Wall clock time and date at job start Tue Mar 31 2020 20:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47137 * 2 1 4 4 H 1.08998 * 109.46942 * 55.00263 * 3 2 1 5 5 C 1.52998 * 109.47280 * 295.00437 * 3 2 1 6 6 C 1.50702 * 109.47406 * 175.00292 * 3 2 1 7 7 C 1.41257 * 126.70378 * 84.99954 * 6 3 2 8 8 C 1.36819 * 103.84873 * 179.97438 * 7 6 3 9 9 C 1.47510 * 126.94715 * 179.97438 * 8 7 6 10 10 O 1.21584 * 119.99857 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00125 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99995 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47086 * 179.97438 * 12 11 9 14 14 H 1.08991 * 109.51464 * 304.99681 * 13 12 11 15 15 C 1.53303 * 109.51347 * 184.89610 * 13 12 11 16 16 N 1.47149 * 108.38429 * 187.77545 * 15 13 12 17 17 C 1.36941 * 120.98068 * 230.55917 * 16 15 13 18 18 H 1.07998 * 120.00201 * 26.23720 * 17 16 15 19 19 C 1.38814 * 119.99657 * 206.24269 * 17 16 15 20 20 N 1.31618 * 120.00397 * 16.90432 * 19 17 16 21 21 Si 1.86800 * 119.99606 * 196.90315 * 19 17 16 22 22 H 1.48512 * 109.46847 * 90.00164 * 21 19 17 23 23 H 1.48495 * 109.47303 * 209.99935 * 21 19 17 24 24 H 1.48496 * 109.47356 * 330.00401 * 21 19 17 25 25 C 1.47146 * 118.03804 * 50.53636 * 16 15 13 26 26 C 1.53299 * 108.38397 * 309.46690 * 25 16 15 27 27 O 1.42953 * 109.26556 * 52.27647 * 26 25 16 28 28 O 1.34645 * 106.11021 * 359.97438 * 8 7 6 29 29 N 1.20885 * 111.46384 * 359.75204 * 28 8 7 30 30 H 1.08999 * 109.47733 * 59.99748 * 1 2 3 31 31 H 1.09008 * 109.46814 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46935 * 299.99273 * 1 2 3 33 33 H 1.09003 * 109.46935 * 240.00726 * 2 1 3 34 34 H 1.08999 * 109.47733 * 120.00252 * 2 1 3 35 35 H 1.08999 * 109.47727 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47505 * 299.99750 * 5 3 2 37 37 H 1.09003 * 109.47451 * 59.99629 * 5 3 2 38 38 H 1.08002 * 128.07859 * 0.02562 * 7 6 3 39 39 H 0.96998 * 120.00142 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.47205 * 299.99903 * 12 11 9 41 41 H 1.09005 * 109.47477 * 60.00124 * 12 11 9 42 42 H 1.08992 * 109.68005 * 307.50306 * 15 13 12 43 43 H 1.08996 * 109.67951 * 68.05199 * 15 13 12 44 44 H 0.96996 * 119.99896 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.68276 * 69.18899 * 25 16 15 46 46 H 1.08999 * 109.68459 * 189.70126 * 25 16 15 47 47 H 1.08998 * 109.51429 * 172.22879 * 26 25 16 48 48 H 1.09007 * 109.50866 * 292.32357 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5419 1.4444 0.1238 7 6 4.4759 1.3140 -0.9280 8 6 5.6889 1.3778 -0.2985 9 6 7.0202 1.2930 -0.9282 10 8 7.1153 1.1516 -2.1320 11 7 8.1311 1.3734 -0.1692 12 6 9.4531 1.2897 -0.7947 13 6 10.5347 1.4081 0.2810 14 1 10.3817 2.3239 0.8519 15 6 11.9159 1.4437 -0.3832 16 7 12.9399 1.3683 0.6709 17 6 13.9713 2.2678 0.7172 18 1 13.8488 3.2524 0.2906 19 6 15.1745 1.9141 1.3124 20 7 15.4532 0.6464 1.5306 21 14 16.3980 3.2373 1.8036 22 1 16.1229 3.6735 3.1963 23 1 17.7769 2.6926 1.7188 24 1 16.2670 4.3978 0.8865 25 6 12.8224 0.2982 1.6740 26 6 11.3971 0.3184 2.2379 27 8 10.4618 0.2811 1.1575 28 8 5.4221 1.5337 1.0121 29 7 4.2318 1.5727 1.2195 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.9980 3.1544 -1.3072 36 1 2.0697 1.5877 -2.1492 37 1 0.5488 2.1253 -1.3969 38 1 4.2785 1.1931 -1.9829 39 1 8.0552 1.4866 0.7911 40 1 9.5529 0.3328 -1.3069 41 1 9.5667 2.1006 -1.5143 42 1 12.0205 0.5943 -1.0582 43 1 12.0311 2.3729 -0.9412 44 1 16.2937 0.3993 1.9468 45 1 13.0185 -0.6667 1.2062 46 1 13.5385 0.4684 2.4780 47 1 11.2471 -0.5499 2.8795 48 1 11.2478 1.2294 2.8175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035543875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:52 Heat of formation + Delta-G solvation = -8.019607 kcal Electronic energy + Delta-G solvation = -28817.963175 eV Core-core repulsion = 24683.850206 eV Total energy + Delta-G solvation = -4134.112969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.27248 -39.82067 -38.48907 -37.54598 -35.14019 -34.37645 -33.51965 -32.42285 -31.49933 -30.64297 -29.92438 -27.67743 -25.95848 -25.72899 -23.83569 -23.34111 -23.14363 -21.83849 -21.33798 -20.27590 -19.57175 -18.49173 -17.98533 -16.98769 -16.48186 -16.22316 -16.05432 -15.44427 -15.27564 -14.95671 -14.90721 -14.43281 -14.29627 -14.17875 -13.90343 -13.79901 -13.27211 -13.19437 -13.13514 -12.79599 -12.61058 -12.50348 -12.30813 -11.92128 -11.67331 -11.61568 -11.44032 -11.15910 -11.10790 -10.90153 -10.78409 -10.53135 -10.43058 -10.36066 -10.28218 -10.01876 -9.98041 -9.71333 -9.21173 -9.11494 -8.58124 -6.80215 -5.87978 -3.32039 0.58011 1.75488 2.40082 2.83087 3.05906 3.32366 3.39485 3.40713 3.60405 4.10270 4.19130 4.39543 4.42725 4.55104 4.62088 4.74839 4.80592 4.98835 5.03398 5.06491 5.07879 5.21847 5.29308 5.40005 5.41533 5.45739 5.48786 5.51789 5.56363 5.66744 5.72490 5.74057 5.82766 5.87360 5.93592 6.09745 6.17175 6.32343 6.33242 6.43992 6.69764 7.05982 7.20168 7.48213 7.67198 7.77161 7.80698 7.89431 8.29379 9.07424 9.70022 10.26443 11.20102 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.031421 B = 0.001862 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.918968 B =15037.151312 C =15232.042077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.013 4.013 4 H 0.090 0.910 5 C -0.148 4.148 6 C 0.017 3.983 7 C -0.150 4.150 8 C -0.077 4.077 9 C 0.602 3.398 10 O -0.516 6.516 11 N -0.701 5.701 12 C 0.129 3.871 13 C 0.063 3.937 14 H 0.061 0.939 15 C 0.122 3.878 16 N -0.593 5.593 17 C -0.257 4.257 18 H 0.070 0.930 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.389 6.389 28 O 0.118 5.882 29 N -0.344 5.344 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.182 0.818 39 H 0.411 0.589 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.031 0.969 43 H 0.065 0.935 44 H 0.255 0.745 45 H 0.029 0.971 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.842 0.653 -2.754 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.173 4.173 8 C -0.143 4.143 9 C 0.384 3.616 10 O -0.393 6.393 11 N -0.352 5.352 12 C 0.005 3.995 13 C 0.003 3.997 14 H 0.079 0.921 15 C -0.005 4.005 16 N -0.317 5.317 17 C -0.386 4.386 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.013 3.987 26 C -0.038 4.038 27 O -0.309 6.309 28 O 0.045 5.955 29 N -0.044 5.044 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.199 0.801 39 H 0.246 0.754 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.113 0.887 47 H 0.100 0.900 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -27.002 0.503 -2.302 27.105 hybrid contribution 0.984 0.704 0.088 1.213 sum -26.018 1.207 -2.214 26.140 Atomic orbital electron populations 1.21818 0.94946 1.02077 1.02140 1.21573 0.96363 0.94707 1.02856 1.19616 0.85278 0.97988 1.00328 0.89179 1.21906 1.02085 1.00681 0.95905 1.23616 0.98880 1.03176 0.88405 1.22782 0.89409 1.02992 1.02092 1.24307 0.97350 1.08310 0.84344 1.16519 0.81133 0.77894 0.86025 1.90877 1.85485 1.49986 1.12936 1.45888 1.05683 1.71808 1.11791 1.21583 0.79001 1.03593 0.95277 1.22825 0.95791 0.89703 0.91361 0.92096 1.21434 0.87395 1.00127 0.91566 1.44060 1.26696 1.34150 1.26800 1.19210 0.90503 0.92697 1.36187 0.91267 1.25051 0.96654 0.95892 1.01994 1.70031 1.23960 1.14533 1.46096 0.86234 0.80411 0.81093 0.78690 1.21363 1.21659 1.20358 1.21456 0.92251 0.91106 0.93880 1.23334 0.91915 1.00352 0.88200 1.87788 1.58864 1.43754 1.40487 1.85002 1.19447 1.66302 1.24740 1.73735 0.89266 1.17229 1.24173 0.92149 0.92360 0.92551 0.91281 0.91632 0.92141 0.91834 0.91149 0.80088 0.75376 0.89974 0.89449 0.95125 0.91667 0.93456 0.95319 0.88725 0.89963 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.67 37.16 0.36 -0.37 16 2 C -0.12 -0.74 5.38 -26.73 -0.14 -0.88 16 3 C -0.01 -0.09 2.85 -91.77 -0.26 -0.35 16 4 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.15 -0.80 8.56 37.16 0.32 -0.48 16 6 C 0.02 0.17 6.20 -82.17 -0.51 -0.34 16 7 C -0.15 -1.52 10.13 -38.95 -0.39 -1.91 16 8 C -0.08 -0.89 7.29 -36.32 -0.26 -1.16 16 9 C 0.60 7.91 7.82 -12.48 -0.10 7.81 16 10 O -0.52 -8.11 16.91 5.29 0.09 -8.02 16 11 N -0.70 -8.84 5.50 -61.36 -0.34 -9.18 16 12 C 0.13 1.79 5.34 -4.04 -0.02 1.77 16 13 C 0.06 1.04 2.81 -26.57 -0.07 0.97 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.12 2.43 6.02 -3.53 -0.02 2.41 16 16 N -0.59 -14.43 3.05 -171.83 -0.52 -14.95 16 17 C -0.26 -6.83 9.65 -15.06 -0.15 -6.97 16 18 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 19 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 20 N -0.90 -25.57 11.14 55.49 0.62 -24.96 16 21 Si 0.91 21.15 29.59 -169.99 -5.03 16.12 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.14 3.22 5.45 -3.53 -0.02 3.20 16 26 C 0.04 0.74 6.98 37.31 0.26 1.00 16 27 O -0.39 -7.01 10.33 -35.23 -0.36 -7.37 16 28 O 0.12 1.40 11.04 15.54 0.17 1.57 16 29 N -0.34 -4.07 12.04 33.52 0.40 -3.67 16 30 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 31 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.32 7.48 -51.93 -0.39 -0.06 16 37 H 0.07 0.29 6.57 -51.93 -0.34 -0.06 16 38 H 0.18 1.51 7.65 -52.49 -0.40 1.11 16 39 H 0.41 4.70 8.30 -40.82 -0.34 4.36 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.23 7.96 -51.93 -0.41 0.81 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 47 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -30.88 392.75 -7.74 -38.62 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.59 Total: 1.24 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.10 Total: 4.68 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.16 Total: -52.75 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.10 Total: -13.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.88 -7.74 -38.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035543875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.603 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds