0.30 1.91 16 16 C 0.05 1.30 5.33 -17.45 -0.09 1.20 16 17 N -0.85 -21.74 11.40 55.50 0.63 -21.11 16 18 Si 0.91 18.13 29.14 -169.99 -4.95 13.18 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 C 0.14 3.10 4.15 -4.04 -0.02 3.08 16 23 C -0.13 -2.39 6.10 -27.88 -0.17 -2.56 16 24 C 0.47 8.64 7.96 36.01 0.29 8.93 16 25 O -0.50 -10.65 15.73 -18.75 -0.29 -10.94 16 26 O -0.37 -5.79 10.57 -39.24 -0.41 -6.20 16 27 C 0.04 0.42 10.56 101.05 1.07 1.49 16 28 H 0.05 0.98 7.90 -51.93 -0.41 0.57 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.07 7.95 -51.93 -0.41 0.65 16 32 H 0.08 0.93 6.49 -51.93 -0.34 0.59 16 33 H 0.14 2.61 5.33 -51.93 -0.28 2.33 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.58 6.74 -51.93 -0.35 0.23 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 40 H 0.18 3.75 4.45 -52.49 -0.23 3.52 16 41 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 42 H 0.12 2.87 5.96 -51.93 -0.31 2.56 16 43 H 0.07 1.62 7.50 -51.93 -0.39 1.23 16 44 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 45 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 46 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -28.86 391.63 -6.35 -35.21 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -7.23 Total: 13.25 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 0.01 Total: 5.93 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.56 Total: -41.73 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.64 Total: -31.73 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -4.95 Total: 13.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.86 -6.35 -35.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.416 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds