Wall clock time and date at job start Tue Mar 31 2020 20:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47053 * 2 1 4 4 H 1.09005 * 109.49470 * 54.93493 * 3 2 1 5 5 C 1.52760 * 109.59254 * 294.98319 * 3 2 1 6 6 N 1.46928 * 109.00721 * 185.53762 * 5 3 2 7 7 C 1.34774 * 120.63231 * 233.58277 * 6 5 3 8 8 O 1.21287 * 119.99601 * 359.72246 * 7 6 5 9 9 C 1.50693 * 120.00566 * 179.71865 * 7 6 5 10 10 O 1.42893 * 109.47500 * 179.97438 * 9 7 6 11 11 C 1.35715 * 117.00103 * 179.97438 * 10 9 7 12 12 C 1.41929 * 126.87834 * 179.97438 * 11 10 9 13 13 C 1.35269 * 103.95905 * 179.97438 * 12 11 10 14 14 C 1.50703 * 126.70625 * 180.02562 * 13 12 11 15 15 O 1.34078 * 106.58280 * 0.02562 * 13 12 11 16 16 N 1.20915 * 111.71687 * 359.72731 * 15 13 12 17 17 C 1.46924 * 118.74033 * 53.30349 * 6 5 3 18 18 C 1.53195 * 108.77867 * 306.64791 * 17 6 5 19 19 C 1.53038 * 109.31277 * 54.63132 * 18 17 6 20 20 H 1.08998 * 109.45962 * 178.61987 * 19 18 17 21 21 N 1.46506 * 109.45970 * 58.64246 * 19 18 17 22 22 C 1.36936 * 119.99813 * 85.00469 * 21 19 18 23 23 H 1.08001 * 119.99865 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99799 * 180.02562 * 22 21 19 25 25 N 1.31612 * 120.00075 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99805 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46792 * 89.99642 * 26 24 22 28 28 H 1.48494 * 109.46985 * 209.99792 * 26 24 22 29 29 H 1.48504 * 109.47150 * 329.99713 * 26 24 22 30 30 H 1.09007 * 109.47051 * 59.99443 * 1 2 3 31 31 H 1.08994 * 109.47531 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47564 * 299.99954 * 1 2 3 33 33 H 1.08998 * 109.47095 * 240.00223 * 2 1 3 34 34 H 1.08997 * 109.46864 * 120.00020 * 2 1 3 35 35 H 1.08993 * 109.50865 * 65.65550 * 5 3 2 36 36 H 1.08998 * 109.42857 * 305.36593 * 5 3 2 37 37 H 1.08998 * 109.47280 * 59.99824 * 9 7 6 38 38 H 1.09004 * 109.47115 * 300.00570 * 9 7 6 39 39 H 1.08002 * 128.02302 * 359.96501 * 12 11 10 40 40 H 1.09006 * 109.46758 * 90.00972 * 14 13 12 41 41 H 1.08997 * 109.46959 * 209.99901 * 14 13 12 42 42 H 1.08997 * 109.47828 * 330.00629 * 14 13 12 43 43 H 1.09011 * 109.58376 * 66.43114 * 17 6 5 44 44 H 1.08991 * 109.59249 * 186.85440 * 17 6 5 45 45 H 1.08999 * 109.49867 * 174.58453 * 18 17 6 46 46 H 1.08998 * 109.49480 * 294.64808 * 18 17 6 47 47 H 0.97002 * 119.99746 * 265.00062 * 21 19 18 48 48 H 0.97000 * 120.00426 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8411 5 6 1.6377 2.1281 -1.3045 6 7 2.2450 3.4652 -1.3495 7 6 1.4856 4.5575 -1.5654 8 8 0.2895 4.4416 -1.7298 9 6 2.1224 5.9228 -1.6024 10 8 1.1185 6.9103 -1.8448 11 6 1.5279 8.2026 -1.9078 12 6 0.7152 9.3434 -2.1371 13 6 1.5873 10.3769 -2.1063 14 6 1.2615 11.8364 -2.2932 15 8 2.7983 9.8490 -1.8769 16 7 2.7481 8.6462 -1.7646 17 6 3.6951 3.5896 -1.1484 18 6 4.0736 2.8882 0.1598 19 6 3.5652 1.4451 0.1258 20 1 3.8546 0.9364 1.0454 21 7 4.1505 0.7483 -1.0224 22 6 5.3878 0.1713 -0.9152 23 1 5.9322 0.2303 0.0157 24 6 5.9426 -0.4884 -2.0033 25 7 5.2792 -0.5597 -3.1377 26 14 7.6307 -1.2749 -1.8572 27 1 7.4843 -2.6789 -1.3962 28 1 8.3017 -1.2561 -3.1818 29 1 8.4478 -0.5147 -0.8775 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5524 2.2181 -1.3487 36 1 1.9923 1.5372 -2.1490 37 1 2.8644 5.9561 -2.4002 38 1 2.6071 6.1237 -0.6470 39 1 -0.3521 9.3782 -2.2989 40 1 1.0333 12.2844 -1.3261 41 1 2.1170 12.3457 -2.7367 42 1 0.3986 11.9347 -2.9518 43 1 4.2209 3.1202 -1.9801 44 1 3.9669 4.6435 -1.0899 45 1 5.1577 2.8894 0.2729 46 1 3.6196 3.4146 0.9994 47 1 3.6616 0.6957 -1.8585 48 1 5.6667 -1.0210 -3.8980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037865943.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:31 Heat of formation + Delta-G solvation = 3.736337 kcal Electronic energy + Delta-G solvation = -29794.031481 eV Core-core repulsion = 25660.428289 eV Total energy + Delta-G solvation = -4133.603193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.11940 -40.35398 -38.95803 -37.60503 -34.55077 -34.12281 -33.79294 -32.75344 -31.75283 -29.80610 -29.31789 -28.28895 -27.73193 -24.82257 -23.85094 -23.63768 -23.51456 -21.63534 -20.85354 -19.71199 -18.45233 -18.09059 -18.04503 -17.40495 -17.06699 -16.59564 -16.27548 -15.83530 -14.92184 -14.65957 -14.49397 -14.21479 -14.10821 -14.03012 -13.80861 -13.66237 -13.37029 -13.31068 -13.08067 -12.96779 -12.80073 -12.54816 -12.28824 -11.88423 -11.79009 -11.42629 -11.32713 -11.12671 -11.00946 -10.85047 -10.76659 -10.34672 -10.30461 -10.19980 -9.83140 -9.78836 -9.65378 -9.58627 -9.40491 -8.96354 -8.34087 -7.01813 -5.82373 -3.11139 1.15608 2.05100 2.20953 2.62125 2.83650 3.36428 3.39476 3.45281 3.46701 3.96393 4.40488 4.50005 4.54457 4.66845 4.88193 4.90597 4.94760 4.96644 5.06842 5.22530 5.23272 5.29058 5.36197 5.42178 5.48684 5.55334 5.61197 5.66929 5.75121 5.77191 5.87737 6.03755 6.11412 6.12971 6.29921 6.33058 6.37924 6.50774 6.55474 6.66015 6.70956 6.79694 6.89448 6.95965 7.53913 7.65573 8.01444 8.21270 8.35908 9.47729 10.03682 10.38815 11.39928 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.002646 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.230789 B =10578.243764 C =12017.645296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.066 0.934 5 C 0.120 3.880 6 N -0.595 5.595 7 C 0.517 3.483 8 O -0.532 6.532 9 C 0.048 3.952 10 O -0.257 6.257 11 C 0.214 3.786 12 C -0.233 4.233 13 C -0.011 4.011 14 C -0.074 4.074 15 O 0.099 5.901 16 N -0.410 5.410 17 C 0.109 3.891 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.178 0.822 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.049 0.951 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 20.245 4.072 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.085 0.915 5 C -0.001 4.001 6 N -0.328 5.328 7 C 0.303 3.697 8 O -0.409 6.409 9 C -0.031 4.031 10 O -0.162 6.162 11 C 0.016 3.984 12 C -0.255 4.255 13 C -0.075 4.075 14 C -0.132 4.132 15 O 0.038 5.962 16 N -0.138 5.138 17 C -0.013 4.013 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.196 0.804 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.536 19.373 4.217 21.586 hybrid contribution 0.402 -0.494 -0.331 0.718 sum -8.134 18.879 3.886 20.921 Atomic orbital electron populations 1.21861 0.96780 1.01098 1.01380 1.21413 0.94296 0.95567 1.03463 1.21688 0.97457 0.96267 0.96976 0.91527 1.21655 0.98871 0.80940 0.98646 1.48023 1.08770 1.06233 1.69806 1.19766 0.87041 0.85073 0.77817 1.90712 1.14447 1.86197 1.49508 1.22562 0.90288 0.86336 1.03898 1.86272 1.33248 1.09641 1.87042 1.22075 0.89556 0.87275 0.99493 1.21797 1.02260 0.88210 1.13209 1.24349 0.84375 0.98169 1.00623 1.20374 1.03536 0.85249 1.04008 1.84797 1.29662 1.14218 1.67480 1.74189 1.19670 0.92684 1.27228 1.21843 0.78852 1.00017 1.00628 1.22536 1.02045 0.99372 0.95172 1.20226 0.89683 0.90570 0.92758 0.92937 1.42479 1.19167 1.63957 1.10485 1.19210 0.93611 1.27081 0.97047 0.91231 1.24706 0.98571 1.01441 0.96000 1.69641 1.38182 1.47967 1.02212 0.86239 0.84188 0.79362 0.76657 1.21810 1.21890 1.20846 0.92779 0.93096 0.93356 0.90426 0.91924 0.89407 0.90409 0.88566 0.88650 0.80422 0.89119 0.89528 0.88802 0.89133 0.91433 0.90468 0.93227 0.78096 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.10 -1.67 2.12 -90.72 -0.19 -1.86 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C 0.12 2.03 5.01 -3.93 -0.02 2.01 16 6 N -0.59 -9.68 2.98 -173.03 -0.52 -10.20 16 7 C 0.52 8.67 7.77 -10.99 -0.09 8.58 16 8 O -0.53 -10.58 15.91 -14.36 -0.23 -10.81 16 9 C 0.05 0.68 4.49 36.00 0.16 0.84 16 10 O -0.26 -3.95 9.74 -38.76 -0.38 -4.33 16 11 C 0.21 2.87 8.01 -16.66 -0.13 2.74 16 12 C -0.23 -2.32 11.10 -39.23 -0.44 -2.76 16 13 C -0.01 -0.09 7.48 -35.36 -0.26 -0.36 16 14 C -0.07 -0.25 10.45 36.01 0.38 0.13 16 15 O 0.10 1.09 11.19 17.08 0.19 1.28 16 16 N -0.41 -5.45 11.54 30.38 0.35 -5.10 16 17 C 0.11 1.70 6.09 -3.71 -0.02 1.68 16 18 C -0.15 -2.41 5.78 -26.61 -0.15 -2.57 16 19 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 20 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 21 N -0.72 -16.14 3.72 -53.38 -0.20 -16.34 16 22 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 26 Si 0.90 21.64 29.55 -169.99 -5.02 16.61 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 30 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.50 5.72 -51.93 -0.30 1.20 16 36 H 0.08 1.45 6.64 -51.93 -0.34 1.10 16 37 H 0.10 1.27 7.94 -51.93 -0.41 0.86 16 38 H 0.10 1.21 7.69 -51.93 -0.40 0.81 16 39 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 43 H 0.09 1.66 7.74 -51.92 -0.40 1.25 16 44 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.38 9.28 5.95 -40.82 -0.24 9.04 16 48 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -31.89 387.71 -7.55 -39.44 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.35 Total: 8.46 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.97 Total: 1.24 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.36 Total: -57.73 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.41 Total: -13.86 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.89 -7.55 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037865943.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.177 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds