Wall clock time and date at job start Tue Mar 31 2020 20:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46954 * 2 1 4 4 H 1.09003 * 109.52699 * 54.91779 * 3 2 1 5 5 C 1.53196 * 109.48804 * 294.82538 * 3 2 1 6 6 N 1.46924 * 108.76800 * 185.40124 * 5 3 2 7 7 C 1.34782 * 120.63354 * 233.64424 * 6 5 3 8 8 O 1.21274 * 119.99786 * 359.97312 * 7 6 5 9 9 C 1.50699 * 119.99966 * 179.97438 * 7 6 5 10 10 O 1.42894 * 109.46960 * 179.97438 * 9 7 6 11 11 C 1.35715 * 117.00287 * 180.02562 * 10 9 7 12 12 C 1.41925 * 126.87920 * 179.70758 * 11 10 9 13 13 C 1.35276 * 103.95481 * 179.90892 * 12 11 10 14 14 C 1.50705 * 126.70570 * 180.11188 * 13 12 11 15 15 O 1.34084 * 106.58400 * 0.35001 * 13 12 11 16 16 N 1.20913 * 111.71636 * 359.76224 * 15 13 12 17 17 C 1.46932 * 118.73828 * 53.61710 * 6 5 3 18 18 C 1.53196 * 108.77384 * 306.39467 * 17 6 5 19 19 C 1.53036 * 109.31536 * 54.63418 * 18 17 6 20 20 H 1.09007 * 109.46211 * 58.63452 * 19 18 17 21 21 N 1.46496 * 109.46261 * 178.61527 * 19 18 17 22 22 C 1.36945 * 119.99718 * 275.02605 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.08998 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47530 * 300.00267 * 1 2 3 32 32 H 1.09006 * 109.46977 * 59.99903 * 1 2 3 33 33 H 1.08997 * 109.47162 * 239.99729 * 2 1 3 34 34 H 1.08996 * 109.46536 * 119.99902 * 2 1 3 35 35 H 1.09005 * 109.57902 * 65.62432 * 5 3 2 36 36 H 1.08993 * 109.72026 * 305.26324 * 5 3 2 37 37 H 1.08998 * 109.47021 * 300.00015 * 9 7 6 38 38 H 1.09004 * 109.47210 * 59.99727 * 9 7 6 39 39 H 1.07999 * 128.02349 * 0.03473 * 12 11 10 40 40 H 1.09004 * 109.46996 * 180.26386 * 14 13 12 41 41 H 1.09003 * 109.47172 * 300.25998 * 14 13 12 42 42 H 1.08994 * 109.47063 * 60.25934 * 14 13 12 43 43 H 1.08990 * 109.58621 * 186.60591 * 17 6 5 44 44 H 1.09004 * 109.69937 * 66.25035 * 17 6 5 45 45 H 1.08996 * 109.49437 * 294.68012 * 18 17 6 46 46 H 1.09000 * 109.52019 * 174.60075 * 18 17 6 47 47 H 0.96996 * 120.00499 * 95.02336 * 21 19 18 48 48 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6386 2.1264 -1.3107 6 7 2.2449 3.4641 -1.3508 7 6 1.4852 4.5562 -1.5674 8 8 0.2893 4.4401 -1.7320 9 6 2.1219 5.9216 -1.6051 10 8 1.1179 6.9088 -1.8482 11 6 1.5272 8.2011 -1.9129 12 6 0.7151 9.3410 -2.1483 13 6 1.5868 10.3750 -2.1152 14 6 1.2610 11.8342 -2.3048 15 8 2.7980 9.8473 -1.8861 16 7 2.7484 8.6442 -1.7766 17 6 3.6950 3.5889 -1.1497 18 6 4.0733 2.8882 0.1590 19 6 3.5652 1.4450 0.1258 20 1 4.0008 0.9262 -0.7282 21 7 3.9541 0.7621 1.3621 22 6 5.1920 0.1858 1.4657 23 1 5.8814 0.2345 0.6359 24 6 5.5607 -0.4609 2.6373 25 7 4.7202 -0.5207 3.6485 26 14 7.2491 -1.2475 2.7784 27 1 7.1787 -2.6569 2.3158 28 1 8.2163 -0.4981 1.9369 29 1 7.6944 -1.2131 4.1946 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 0.5533 2.2155 -1.3589 36 1 1.9948 1.5384 -2.1565 37 1 2.6064 6.1230 -0.6497 38 1 2.8641 5.9545 -2.4029 39 1 -0.3516 9.3753 -2.3133 40 1 2.1748 12.4234 -2.2274 41 1 0.8155 11.9822 -3.2885 42 1 0.5573 12.1522 -1.5356 43 1 3.9665 4.6428 -1.0917 44 1 4.2228 3.1208 -1.9807 45 1 3.6187 3.4147 0.9981 46 1 5.1574 2.8897 0.2728 47 1 3.3347 0.7180 2.1073 48 1 4.9777 -0.9729 4.4671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037865940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:28 Heat of formation + Delta-G solvation = 1.844301 kcal Electronic energy + Delta-G solvation = -29387.439640 eV Core-core repulsion = 25253.754402 eV Total energy + Delta-G solvation = -4133.685238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.17823 -40.45602 -38.98894 -37.63242 -34.84834 -34.17633 -33.83170 -32.81841 -31.78560 -29.88944 -29.54541 -28.35172 -27.74991 -24.93290 -23.90997 -23.69489 -22.87307 -21.66865 -20.88148 -19.93430 -19.12155 -18.26252 -18.13580 -17.21416 -17.10287 -16.79264 -16.37137 -15.97143 -15.04673 -14.71528 -14.61824 -14.25517 -14.05879 -13.95991 -13.77999 -13.70959 -13.45156 -13.34984 -13.11607 -13.04435 -12.84552 -12.73560 -12.19113 -11.93786 -11.86715 -11.67649 -11.39627 -11.33064 -10.97186 -10.88925 -10.75165 -10.39943 -10.23948 -10.18744 -9.87512 -9.83817 -9.72904 -9.64238 -9.47828 -8.94167 -8.59768 -7.00592 -5.80953 -3.10051 1.09918 1.98531 2.09550 2.46345 2.77687 3.20476 3.40002 3.45390 3.47083 3.89307 4.25242 4.44631 4.54189 4.61396 4.77944 4.80337 4.85331 4.92743 4.95683 5.16453 5.18056 5.18751 5.28030 5.31627 5.39246 5.50214 5.56633 5.56812 5.63194 5.64154 5.84207 5.95578 6.07407 6.11201 6.25913 6.30092 6.34090 6.41555 6.47429 6.62154 6.71087 6.77848 6.91888 7.00326 7.32453 7.65271 7.94611 8.04862 8.37052 9.48641 10.05460 10.40316 11.41325 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.002378 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.180617 B =11772.510111 C =13188.063926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.121 3.879 6 N -0.600 5.600 7 C 0.519 3.481 8 O -0.527 6.527 9 C 0.047 3.953 10 O -0.257 6.257 11 C 0.214 3.786 12 C -0.233 4.233 13 C -0.010 4.010 14 C -0.075 4.075 15 O 0.099 5.901 16 N -0.410 5.410 17 C 0.102 3.898 18 C -0.152 4.152 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.282 1.282 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.179 0.821 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 20.309 -13.681 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.001 4.001 6 N -0.334 5.334 7 C 0.305 3.695 8 O -0.403 6.403 9 C -0.032 4.032 10 O -0.162 6.162 11 C 0.016 3.984 12 C -0.255 4.255 13 C -0.074 4.074 14 C -0.132 4.132 15 O 0.039 5.961 16 N -0.138 5.138 17 C -0.021 4.021 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.208 1.208 29 H -0.218 1.218 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.196 0.804 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.167 19.430 -13.572 24.761 hybrid contribution 0.314 -0.443 0.424 0.689 sum -6.853 18.988 -13.148 24.091 Atomic orbital electron populations 1.21850 0.96768 1.01099 1.01335 1.21447 0.94409 0.95542 1.03556 1.21800 0.97718 0.96389 0.96596 0.91104 1.21811 0.99550 0.80678 0.98070 1.48062 1.08641 1.06431 1.70315 1.19800 0.87056 0.85090 0.77562 1.90724 1.14381 1.86120 1.49044 1.22558 0.90294 0.86304 1.04009 1.86272 1.33153 1.09702 1.87081 1.22065 0.89564 0.87206 0.99582 1.21786 1.02347 0.88216 1.13170 1.24360 0.84367 0.98195 1.00435 1.20388 1.03598 0.85216 1.04045 1.84804 1.29711 1.14163 1.67433 1.74180 1.19610 0.92753 1.27267 1.21971 0.79100 1.01152 0.99851 1.22706 1.02458 0.99392 0.94811 1.20185 0.90748 0.90450 0.91338 0.93290 1.42407 1.16511 1.64401 1.12672 1.19204 0.91786 1.27455 0.98584 0.91216 1.24737 0.98168 1.01513 0.96429 1.69660 1.35246 1.48264 1.04745 0.86222 0.83987 0.79327 0.76817 1.21756 1.20808 1.21838 0.93106 0.92966 0.93214 0.92389 0.89696 0.88978 0.91295 0.88415 0.88646 0.80386 0.89577 0.88870 0.88844 0.90733 0.90866 0.92093 0.90278 0.78163 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.78 5.31 -26.73 -0.14 -1.92 16 3 C -0.10 -1.70 1.92 -90.50 -0.17 -1.87 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.74 5.33 -3.71 -0.02 1.72 16 6 N -0.60 -8.43 2.97 -172.76 -0.51 -8.94 16 7 C 0.52 7.83 7.78 -10.98 -0.09 7.75 16 8 O -0.53 -9.73 15.91 -14.35 -0.23 -9.96 16 9 C 0.05 0.60 4.49 36.00 0.16 0.76 16 10 O -0.26 -3.68 9.74 -38.76 -0.38 -4.06 16 11 C 0.21 2.69 8.01 -16.66 -0.13 2.56 16 12 C -0.23 -2.17 11.11 -39.23 -0.44 -2.61 16 13 C -0.01 -0.07 7.48 -35.36 -0.26 -0.34 16 14 C -0.08 -0.21 10.45 36.01 0.38 0.16 16 15 O 0.10 1.03 11.19 17.06 0.19 1.22 16 16 N -0.41 -5.13 11.54 30.38 0.35 -4.78 16 17 C 0.10 1.29 6.34 -3.70 -0.02 1.27 16 18 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 19 C 0.18 3.36 2.19 -67.89 -0.15 3.21 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -16.90 4.33 -53.38 -0.23 -17.13 16 22 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 26 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.62 7.22 -51.93 -0.37 1.25 16 35 H 0.09 1.40 5.73 -51.93 -0.30 1.10 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 1.16 7.69 -51.93 -0.40 0.76 16 38 H 0.10 1.04 7.94 -51.93 -0.41 0.63 16 39 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 47 H 0.38 9.80 7.51 -40.82 -0.31 9.50 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -32.97 391.33 -7.62 -40.59 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.49 Total: 7.57 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.93 Total: -0.58 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.33 Total: -57.52 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.41 Total: -12.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.97 -7.62 -40.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037865940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.432 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds