Wall clock time and date at job start Tue Mar 31 2020 20:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47103 * 2 1 4 4 H 1.09000 * 109.47119 * 305.00426 * 3 2 1 5 5 C 1.53011 * 109.47069 * 64.99703 * 3 2 1 6 6 C 1.50698 * 109.47320 * 184.99836 * 3 2 1 7 7 C 1.41260 * 126.70394 * 274.71618 * 6 3 2 8 8 C 1.36827 * 103.84517 * 179.85601 * 7 6 3 9 9 C 1.47513 * 126.94379 * 180.12989 * 8 7 6 10 10 O 1.21577 * 119.99913 * 0.29282 * 9 8 7 11 11 N 1.34777 * 119.99911 * 180.30042 * 9 8 7 12 12 C 1.46498 * 120.00269 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47335 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.51292 * 59.99717 * 13 12 11 15 15 C 1.53293 * 109.51097 * 180.09884 * 13 12 11 16 16 N 1.47150 * 108.38622 * 172.22545 * 15 13 12 17 17 C 1.36937 * 120.98396 * 129.47995 * 16 15 13 18 18 H 1.07999 * 120.00360 * 206.22341 * 17 16 15 19 19 C 1.38816 * 119.99884 * 26.22880 * 17 16 15 20 20 N 1.31620 * 119.99804 * 16.91578 * 19 17 16 21 21 Si 1.86797 * 120.00181 * 196.91563 * 19 17 16 22 22 H 1.48503 * 109.46877 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47204 * 119.99827 * 21 19 17 24 24 H 1.48503 * 109.46964 * 240.00113 * 21 19 17 25 25 C 1.47150 * 118.03585 * 309.47004 * 16 15 13 26 26 C 1.53290 * 108.38739 * 50.52700 * 25 16 15 27 27 O 1.42959 * 109.26705 * 307.72582 * 26 25 16 28 28 O 1.34638 * 106.10993 * 0.39371 * 8 7 6 29 29 N 1.20881 * 111.47044 * 359.73180 * 28 8 7 30 30 H 1.08992 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47014 * 300.00143 * 1 2 3 32 32 H 1.08996 * 109.46903 * 59.99646 * 1 2 3 33 33 H 1.09001 * 109.46776 * 119.99618 * 2 1 3 34 34 H 1.08992 * 109.47220 * 239.99982 * 2 1 3 35 35 H 1.09000 * 109.46560 * 60.00380 * 5 3 2 36 36 H 1.08997 * 109.47185 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.47231 * 300.00405 * 5 3 2 38 38 H 1.08001 * 128.08064 * 359.97320 * 7 6 3 39 39 H 0.97005 * 120.00123 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.46675 * 299.99566 * 12 11 9 41 41 H 1.09002 * 109.47354 * 59.99052 * 12 11 9 42 42 H 1.09006 * 109.68130 * 291.94689 * 15 13 12 43 43 H 1.08999 * 109.68446 * 52.46655 * 15 13 12 44 44 H 0.97001 * 120.00047 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.68561 * 170.25786 * 25 16 15 46 46 H 1.09005 * 109.67550 * 290.77084 * 25 16 15 47 47 H 1.09006 * 109.51232 * 67.62685 * 26 25 16 48 48 H 1.08997 * 109.51437 * 187.77522 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5420 1.4443 -0.1238 7 6 4.4760 1.3195 0.9286 8 6 5.6891 1.3768 0.2982 9 6 7.0203 1.2919 0.9279 10 8 7.1155 1.1507 2.1317 11 7 8.1312 1.3708 0.1687 12 6 9.4533 1.2859 0.7939 13 6 10.5347 1.4016 -0.2822 14 1 10.4367 2.3582 -0.7955 15 6 11.9186 1.3103 0.3708 16 7 12.9306 1.2353 -0.6948 17 6 14.0168 2.0692 -0.6954 18 1 14.5061 2.3181 -1.6255 19 6 14.4892 2.5945 0.4995 20 7 14.1294 2.0534 1.6441 21 14 15.6356 4.0692 0.4831 22 1 15.8857 4.4860 -0.9201 23 1 15.0102 5.1907 1.2291 24 1 16.9226 3.7030 1.1271 25 6 12.7411 0.2376 -1.7596 26 6 11.3171 0.3810 -2.3088 27 8 10.3866 0.3367 -1.2244 28 8 5.4221 1.5324 -1.0123 29 7 4.2319 1.5668 -1.2203 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 2.0699 1.5875 2.1492 36 1 1.9989 3.1541 1.3076 37 1 0.5490 2.1252 1.3970 38 1 4.2787 1.2038 1.9841 39 1 8.0552 1.4832 -0.7918 40 1 9.5678 2.0968 1.5132 41 1 9.5521 0.3290 1.3065 42 1 12.0949 2.1950 0.9828 43 1 11.9729 0.4169 0.9929 44 1 14.4591 2.4207 2.4792 45 1 13.4619 0.4116 -2.5584 46 1 12.8790 -0.7642 -1.3527 47 1 11.2223 1.3335 -2.8303 48 1 11.1096 -0.4356 -3.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035543872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:49 Heat of formation + Delta-G solvation = -8.043414 kcal Electronic energy + Delta-G solvation = -29006.598498 eV Core-core repulsion = 24872.484497 eV Total energy + Delta-G solvation = -4134.114001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.21858 -39.71942 -38.46454 -37.50862 -35.03331 -34.39730 -33.47165 -32.34387 -31.36026 -30.82585 -29.89123 -27.51758 -25.98684 -25.69662 -23.77333 -23.32771 -23.19647 -21.72489 -21.27512 -20.19342 -19.55883 -18.42599 -17.93142 -17.05475 -16.41381 -16.11150 -15.93568 -15.41417 -15.19524 -15.11414 -14.77038 -14.38029 -14.21576 -14.14113 -13.92521 -13.76483 -13.30411 -13.16206 -13.00791 -12.86511 -12.58148 -12.35990 -12.27211 -11.88101 -11.63995 -11.57960 -11.40796 -11.15001 -11.07627 -10.89538 -10.77295 -10.51646 -10.36103 -10.31404 -10.28172 -10.04694 -9.91913 -9.69880 -9.15782 -9.05985 -8.59354 -6.80285 -5.88820 -3.32392 0.64554 1.80377 2.47208 2.92275 3.14672 3.31735 3.39846 3.41644 3.64850 4.13991 4.23444 4.40346 4.46063 4.59675 4.66333 4.81227 4.85543 5.02157 5.09432 5.10715 5.12301 5.25717 5.31508 5.44787 5.48870 5.51916 5.54142 5.55091 5.59706 5.70886 5.81341 5.86038 5.88011 5.90192 5.94128 6.05317 6.11863 6.27753 6.40092 6.51028 6.74641 7.01728 7.31157 7.42095 7.67598 7.78155 7.85132 7.98380 8.28673 9.06590 9.69462 10.26212 11.19368 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.002049 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.099296 B =13661.840933 C =14212.602554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.013 4.013 4 H 0.090 0.910 5 C -0.148 4.148 6 C 0.017 3.983 7 C -0.152 4.152 8 C -0.075 4.075 9 C 0.599 3.401 10 O -0.515 6.515 11 N -0.700 5.700 12 C 0.131 3.869 13 C 0.054 3.946 14 H 0.058 0.942 15 C 0.152 3.848 16 N -0.594 5.594 17 C -0.256 4.256 18 H 0.070 0.930 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.108 3.892 26 C 0.051 3.949 27 O -0.390 6.390 28 O 0.117 5.883 29 N -0.346 5.346 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.182 0.818 39 H 0.410 0.590 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.032 0.968 44 H 0.256 0.744 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.044 0.956 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.233 -1.801 -3.333 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.174 4.174 8 C -0.141 4.141 9 C 0.382 3.618 10 O -0.392 6.392 11 N -0.351 5.351 12 C 0.008 3.992 13 C -0.006 4.006 14 H 0.076 0.924 15 C 0.026 3.974 16 N -0.318 5.318 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.216 1.216 25 C -0.018 4.018 26 C -0.028 4.028 27 O -0.310 6.310 28 O 0.045 5.955 29 N -0.046 5.046 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.199 0.801 39 H 0.245 0.755 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.499 -1.835 -3.572 24.826 hybrid contribution 0.909 0.848 0.332 1.287 sum -23.590 -0.987 -3.240 23.832 Atomic orbital electron populations 1.21818 0.94970 1.02052 1.02133 1.21573 0.96335 0.94738 1.02849 1.19611 0.85311 0.97953 1.00304 0.89210 1.21907 1.02045 1.00710 0.95926 1.23608 0.98846 1.03232 0.88395 1.22784 0.89421 1.03148 1.02081 1.24357 0.97423 1.08042 0.84269 1.16540 0.81129 0.78073 0.86071 1.90882 1.85424 1.49954 1.12919 1.45913 1.05768 1.71661 1.11711 1.21589 0.78632 1.03704 0.95316 1.23168 0.97201 0.90057 0.90178 0.92360 1.21310 0.83059 1.02676 0.90387 1.44043 1.23505 1.38271 1.25944 1.19233 1.06241 1.20575 0.92476 0.91267 1.25063 0.98721 1.00207 0.95639 1.70023 1.47547 1.40019 0.96980 0.86192 0.80216 0.82554 0.77625 1.20226 1.21412 1.21606 1.21609 0.94269 0.93125 0.92777 1.23013 0.90946 1.00444 0.88354 1.87775 1.56407 1.49839 1.36933 1.84992 1.19419 1.66311 1.24819 1.73728 0.89290 1.17377 1.24175 0.92378 0.92155 0.92560 0.91274 0.91650 0.91824 0.92132 0.91167 0.80100 0.75483 0.89305 0.90056 0.88494 0.94950 0.93424 0.91930 0.95505 0.93763 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.67 37.16 0.36 -0.41 16 2 C -0.12 -0.78 5.38 -26.73 -0.14 -0.92 16 3 C -0.01 -0.09 2.85 -91.77 -0.26 -0.36 16 4 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -0.87 8.56 37.16 0.32 -0.55 16 6 C 0.02 0.18 6.20 -82.17 -0.51 -0.33 16 7 C -0.15 -1.64 10.12 -38.94 -0.39 -2.03 16 8 C -0.07 -0.93 7.29 -36.31 -0.26 -1.19 16 9 C 0.60 8.56 7.82 -12.48 -0.10 8.47 16 10 O -0.52 -8.78 16.91 5.30 0.09 -8.69 16 11 N -0.70 -9.70 5.45 -61.36 -0.33 -10.04 16 12 C 0.13 2.08 5.37 -4.04 -0.02 2.06 16 13 C 0.05 0.97 2.86 -26.58 -0.08 0.89 16 14 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 15 C 0.15 3.47 4.73 -3.54 -0.02 3.45 16 16 N -0.59 -14.43 3.05 -171.83 -0.52 -14.95 16 17 C -0.26 -6.80 9.65 -15.06 -0.15 -6.95 16 18 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 19 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 20 N -0.90 -25.38 11.14 55.49 0.62 -24.77 16 21 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 C 0.11 2.20 6.73 -3.54 -0.02 2.17 16 26 C 0.05 0.85 6.98 37.31 0.26 1.12 16 27 O -0.39 -6.98 10.14 -35.23 -0.36 -7.34 16 28 O 0.12 1.45 11.04 15.56 0.17 1.63 16 29 N -0.35 -4.25 12.04 33.52 0.40 -3.84 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.26 6.57 -51.93 -0.34 -0.08 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.36 7.48 -51.93 -0.39 -0.03 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.31 6.56 -51.93 -0.34 -0.03 16 38 H 0.18 1.65 7.65 -52.49 -0.40 1.24 16 39 H 0.41 5.09 8.18 -40.82 -0.33 4.76 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -30.69 392.44 -7.73 -38.42 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.58 Total: 2.23 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.10 Total: 5.38 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.16 Total: -53.60 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.10 Total: -14.41 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.69 -7.73 -38.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035543872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.376 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds