Wall clock time and date at job start Tue Mar 31 2020 20:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47131 * 2 1 4 4 H 1.08992 * 109.47365 * 304.99649 * 3 2 1 5 5 C 1.53002 * 109.47197 * 184.99936 * 3 2 1 6 6 N 1.46899 * 109.47152 * 64.79547 * 5 3 2 7 7 C 1.48538 * 110.99735 * 58.27521 * 6 5 3 8 8 C 1.54933 * 103.22506 * 159.72259 * 7 6 5 9 9 C 1.54598 * 102.92436 * 322.58244 * 8 7 6 10 10 C 1.47904 * 111.00251 * 175.66980 * 6 5 3 11 11 N 1.46503 * 109.47226 * 65.00447 * 3 2 1 12 12 C 1.34776 * 119.99504 * 253.32139 * 11 3 2 13 13 O 1.21586 * 120.00088 * 359.97438 * 12 11 3 14 14 N 1.34773 * 120.00101 * 179.97438 * 12 11 3 15 15 C 1.46505 * 120.00379 * 180.02562 * 14 12 11 16 16 H 1.09008 * 109.46544 * 324.99795 * 15 14 12 17 17 C 1.50697 * 109.47281 * 205.00387 * 15 14 12 18 18 H 1.07999 * 119.99807 * 359.97438 * 17 15 14 19 19 C 1.37874 * 120.00197 * 179.97438 * 17 15 14 20 20 N 1.31512 * 120.00014 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 120.00057 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46876 * 60.00221 * 21 19 17 23 23 H 1.48500 * 109.47092 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47308 * 299.99977 * 21 19 17 25 25 C 1.52996 * 109.47396 * 84.99839 * 15 14 12 26 26 F 1.39891 * 109.47183 * 180.02562 * 25 15 14 27 27 F 1.39898 * 109.46984 * 60.00021 * 25 15 14 28 28 F 1.39905 * 109.46909 * 300.00167 * 25 15 14 29 29 H 1.09000 * 109.46949 * 299.99762 * 1 2 3 30 30 H 1.08999 * 109.47390 * 60.00350 * 1 2 3 31 31 H 1.09005 * 109.46902 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47065 * 239.99287 * 2 1 3 33 33 H 1.09008 * 109.46890 * 119.99939 * 2 1 3 34 34 H 1.08994 * 109.47362 * 184.79845 * 5 3 2 35 35 H 1.08999 * 109.47049 * 304.79961 * 5 3 2 36 36 H 1.09003 * 110.66305 * 278.15408 * 7 6 5 37 37 H 1.08991 * 110.66789 * 41.28790 * 7 6 5 38 38 H 1.09005 * 110.72305 * 204.22748 * 8 7 6 39 39 H 1.09002 * 110.72774 * 80.94552 * 8 7 6 40 40 H 1.08999 * 110.31158 * 263.04369 * 9 8 7 41 41 H 1.09000 * 110.31019 * 140.86977 * 9 8 7 42 42 H 1.08995 * 109.91615 * 333.51238 * 10 6 5 43 43 H 1.09002 * 109.91423 * 94.60927 * 10 6 5 44 44 H 0.96996 * 120.00485 * 73.31710 * 11 3 2 45 45 H 0.96996 * 119.99889 * 359.97438 * 14 12 11 46 46 H 0.96998 * 120.00315 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 3.9492 0.8917 -1.4314 7 6 3.3451 1.6750 -2.5395 8 6 4.2378 1.3173 -3.7542 9 6 5.6499 1.2284 -3.1313 10 6 5.4124 0.9728 -1.6314 11 7 1.6525 2.0974 1.2519 12 6 0.6686 3.0185 1.2539 13 8 0.1030 3.3062 0.2168 14 7 0.3117 3.6208 2.4056 15 6 -0.7582 4.6216 2.4080 16 1 -0.7241 5.1920 1.4797 17 6 -0.5715 5.5537 3.5773 18 1 0.2606 5.4143 4.2515 19 6 -1.4629 6.5845 3.7864 20 7 -2.4759 6.7546 2.9652 21 14 -1.2319 7.7395 5.2363 22 1 0.0830 8.4199 5.1224 23 1 -2.3156 8.7548 5.2379 24 1 -1.2792 6.9623 6.5007 25 6 -2.1127 3.9200 2.5262 26 9 -3.1342 4.8757 2.5279 27 9 -2.1563 3.1880 3.7175 28 9 -2.2859 3.0548 1.4405 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.9352 2.4658 -0.0402 35 1 3.9955 0.8340 0.6681 36 1 2.3152 1.3634 -2.7139 37 1 3.3943 2.7429 -2.3272 38 1 4.1974 2.1040 -4.5076 39 1 3.9431 0.3583 -4.1804 40 1 6.1865 2.1662 -3.2749 41 1 6.2066 0.4016 -3.5723 42 1 5.8223 1.7952 -1.0451 43 1 5.8804 0.0347 -1.3328 44 1 2.1040 1.8682 2.0792 45 1 0.7627 3.3910 3.2330 46 1 -3.1033 7.4796 3.1125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932913321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:14 Heat of formation + Delta-G solvation = -169.388098 kcal Electronic energy + Delta-G solvation = -31383.636431 eV Core-core repulsion = 26700.669259 eV Total energy + Delta-G solvation = -4682.967172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.29024 -45.94044 -45.56445 -39.83872 -38.86418 -36.12106 -34.44258 -32.73838 -32.08033 -31.61687 -29.11387 -28.44060 -27.00464 -24.52998 -23.49788 -22.01644 -21.50561 -21.02654 -20.18991 -20.06380 -18.35929 -16.85022 -16.79537 -16.57086 -16.41223 -16.00103 -15.81610 -15.40683 -14.81049 -14.52310 -14.27527 -14.17236 -13.90063 -13.50787 -13.38419 -13.09882 -12.84957 -12.60426 -12.47234 -12.40681 -12.33912 -12.23925 -12.08153 -11.93059 -11.77379 -11.62185 -11.40169 -11.30717 -11.17141 -11.00682 -10.87645 -10.81158 -10.78084 -10.69493 -10.58479 -10.36903 -9.65682 -9.47654 -8.76349 -8.69778 -8.58786 -8.14237 -6.22212 -4.46060 3.12035 3.20103 3.25243 3.27590 3.78019 3.95603 4.20473 4.43622 4.47937 4.61529 4.73425 4.79566 4.90242 4.95320 5.08219 5.11505 5.28631 5.31782 5.44216 5.48428 5.55463 5.58816 5.65760 5.76626 5.79699 5.87604 5.89382 5.92936 5.96369 6.01474 6.11217 6.20557 6.26703 6.35624 6.63075 6.68227 6.76325 6.88672 6.97833 7.24248 7.40128 7.64092 7.72559 8.50712 8.70043 9.17285 9.29096 10.69407 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.003029 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.347386 B = 9243.048114 C = 9940.301630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.160 3.840 4 H 0.101 0.899 5 C 0.038 3.962 6 N -0.511 5.511 7 C 0.029 3.971 8 C -0.124 4.124 9 C -0.131 4.131 10 C 0.036 3.964 11 N -0.747 5.747 12 C 0.701 3.299 13 O -0.583 6.583 14 N -0.727 5.727 15 C 0.264 3.736 16 H 0.084 0.916 17 C -0.553 4.553 18 H 0.076 0.924 19 C 0.065 3.935 20 N -0.840 5.840 21 Si 0.915 3.085 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.416 3.584 26 F -0.138 7.138 27 F -0.211 7.211 28 F -0.216 7.216 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.391 0.609 45 H 0.393 0.607 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.391 -11.036 -6.666 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C 0.054 3.946 4 H 0.119 0.881 5 C -0.091 4.091 6 N -0.235 5.235 7 C -0.099 4.099 8 C -0.162 4.162 9 C -0.169 4.169 10 C -0.092 4.092 11 N -0.403 5.403 12 C 0.401 3.599 13 O -0.460 6.460 14 N -0.380 5.380 15 C 0.157 3.843 16 H 0.102 0.898 17 C -0.590 4.590 18 H 0.094 0.906 19 C -0.144 4.144 20 N -0.473 5.473 21 Si 0.741 3.259 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.359 3.641 26 F -0.119 7.119 27 F -0.193 7.193 28 F -0.198 7.198 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.224 0.776 45 H 0.227 0.773 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.441 -11.154 -7.682 18.390 hybrid contribution 0.473 1.072 1.761 2.115 sum 12.913 -10.081 -5.921 17.420 Atomic orbital electron populations 1.21690 0.95435 1.00514 1.02754 1.21838 0.96233 0.95810 1.02342 1.20812 0.92308 0.93660 0.87869 0.88105 1.22611 0.96215 0.98294 0.92027 1.64751 1.06412 1.50607 1.01760 1.23318 0.99586 0.96365 0.90597 1.22481 0.94360 1.02100 0.97232 1.22391 0.97672 1.01824 0.95033 1.22855 0.89078 1.01124 0.96186 1.45068 1.40184 1.44385 1.10699 1.16042 0.80079 0.79028 0.84782 1.90902 1.56734 1.67146 1.31231 1.45272 1.40164 1.44160 1.08389 1.19565 0.77922 0.84437 1.02330 0.89815 1.20842 1.13956 1.12601 1.11588 0.90608 1.25072 0.94230 0.97645 0.97425 1.70393 1.12329 1.28740 1.35807 0.86281 0.78018 0.79889 0.81691 1.19838 1.20878 1.19848 1.23169 0.92513 0.76835 0.71551 1.93395 1.62221 1.60556 1.95771 1.92981 1.97346 1.79451 1.49484 1.93075 1.96657 1.73103 1.56938 0.92669 0.92624 0.93537 0.90218 0.92485 0.94085 0.90471 0.89477 0.93353 0.91084 0.90722 0.91623 0.91095 0.93825 0.90374 0.77634 0.77338 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.70 37.16 0.36 -1.76 16 2 C -0.12 -1.50 5.55 -26.74 -0.15 -1.65 16 3 C 0.16 2.09 2.17 -67.93 -0.15 1.94 16 4 H 0.10 1.60 5.52 -51.93 -0.29 1.31 16 5 C 0.04 0.41 4.55 -3.82 -0.02 0.39 16 6 N -0.51 -5.19 4.72 -230.46 -1.09 -6.28 16 7 C 0.03 0.30 5.34 -1.90 -0.01 0.29 16 8 C -0.12 -1.02 7.06 -24.87 -0.18 -1.20 16 9 C -0.13 -0.99 6.93 -25.37 -0.18 -1.16 16 10 C 0.04 0.30 6.70 -2.75 -0.02 0.29 16 11 N -0.75 -10.81 4.50 -58.68 -0.26 -11.08 16 12 C 0.70 13.77 7.38 -86.92 -0.64 13.13 16 13 O -0.58 -13.72 14.29 5.29 0.08 -13.65 16 14 N -0.73 -14.82 4.99 -59.81 -0.30 -15.12 16 15 C 0.26 6.58 2.21 -69.08 -0.15 6.42 16 16 H 0.08 2.35 7.58 -51.92 -0.39 1.96 16 17 C -0.55 -14.10 8.46 -34.44 -0.29 -14.39 16 18 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 19 C 0.07 1.70 5.20 -17.82 -0.09 1.60 16 20 N -0.84 -23.10 9.51 55.43 0.53 -22.57 16 21 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 C 0.42 10.77 2.81 37.16 0.10 10.87 16 26 F -0.14 -3.87 12.92 2.25 0.03 -3.84 16 27 F -0.21 -5.26 16.94 2.25 0.04 -5.22 16 28 F -0.22 -5.57 15.68 2.25 0.04 -5.53 16 29 H 0.05 0.94 7.22 -51.93 -0.37 0.57 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.92 7.61 -51.93 -0.40 0.53 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.04 0.48 7.97 -51.93 -0.41 0.07 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.96 7.55 -51.93 -0.39 0.57 16 37 H 0.05 0.56 8.01 -51.93 -0.42 0.14 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.04 0.38 7.66 -51.93 -0.40 -0.02 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.39 4.53 8.83 -40.82 -0.36 4.17 16 45 H 0.39 6.89 8.55 -40.82 -0.35 6.54 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 374.27 15.07 5.64 5.64 Total: -1.00 -30.13 374.27 -8.86 -38.99 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.13 Total: 8.81 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: -1.41 Total: 14.77 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -1.12 Total: -55.05 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.65 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.13 -8.86 -38.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932913321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.397 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds