Wall clock time and date at job start Tue Mar 31 2020 20:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47172 * 2 1 4 4 H 1.09004 * 109.47107 * 305.00032 * 3 2 1 5 5 C 1.53006 * 109.47353 * 64.99666 * 3 2 1 6 6 N 1.46497 * 109.47219 * 185.00127 * 3 2 1 7 7 N 1.28474 * 124.87409 * 300.31291 * 6 3 2 8 8 C 1.31861 * 110.05653 * 180.18193 * 7 6 3 9 9 C 1.47607 * 126.52249 * 179.81999 * 8 7 6 10 10 O 1.21611 * 120.00292 * 185.17632 * 9 8 7 11 11 N 1.34776 * 119.99940 * 5.17505 * 9 8 7 12 12 C 1.36907 * 120.00333 * 355.53382 * 11 9 8 13 13 H 1.08010 * 119.99830 * 42.39065 * 12 11 9 14 14 C 1.39020 * 120.00646 * 222.12083 * 12 11 9 15 15 N 1.31384 * 119.99312 * 11.38232 * 14 12 11 16 16 Si 1.86793 * 120.00319 * 191.39053 * 14 12 11 17 17 H 1.48501 * 109.47194 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47405 * 119.99570 * 16 14 12 19 19 H 1.48508 * 109.47102 * 239.99640 * 16 14 12 20 20 C 1.46502 * 119.99852 * 175.53043 * 11 9 8 21 21 C 1.52995 * 109.47512 * 275.83396 * 20 11 9 22 22 C 1.50698 * 109.47327 * 180.02562 * 21 20 11 23 23 O 1.20827 * 119.99752 * 0.02562 * 22 21 20 24 24 O 1.34227 * 120.00148 * 179.97438 * 22 21 20 25 25 C 1.45198 * 117.00305 * 179.97438 * 24 22 21 26 26 C 1.41542 * 106.95707 * 359.55698 * 8 7 6 27 27 C 1.35041 * 124.88260 * 119.99759 * 6 3 2 28 28 C 1.50697 * 126.37884 * 359.97438 * 27 6 3 29 29 H 1.08999 * 109.46735 * 300.00245 * 1 2 3 30 30 H 1.09000 * 109.47046 * 60.00118 * 1 2 3 31 31 H 1.08993 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.46876 * 239.99923 * 2 1 3 33 33 H 1.09000 * 109.47046 * 119.99881 * 2 1 3 34 34 H 1.08989 * 109.47406 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47079 * 300.00766 * 5 3 2 36 36 H 1.09004 * 109.46716 * 60.00125 * 5 3 2 37 37 H 0.97004 * 119.99433 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47459 * 35.83826 * 20 11 9 39 39 H 1.09007 * 109.47210 * 155.83315 * 20 11 9 40 40 H 1.09007 * 109.47012 * 300.00115 * 21 20 11 41 41 H 1.09000 * 109.47237 * 60.00006 * 21 20 11 42 42 H 1.09005 * 109.47106 * 60.00124 * 25 24 22 43 43 H 1.09000 * 109.47567 * 179.97438 * 25 24 22 44 44 H 1.08999 * 109.47513 * 300.00727 * 25 24 22 45 45 H 1.07995 * 127.25517 * 180.26361 * 26 8 7 46 46 H 1.08992 * 109.47252 * 269.99993 * 28 27 6 47 47 H 1.09003 * 109.47039 * 30.00388 * 28 27 6 48 48 H 1.09004 * 109.47295 * 149.99427 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 7 3.5001 1.4443 -0.1204 7 7 4.3064 0.8869 0.7102 8 6 5.5533 1.0704 0.3224 9 6 6.7670 0.5877 1.0099 10 8 7.8662 0.9051 0.5976 11 7 6.6571 -0.2047 2.0945 12 6 5.4222 -0.4876 2.6133 13 1 4.5991 -0.7187 1.9532 14 6 5.2288 -0.4831 3.9900 15 7 6.1564 0.0054 4.7819 16 14 3.6504 -1.1715 4.7138 17 1 2.7736 -1.6567 3.6179 18 1 3.9740 -2.2985 5.6251 19 1 2.9485 -0.1061 5.4739 20 6 7.8592 -0.7635 2.7182 21 6 8.2672 -2.0424 1.9842 22 6 9.5034 -2.6175 2.6262 23 8 10.0062 -2.0617 3.5740 24 8 10.0453 -3.7477 2.1459 25 6 11.2356 -4.2436 2.8133 26 6 5.5061 1.8129 -0.8816 27 6 4.1916 2.0267 -1.1235 28 6 3.6084 2.7747 -2.2945 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.9990 3.1541 1.3076 35 1 0.5490 2.1252 1.3969 36 1 2.0699 1.5876 2.1492 37 1 6.0217 0.0083 5.7425 38 1 8.6698 -0.0371 2.6603 39 1 7.6524 -0.9946 3.7632 40 1 7.4566 -2.7689 2.0421 41 1 8.4741 -1.8114 0.9392 42 1 11.0066 -4.4500 3.8589 43 1 11.5696 -5.1602 2.3272 44 1 12.0240 -3.4931 2.7555 45 1 6.3427 2.1401 -1.4812 46 1 3.4249 2.0803 -3.1143 47 1 2.6694 3.2413 -1.9964 48 1 4.3089 3.5439 -2.6197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:32 Heat of formation + Delta-G solvation = -41.604404 kcal Electronic energy + Delta-G solvation = -30448.138866 eV Core-core repulsion = 26312.569551 eV Total energy + Delta-G solvation = -4135.569315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99266 -39.98498 -38.27152 -36.27711 -36.05804 -34.80414 -32.36266 -31.88462 -31.30450 -30.45493 -28.76755 -27.49710 -26.52965 -25.10517 -24.88982 -23.79891 -22.01842 -20.56521 -20.23043 -19.67411 -18.59283 -17.42444 -16.87782 -16.22526 -16.11790 -16.04007 -15.50099 -15.25849 -15.05322 -14.43640 -14.20432 -13.75852 -13.68245 -13.60566 -13.46197 -13.00862 -12.93413 -12.76534 -12.66459 -12.35523 -12.24529 -12.13097 -11.97215 -11.88369 -11.76514 -11.55104 -11.45743 -11.16586 -11.00847 -10.91910 -10.79963 -10.71252 -10.48912 -10.30392 -10.02418 -9.95591 -9.59056 -9.01203 -8.60181 -8.30017 -8.22805 -7.41075 -6.24031 -3.97970 2.51434 2.73192 2.83661 2.98985 3.11434 3.21177 3.25253 3.29062 4.16751 4.52431 4.60205 4.75546 4.82362 4.93282 5.04696 5.12422 5.19371 5.25940 5.28595 5.31570 5.35127 5.38337 5.47723 5.58955 5.62262 5.67377 5.70480 5.84276 5.89367 5.90640 5.93141 5.99962 6.03105 6.23839 6.28958 6.34716 6.35470 6.49349 6.56556 6.79014 6.94943 7.23040 7.43219 7.45147 7.73170 8.00259 8.24814 8.58285 8.79969 9.19584 9.56428 9.96709 10.78877 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.003906 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.615346 B = 7167.495523 C = 8524.927482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.153 3.847 4 H 0.098 0.902 5 C -0.165 4.165 6 N -0.295 5.295 7 N -0.216 5.216 8 C 0.017 3.983 9 C 0.548 3.452 10 O -0.598 6.598 11 N -0.424 5.424 12 C -0.316 4.316 13 H 0.112 0.888 14 C 0.040 3.960 15 N -0.866 5.866 16 Si 0.914 3.086 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.130 3.870 21 C -0.126 4.126 22 C 0.467 3.533 23 O -0.504 6.504 24 O -0.367 6.367 25 C 0.035 3.965 26 C -0.192 4.192 27 C -0.015 4.015 28 C -0.077 4.077 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.268 0.732 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.149 0.851 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 -1.862 -9.371 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.051 3.949 4 H 0.116 0.884 5 C -0.223 4.223 6 N -0.084 5.084 7 N -0.049 5.049 8 C -0.143 4.143 9 C 0.336 3.664 10 O -0.483 6.483 11 N -0.141 5.141 12 C -0.445 4.445 13 H 0.129 0.871 14 C -0.165 4.165 15 N -0.504 5.504 16 Si 0.741 3.259 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.208 1.208 20 C 0.006 3.994 21 C -0.165 4.165 22 C 0.310 3.690 23 O -0.391 6.391 24 O -0.284 6.284 25 C -0.059 4.059 26 C -0.221 4.221 27 C -0.138 4.138 28 C -0.135 4.135 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.167 0.833 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.156 -2.015 -8.190 11.733 hybrid contribution -0.121 0.037 0.050 0.137 sum -8.277 -1.977 -8.140 11.776 Atomic orbital electron populations 1.21788 0.94720 1.02286 1.01909 1.21874 0.96151 0.95009 1.04235 1.21425 0.74970 0.98292 1.00164 0.88424 1.22194 1.01723 1.01119 0.97249 1.45965 1.06797 1.38940 1.16698 1.74315 1.00556 1.15272 1.14789 1.21988 0.91650 1.04137 0.96539 1.17318 0.85816 0.79825 0.83413 1.90626 1.26673 1.61432 1.69519 1.43277 1.06716 1.39658 1.24432 1.19931 0.87328 1.46422 0.90829 0.87125 1.25484 0.98086 0.96058 0.96848 1.69852 1.34079 1.41877 1.04564 0.86062 0.82172 0.78562 0.79070 1.19039 1.20858 1.20843 1.21210 0.87844 0.90813 0.99533 1.21933 0.92076 1.00572 1.01893 1.24061 0.85406 0.77729 0.81831 1.90654 1.61824 1.59561 1.27039 1.86539 1.42269 1.41355 1.58249 1.23159 0.85557 0.99277 0.97905 1.21414 0.95077 1.06185 0.99384 1.21211 0.92307 1.05087 0.95216 1.20227 1.00582 0.98996 0.93700 0.92064 0.92735 0.92115 0.91440 0.89692 0.92133 0.90780 0.90199 0.92185 0.91685 0.86317 0.87812 0.88403 0.92190 0.88683 0.92187 0.83284 0.91208 0.91966 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 37.16 0.36 -0.98 16 2 C -0.13 -1.65 5.57 -26.73 -0.15 -1.80 16 3 C 0.15 1.96 3.02 -67.93 -0.21 1.75 16 4 H 0.10 0.96 6.55 -51.93 -0.34 0.62 16 5 C -0.17 -2.11 9.13 37.16 0.34 -1.77 16 6 N -0.30 -5.05 3.04 -50.66 -0.15 -5.20 16 7 N -0.22 -4.64 8.41 33.41 0.28 -4.36 16 8 C 0.02 0.40 6.86 -82.77 -0.57 -0.16 16 9 C 0.55 14.30 7.59 -12.44 -0.09 14.20 16 10 O -0.60 -16.51 16.58 5.27 0.09 -16.42 16 11 N -0.42 -11.01 2.51 -115.96 -0.29 -11.30 16 12 C -0.32 -8.14 7.97 -15.00 -0.12 -8.26 16 13 H 0.11 2.81 5.89 -52.48 -0.31 2.50 16 14 C 0.04 1.04 5.11 -17.45 -0.09 0.95 16 15 N -0.87 -23.78 11.27 55.50 0.63 -23.16 16 16 Si 0.91 19.98 29.57 -169.99 -5.03 14.95 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.13 3.24 4.17 -4.04 -0.02 3.22 16 21 C -0.13 -2.60 6.09 -27.89 -0.17 -2.77 16 22 C 0.47 9.27 7.96 36.00 0.29 9.55 16 23 O -0.50 -11.30 15.73 -18.75 -0.29 -11.60 16 24 O -0.37 -6.18 10.56 -39.25 -0.41 -6.59 16 25 C 0.04 0.45 10.56 101.05 1.07 1.52 16 26 C -0.19 -3.75 10.73 -39.35 -0.42 -4.17 16 27 C -0.02 -0.24 6.92 -82.21 -0.57 -0.81 16 28 C -0.08 -0.82 9.92 36.00 0.36 -0.46 16 29 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 0.78 8.14 -51.94 -0.42 0.36 16 35 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.06 1.74 7.50 -51.93 -0.39 1.35 16 39 H 0.12 3.19 5.53 -51.93 -0.29 2.91 16 40 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 41 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 42 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 45 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.55 7.02 -51.93 -0.36 0.19 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -33.34 398.08 -6.61 -39.94 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.43 Total: 7.73 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 0.01 Total: 10.01 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.46 Total: -44.02 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.62 Total: -34.61 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.34 -6.61 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.661 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds