Wall clock time and date at job start Tue Mar 31 2020 20:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47484 * 2 1 4 4 H 1.08996 * 109.47582 * 305.00547 * 3 2 1 5 5 C 1.53004 * 109.46972 * 65.00190 * 3 2 1 6 6 C 1.50703 * 109.47630 * 184.99882 * 3 2 1 7 7 C 1.41257 * 126.70511 * 274.72001 * 6 3 2 8 8 C 1.36825 * 103.84371 * 179.85224 * 7 6 3 9 9 C 1.47516 * 126.94383 * 180.12163 * 8 7 6 10 10 O 1.21585 * 119.99826 * 0.30590 * 9 8 7 11 11 N 1.34776 * 120.00010 * 180.30002 * 9 8 7 12 12 C 1.46502 * 119.99636 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46729 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.51260 * 304.99820 * 13 12 11 15 15 C 1.53293 * 109.51314 * 184.89590 * 13 12 11 16 16 N 1.47155 * 108.38911 * 187.77510 * 15 13 12 17 17 C 1.36932 * 120.98163 * 230.55677 * 16 15 13 18 18 H 1.08001 * 119.99912 * 26.24241 * 17 16 15 19 19 C 1.38809 * 119.99953 * 206.23647 * 17 16 15 20 20 N 1.31619 * 119.99893 * 16.91105 * 19 17 16 21 21 Si 1.86797 * 120.00234 * 196.91055 * 19 17 16 22 22 H 1.48504 * 109.47423 * 60.00096 * 21 19 17 23 23 H 1.48500 * 109.47530 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47072 * 300.00128 * 21 19 17 25 25 C 1.47156 * 118.03072 * 50.53376 * 16 15 13 26 26 C 1.53294 * 108.38714 * 309.46601 * 25 16 15 27 27 O 1.42962 * 109.51011 * 65.10201 * 13 12 11 28 28 O 1.34632 * 106.11420 * 0.39723 * 8 7 6 29 29 N 1.20893 * 111.47089 * 359.72650 * 28 8 7 30 30 H 1.09004 * 109.47084 * 299.99715 * 1 2 3 31 31 H 1.09004 * 109.47440 * 59.99505 * 1 2 3 32 32 H 1.08994 * 109.47236 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47440 * 120.00495 * 2 1 3 34 34 H 1.09004 * 109.47084 * 240.00285 * 2 1 3 35 35 H 1.09000 * 109.47237 * 299.99954 * 5 3 2 36 36 H 1.08997 * 109.47198 * 59.99787 * 5 3 2 37 37 H 1.08994 * 109.47225 * 180.02562 * 5 3 2 38 38 H 1.08003 * 128.07809 * 359.96662 * 7 6 3 39 39 H 0.97000 * 119.99950 * 0.02562 * 11 9 8 40 40 H 1.09001 * 109.47371 * 299.99415 * 12 11 9 41 41 H 1.08994 * 109.47290 * 60.00202 * 12 11 9 42 42 H 1.09010 * 109.68354 * 307.50169 * 15 13 12 43 43 H 1.08998 * 109.68374 * 68.05214 * 15 13 12 44 44 H 0.96998 * 120.00026 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.67859 * 69.19411 * 25 16 15 46 46 H 1.08996 * 109.67341 * 189.70628 * 25 16 15 47 47 H 1.08999 * 109.51249 * 172.22586 * 26 25 16 48 48 H 1.09001 * 109.51082 * 292.32717 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5420 1.4442 -0.1238 7 6 4.4760 1.3193 0.9285 8 6 5.6890 1.3766 0.2981 9 6 7.0204 1.2917 0.9277 10 8 7.1156 1.1504 2.1315 11 7 8.1311 1.3706 0.1685 12 6 9.4533 1.2857 0.7938 13 6 10.5347 1.4025 -0.2822 14 1 10.3680 0.6467 -1.0496 15 6 11.9139 1.1918 0.3529 16 7 12.9409 1.4930 -0.6569 17 6 13.9579 0.6124 -0.9125 18 1 13.8187 -0.4422 -0.7256 19 6 15.1676 1.0750 -1.4118 20 7 15.4670 2.3541 -1.3307 21 14 16.3706 -0.1177 -2.1989 22 1 15.7271 -0.7715 -3.3667 23 1 17.5781 0.6211 -2.6479 24 1 16.7635 -1.1510 -1.2073 25 6 12.8425 2.7684 -1.3844 26 6 11.4181 2.9024 -1.9349 27 8 10.4815 2.7031 -0.8734 28 8 5.4221 1.5323 -1.0123 29 7 4.2318 1.5667 -1.2204 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 0.5490 2.1252 1.3970 36 1 2.0699 1.5873 2.1492 37 1 1.9983 3.1542 1.3073 38 1 4.2787 1.2036 1.9840 39 1 8.0551 1.4836 -0.7919 40 1 9.5678 2.0967 1.5130 41 1 9.5520 0.3288 1.3063 42 1 12.0310 1.8599 1.2063 43 1 12.0132 0.1568 0.6800 44 1 16.3122 2.6775 -1.6799 45 1 13.0531 3.5951 -0.7060 46 1 13.5571 2.7776 -2.2073 47 1 11.2832 3.8981 -2.3574 48 1 11.2553 2.1531 -2.7096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035543879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:59 Heat of formation + Delta-G solvation = -7.870054 kcal Electronic energy + Delta-G solvation = -28814.049785 eV Core-core repulsion = 24679.943301 eV Total energy + Delta-G solvation = -4134.106484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.27079 -39.81959 -38.48680 -37.54725 -35.13876 -34.37385 -33.51994 -32.42202 -31.49745 -30.64173 -29.92557 -27.67624 -25.95735 -25.72897 -23.83290 -23.34058 -23.14151 -21.83747 -21.34008 -20.27432 -19.57066 -18.49111 -17.98467 -16.98568 -16.47967 -16.22163 -16.05577 -15.44368 -15.27728 -14.95999 -14.89119 -14.43597 -14.31316 -14.17075 -13.89648 -13.80188 -13.27165 -13.19593 -13.13297 -12.79114 -12.61174 -12.50282 -12.30854 -11.92315 -11.67148 -11.61609 -11.44334 -11.15420 -11.11068 -10.87942 -10.78810 -10.52782 -10.43008 -10.36086 -10.31655 -10.01163 -9.97942 -9.71325 -9.21120 -9.11581 -8.57486 -6.79780 -5.87722 -3.31629 0.58060 1.75490 2.40090 2.83176 3.05950 3.33166 3.39302 3.39992 3.60429 4.10296 4.19146 4.39845 4.42517 4.54896 4.62060 4.74782 4.80429 4.98803 5.03505 5.06340 5.07960 5.21702 5.29591 5.40158 5.41558 5.45886 5.48463 5.52026 5.56069 5.66486 5.72644 5.74152 5.82583 5.87098 5.93687 6.09896 6.17272 6.32478 6.33350 6.44109 6.69858 7.06105 7.20218 7.48326 7.66907 7.77188 7.80769 7.89469 8.29674 9.07614 9.70315 10.26825 11.20393 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.029850 B = 0.001856 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.802527 B =15085.332271 C =15133.365688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.013 4.013 4 H 0.090 0.910 5 C -0.148 4.148 6 C 0.017 3.983 7 C -0.150 4.150 8 C -0.077 4.077 9 C 0.602 3.398 10 O -0.516 6.516 11 N -0.701 5.701 12 C 0.129 3.871 13 C 0.063 3.937 14 H 0.061 0.939 15 C 0.122 3.878 16 N -0.593 5.593 17 C -0.258 4.258 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.906 3.094 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.390 6.390 28 O 0.118 5.882 29 N -0.344 5.344 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.182 0.818 39 H 0.411 0.589 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.031 0.969 43 H 0.065 0.935 44 H 0.256 0.744 45 H 0.029 0.971 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.830 -1.750 2.449 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.173 4.173 8 C -0.143 4.143 9 C 0.384 3.616 10 O -0.393 6.393 11 N -0.352 5.352 12 C 0.005 3.995 13 C 0.003 3.997 14 H 0.079 0.921 15 C -0.005 4.005 16 N -0.317 5.317 17 C -0.387 4.387 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.736 3.264 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.208 1.208 25 C 0.013 3.987 26 C -0.038 4.038 27 O -0.309 6.309 28 O 0.045 5.955 29 N -0.044 5.044 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.199 0.801 39 H 0.246 0.754 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.113 0.887 47 H 0.100 0.900 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -26.984 -1.473 2.039 27.101 hybrid contribution 0.972 -0.691 -0.237 1.216 sum -26.013 -2.164 1.802 26.165 Atomic orbital electron populations 1.21818 0.94946 1.02065 1.02159 1.21571 0.96366 0.94719 1.02819 1.19616 0.85283 0.97970 1.00348 0.89171 1.21907 1.02082 1.00715 0.95886 1.23619 0.98878 1.03207 0.88373 1.22784 0.89406 1.03015 1.02073 1.24309 0.97349 1.08278 0.84368 1.16521 0.81134 0.77906 0.86014 1.90878 1.85486 1.50034 1.12887 1.45890 1.05681 1.71779 1.11821 1.21583 0.78984 1.03203 0.95685 1.22823 0.95814 0.86271 0.94768 0.92098 1.21436 0.87389 0.99681 0.92021 1.44051 1.27482 1.19768 1.40388 1.19151 0.90803 0.88765 1.39947 0.91348 1.25048 0.96596 0.96198 1.01728 1.70021 1.23381 1.13199 1.48028 0.86316 0.80292 0.80242 0.79590 1.20961 1.21542 1.20782 1.21455 0.92272 0.87610 0.97347 1.23335 0.91883 0.99983 0.88600 1.87790 1.59300 1.31848 1.51959 1.85000 1.19450 1.66272 1.24770 1.73746 0.89257 1.17234 1.24168 0.92141 0.92545 0.92373 0.91292 0.91657 0.91150 0.91837 0.92111 0.80087 0.75375 0.89975 0.89444 0.95132 0.91673 0.93407 0.95320 0.88726 0.89962 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.67 37.16 0.36 -0.36 16 2 C -0.12 -0.73 5.38 -26.74 -0.14 -0.87 16 3 C -0.01 -0.09 2.85 -91.77 -0.26 -0.35 16 4 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 5 C -0.15 -0.81 8.56 37.16 0.32 -0.49 16 6 C 0.02 0.17 6.20 -82.17 -0.51 -0.34 16 7 C -0.15 -1.52 10.12 -38.95 -0.39 -1.91 16 8 C -0.08 -0.89 7.29 -36.31 -0.26 -1.16 16 9 C 0.60 7.91 7.82 -12.48 -0.10 7.81 16 10 O -0.52 -8.11 16.91 5.29 0.09 -8.02 16 11 N -0.70 -8.85 5.50 -61.36 -0.34 -9.18 16 12 C 0.13 1.79 5.34 -4.04 -0.02 1.77 16 13 C 0.06 1.04 2.81 -26.58 -0.07 0.97 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.12 2.43 6.02 -3.53 -0.02 2.41 16 16 N -0.59 -14.43 3.05 -171.83 -0.52 -14.96 16 17 C -0.26 -6.85 9.65 -15.06 -0.15 -7.00 16 18 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 20 N -0.90 -25.57 11.14 55.49 0.62 -24.95 16 21 Si 0.91 21.14 29.59 -169.99 -5.03 16.11 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 C 0.14 3.23 5.45 -3.53 -0.02 3.21 16 26 C 0.04 0.74 6.98 37.31 0.26 1.00 16 27 O -0.39 -7.02 10.33 -35.23 -0.36 -7.38 16 28 O 0.12 1.40 11.04 15.58 0.17 1.57 16 29 N -0.34 -4.07 12.04 33.52 0.40 -3.67 16 30 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.29 6.57 -51.93 -0.34 -0.05 16 36 H 0.06 0.33 7.48 -51.93 -0.39 -0.06 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.18 1.51 7.65 -52.48 -0.40 1.11 16 39 H 0.41 4.70 8.30 -40.82 -0.34 4.37 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 47 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -30.87 392.73 -7.74 -38.61 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.59 Total: 1.28 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.10 Total: 4.69 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.16 Total: -52.77 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.10 Total: -13.83 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.87 -7.74 -38.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035543879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.740 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds