Wall clock time and date at job start Tue Mar 31 2020 20:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47135 * 2 1 4 4 H 1.09000 * 109.47108 * 55.00004 * 3 2 1 5 5 C 1.53002 * 109.47012 * 295.00053 * 3 2 1 6 6 C 1.50699 * 109.47079 * 174.99756 * 3 2 1 7 7 C 1.41264 * 126.70508 * 85.00535 * 6 3 2 8 8 C 1.36820 * 103.84338 * 179.97438 * 7 6 3 9 9 C 1.47520 * 126.93958 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99836 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99880 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99940 * 179.72213 * 11 9 8 13 13 C 1.53000 * 109.47323 * 180.27855 * 12 11 9 14 14 H 1.08995 * 109.50859 * 60.00728 * 13 12 11 15 15 C 1.53296 * 109.51343 * 180.10436 * 13 12 11 16 16 N 1.47148 * 108.38648 * 172.22613 * 15 13 12 17 17 C 1.36931 * 120.98263 * 129.48544 * 16 15 13 18 18 H 1.07998 * 120.00137 * 333.61316 * 17 16 15 19 19 C 1.38813 * 120.00238 * 153.61857 * 17 16 15 20 20 N 1.31619 * 119.99771 * 343.16306 * 19 17 16 21 21 Si 1.86793 * 120.00533 * 163.16791 * 19 17 16 22 22 H 1.48503 * 109.47059 * 94.42545 * 21 19 17 23 23 H 1.48496 * 109.47485 * 214.42688 * 21 19 17 24 24 H 1.48502 * 109.47134 * 334.43158 * 21 19 17 25 25 C 1.47158 * 118.03639 * 309.46954 * 16 15 13 26 26 C 1.53300 * 108.38404 * 50.52787 * 25 16 15 27 27 O 1.42954 * 109.26446 * 307.72540 * 26 25 16 28 28 O 1.34632 * 106.11891 * 0.23980 * 8 7 6 29 29 N 1.20896 * 111.46798 * 359.56293 * 28 8 7 30 30 H 1.09002 * 109.47019 * 59.99873 * 1 2 3 31 31 H 1.08994 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47080 * 300.00118 * 1 2 3 33 33 H 1.08993 * 109.47799 * 240.00368 * 2 1 3 34 34 H 1.09002 * 109.47083 * 119.99342 * 2 1 3 35 35 H 1.08992 * 109.47294 * 59.99775 * 5 3 2 36 36 H 1.09006 * 109.46693 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.46746 * 299.99280 * 5 3 2 38 38 H 1.07993 * 128.07558 * 359.95988 * 7 6 3 39 39 H 0.96998 * 119.99913 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.47401 * 300.28598 * 12 11 9 41 41 H 1.09012 * 109.46890 * 60.27942 * 12 11 9 42 42 H 1.09000 * 109.68477 * 291.95144 * 15 13 12 43 43 H 1.09001 * 109.67877 * 52.46714 * 15 13 12 44 44 H 0.96999 * 120.00556 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.68255 * 170.25644 * 25 16 15 46 46 H 1.08995 * 109.67945 * 290.77355 * 25 16 15 47 47 H 1.09003 * 109.50916 * 67.62897 * 26 25 16 48 48 H 1.08993 * 109.51293 * 187.77239 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5419 1.4443 0.1239 7 6 4.4760 1.3140 -0.9278 8 6 5.6890 1.3777 -0.2980 9 6 7.0203 1.2929 -0.9277 10 8 7.1156 1.1515 -2.1315 11 7 8.1311 1.3732 -0.1686 12 6 9.4532 1.2828 -0.7931 13 6 10.5346 1.3950 0.2834 14 1 10.4171 0.5849 1.0031 15 6 11.9185 1.3032 -0.3695 16 7 12.9345 1.5999 0.6527 17 6 14.0024 0.7654 0.8483 18 1 13.9218 -0.2823 0.5987 19 6 15.1885 1.2659 1.3675 20 7 15.4131 2.5627 1.3636 21 14 16.4659 0.0989 2.0716 22 1 17.4640 -0.2332 1.0235 23 1 17.1501 0.7476 3.2189 24 1 15.7991 -1.1455 2.5321 25 6 12.7694 2.8203 1.4583 26 6 11.3439 2.8381 2.0221 27 8 10.4120 2.6514 0.9543 28 8 5.4220 1.5275 1.0130 29 7 4.2317 1.5669 1.2205 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 0.5490 2.1253 -1.3970 36 1 1.9982 3.1544 -1.3071 37 1 2.0699 1.5876 -2.1491 38 1 4.2787 1.1922 -1.9825 39 1 8.0551 1.4863 0.7918 40 1 9.5484 0.3255 -1.3055 41 1 9.5713 2.0933 -1.5126 42 1 12.0740 0.2977 -0.7606 43 1 11.9905 2.0277 -1.1806 44 1 16.2421 2.9125 1.7260 45 1 13.4882 2.8194 2.2776 46 1 12.9279 3.6979 0.8318 47 1 11.2298 2.0338 2.7489 48 1 11.1558 3.7964 2.5061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035543877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:55 Heat of formation + Delta-G solvation = -7.918585 kcal Electronic energy + Delta-G solvation = -28827.627483 eV Core-core repulsion = 24693.518894 eV Total energy + Delta-G solvation = -4134.108588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.26495 -39.81582 -38.48884 -37.54395 -35.13271 -34.36886 -33.51537 -32.41852 -31.50130 -30.64031 -29.92348 -27.68108 -25.95625 -25.72612 -23.83536 -23.33969 -23.13708 -21.83207 -21.33007 -20.25558 -19.58340 -18.49055 -17.97858 -16.98708 -16.47702 -16.24925 -16.01812 -15.44102 -15.28234 -14.96343 -14.88079 -14.43905 -14.31084 -14.16925 -13.89413 -13.79878 -13.28303 -13.19539 -13.14100 -12.78676 -12.60945 -12.49699 -12.30706 -11.91932 -11.67035 -11.61432 -11.43881 -11.16095 -11.10949 -10.89487 -10.76611 -10.51752 -10.43597 -10.35632 -10.31445 -10.01659 -9.97535 -9.71058 -9.20365 -9.11359 -8.58016 -6.79620 -5.88109 -3.31872 0.58576 1.75869 2.40666 2.83670 3.06474 3.31827 3.39376 3.41271 3.60811 4.09786 4.19851 4.39670 4.42731 4.55371 4.62363 4.75462 4.80814 4.99038 5.03889 5.06591 5.08207 5.21941 5.29467 5.38977 5.41798 5.46027 5.48669 5.52248 5.56251 5.66765 5.72829 5.74434 5.82788 5.87278 5.94325 6.09930 6.17431 6.32408 6.33144 6.44030 6.69864 7.05903 7.21418 7.48179 7.67127 7.77345 7.80813 7.90225 8.29440 9.07409 9.70164 10.26690 11.20092 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.001855 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.265130 B =15089.884088 C =15167.740347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.013 4.013 4 H 0.090 0.910 5 C -0.148 4.148 6 C 0.017 3.983 7 C -0.151 4.151 8 C -0.077 4.077 9 C 0.601 3.399 10 O -0.517 6.517 11 N -0.700 5.700 12 C 0.129 3.871 13 C 0.063 3.937 14 H 0.061 0.939 15 C 0.122 3.878 16 N -0.593 5.593 17 C -0.257 4.257 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.390 6.390 28 O 0.118 5.882 29 N -0.344 5.344 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.182 0.818 39 H 0.411 0.589 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.255 0.745 45 H 0.094 0.906 46 H 0.029 0.971 47 H 0.042 0.958 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.775 -2.377 -2.428 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.173 4.173 8 C -0.143 4.143 9 C 0.384 3.616 10 O -0.393 6.393 11 N -0.351 5.351 12 C 0.006 3.994 13 C 0.003 3.997 14 H 0.079 0.921 15 C -0.005 4.005 16 N -0.317 5.317 17 C -0.386 4.386 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.013 3.987 26 C -0.038 4.038 27 O -0.309 6.309 28 O 0.045 5.955 29 N -0.044 5.044 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.199 0.801 39 H 0.247 0.753 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.951 -2.100 -1.996 27.106 hybrid contribution 1.033 -0.652 0.175 1.234 sum -25.918 -2.752 -1.821 26.127 Atomic orbital electron populations 1.21816 0.94948 1.02064 1.02162 1.21571 0.96366 0.94721 1.02814 1.19617 0.85288 0.97965 1.00348 0.89171 1.21906 1.02074 1.00719 0.95887 1.23619 0.98874 1.03182 0.88408 1.22780 0.89407 1.03023 1.02087 1.24306 0.97347 1.08273 0.84351 1.16525 0.81143 0.77918 0.86017 1.90876 1.85489 1.50086 1.12888 1.45857 1.05623 1.71676 1.11910 1.21594 0.79036 1.03150 0.95653 1.22827 0.95706 0.87189 0.93959 0.92095 1.21435 0.87478 0.99799 0.91826 1.44056 1.24580 1.25868 1.37195 1.19187 0.89708 0.90045 1.39636 0.91324 1.25051 0.96805 0.95865 1.01874 1.70031 1.25301 1.11124 1.48169 0.86245 0.81383 0.80220 0.78711 1.21337 1.21466 1.20372 1.21451 0.92188 0.88596 0.96434 1.23335 0.91993 1.00010 0.88444 1.87777 1.57659 1.36140 1.49330 1.85002 1.19446 1.66338 1.24692 1.73747 0.89264 1.17214 1.24185 0.92145 0.92373 0.92536 0.91298 0.91658 0.91153 0.92110 0.91841 0.80095 0.75293 0.89506 0.90032 0.91676 0.95149 0.93473 0.88757 0.95314 0.93994 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.67 37.16 0.36 -0.36 16 2 C -0.12 -0.73 5.38 -26.73 -0.14 -0.87 16 3 C -0.01 -0.09 2.85 -91.77 -0.26 -0.35 16 4 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.15 -0.82 8.56 37.16 0.32 -0.50 16 6 C 0.02 0.17 6.20 -82.16 -0.51 -0.34 16 7 C -0.15 -1.52 10.13 -38.95 -0.39 -1.92 16 8 C -0.08 -0.89 7.29 -36.31 -0.26 -1.16 16 9 C 0.60 7.93 7.82 -12.48 -0.10 7.84 16 10 O -0.52 -8.13 16.91 5.29 0.09 -8.04 16 11 N -0.70 -8.88 5.45 -61.35 -0.33 -9.22 16 12 C 0.13 1.79 5.37 -4.05 -0.02 1.77 16 13 C 0.06 1.04 2.86 -26.58 -0.08 0.97 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 15 C 0.12 2.43 6.02 -3.54 -0.02 2.41 16 16 N -0.59 -14.43 3.05 -171.83 -0.52 -14.96 16 17 C -0.26 -6.83 9.65 -15.06 -0.15 -6.97 16 18 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 19 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 20 N -0.90 -25.58 11.15 55.49 0.62 -24.96 16 21 Si 0.91 21.12 29.59 -169.99 -5.03 16.09 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.14 3.23 5.44 -3.53 -0.02 3.21 16 26 C 0.04 0.74 6.98 37.31 0.26 1.00 16 27 O -0.39 -6.98 10.14 -35.23 -0.36 -7.34 16 28 O 0.12 1.40 11.04 15.58 0.17 1.58 16 29 N -0.34 -4.09 12.04 33.52 0.40 -3.68 16 30 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.29 6.56 -51.93 -0.34 -0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.33 7.48 -51.93 -0.39 -0.06 16 38 H 0.18 1.52 7.65 -52.49 -0.40 1.11 16 39 H 0.41 4.78 8.18 -40.82 -0.33 4.44 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 42 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -30.87 392.46 -7.73 -38.61 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.58 Total: 1.30 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -1.10 Total: 4.71 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.16 Total: -52.81 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.10 Total: -13.80 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.87 -7.73 -38.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035543877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.687 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds