Wall clock time and date at job start Tue Mar 31 2020 20:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 H 1.09007 * 109.52053 * 305.07828 * 3 2 1 5 5 C 1.53617 * 109.43173 * 65.28661 * 3 2 1 6 6 N 1.46932 * 108.54282 * 174.72715 * 5 3 2 7 7 C 1.34771 * 120.63307 * 126.37042 * 6 5 3 8 8 O 1.21282 * 120.00030 * 359.71619 * 7 6 5 9 9 C 1.50700 * 120.00293 * 179.72265 * 7 6 5 10 10 O 1.42896 * 109.47618 * 179.97438 * 9 7 6 11 11 C 1.35704 * 117.00419 * 180.02562 * 10 9 7 12 12 C 1.41932 * 126.88154 * 180.30429 * 11 10 9 13 13 C 1.35274 * 103.95774 * 180.11401 * 12 11 10 14 14 C 1.50703 * 126.70598 * 179.87640 * 13 12 11 15 15 O 1.34073 * 106.58375 * 359.61085 * 13 12 11 16 16 N 1.20920 * 111.72071 * 0.26507 * 15 13 12 17 17 C 1.46925 * 118.73629 * 306.09319 * 6 5 3 18 18 C 1.53198 * 108.77530 * 53.85665 * 17 6 5 19 19 C 1.53031 * 109.31675 * 305.36784 * 18 17 6 20 20 H 1.08995 * 109.46475 * 181.38656 * 19 18 17 21 21 N 1.46502 * 109.46035 * 301.34764 * 19 18 17 22 22 C 1.36946 * 119.99454 * 274.99790 * 21 19 18 23 23 H 1.07998 * 119.99903 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00156 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00150 * 180.02562 * 24 22 21 26 26 Si 1.86809 * 119.99442 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.46904 * 90.00246 * 26 24 22 28 28 H 1.48507 * 109.46657 * 209.99892 * 26 24 22 29 29 H 1.48500 * 109.47387 * 329.99847 * 26 24 22 30 30 H 1.09003 * 109.46967 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47729 * 300.00226 * 1 2 3 32 32 H 1.09004 * 109.47067 * 60.00569 * 1 2 3 33 33 H 1.08999 * 109.47033 * 239.99967 * 2 1 3 34 34 H 1.09004 * 109.47067 * 119.99431 * 2 1 3 35 35 H 1.09002 * 109.74457 * 54.99084 * 5 3 2 36 36 H 1.09003 * 109.66418 * 294.41729 * 5 3 2 37 37 H 1.09006 * 109.47113 * 59.99061 * 9 7 6 38 38 H 1.09005 * 109.46842 * 299.99874 * 9 7 6 39 39 H 1.07994 * 128.02004 * 0.02562 * 12 11 10 40 40 H 1.09002 * 109.47152 * 179.70870 * 14 13 12 41 41 H 1.09001 * 109.46980 * 59.70970 * 14 13 12 42 42 H 1.09004 * 109.47113 * 299.70951 * 14 13 12 43 43 H 1.08996 * 109.58873 * 173.64634 * 17 6 5 44 44 H 1.09008 * 109.58874 * 293.93302 * 17 6 5 45 45 H 1.09001 * 109.49473 * 65.32241 * 18 17 6 46 46 H 1.08997 * 109.49549 * 185.41420 * 18 17 6 47 47 H 0.96995 * 120.00852 * 94.99879 * 21 19 18 48 48 H 0.97003 * 119.99824 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8408 5 6 1.6393 2.1262 1.3160 6 7 2.2450 3.4645 1.3506 7 6 1.4857 4.5565 1.5680 8 8 0.2896 4.4406 1.7323 9 6 2.1227 5.9217 1.6068 10 8 1.1187 6.9092 1.8495 11 6 1.5282 8.2013 1.9140 12 6 0.7163 9.3415 2.1493 13 6 1.5880 10.3754 2.1156 14 6 1.2624 11.8346 2.3044 15 8 2.7991 9.8475 1.8872 16 7 2.7495 8.6442 1.7780 17 6 3.6951 3.5889 1.1497 18 6 4.0736 2.8881 -0.1589 19 6 3.5652 1.4451 -0.1258 20 1 3.8546 0.9369 -1.0455 21 7 4.1506 0.7476 1.0219 22 6 5.3879 0.1707 0.9141 23 1 5.9322 0.2303 -0.0168 24 6 5.9429 -0.4898 2.0016 25 7 7.1322 -1.0438 1.8982 26 14 5.0015 -0.5921 3.6119 27 1 4.1586 -1.8146 3.6156 28 1 5.9615 -0.6493 4.7436 29 1 4.1365 0.6062 3.7567 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 2.0007 1.5397 2.1606 36 1 0.5541 2.2149 1.3677 37 1 2.6074 6.1238 0.6516 38 1 2.8647 5.9538 2.4047 39 1 -0.3502 9.3758 2.3152 40 1 2.1763 12.4238 2.2271 41 1 0.8165 11.9831 3.2879 42 1 0.5590 12.1525 1.5348 43 1 3.9669 4.6429 1.0917 44 1 4.2208 3.1213 1.9823 45 1 3.6192 3.4148 -0.9982 46 1 5.1577 2.8894 -0.2719 47 1 3.6619 0.6944 1.8580 48 1 7.5199 -1.5056 2.6581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037865946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:34 Heat of formation + Delta-G solvation = 7.998925 kcal Electronic energy + Delta-G solvation = -29915.307060 eV Core-core repulsion = 25781.888707 eV Total energy + Delta-G solvation = -4133.418353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.16668 -40.47935 -39.05692 -37.74279 -34.69930 -34.16467 -33.90546 -32.80821 -31.83624 -29.98346 -29.77341 -28.40126 -27.88425 -25.01456 -23.99840 -23.68535 -23.19477 -21.70143 -20.93988 -19.83004 -18.51501 -18.21476 -18.11940 -17.86258 -17.15251 -16.71356 -16.35689 -15.95503 -15.08926 -14.72304 -14.52675 -14.43332 -14.22058 -14.01846 -13.81904 -13.71653 -13.55652 -13.35372 -13.24397 -13.06073 -12.83797 -12.54043 -12.49916 -12.01714 -11.94653 -11.64498 -11.39364 -11.32494 -11.14913 -11.01635 -10.88189 -10.45615 -10.41987 -10.26101 -9.87896 -9.82931 -9.77997 -9.60330 -9.46312 -9.00794 -8.49786 -7.33823 -5.83307 -3.18997 1.11002 1.99717 2.12212 2.49807 2.78995 3.24736 3.30045 3.33340 3.40500 3.90782 4.29597 4.45744 4.52078 4.62513 4.80828 4.82786 4.86836 4.93105 4.93453 5.04269 5.13518 5.18651 5.25283 5.31801 5.32450 5.48392 5.51144 5.55740 5.57738 5.58853 5.71457 5.81604 5.96502 5.98603 6.12877 6.20690 6.26277 6.35959 6.42373 6.48845 6.60089 6.70557 6.71437 6.82034 7.38908 7.92699 7.96202 8.08455 8.35670 9.13543 9.86126 10.05604 11.35005 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.002766 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.362279 B =10121.589554 C =11147.987130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.073 0.927 5 C 0.119 3.881 6 N -0.598 5.598 7 C 0.518 3.482 8 O -0.530 6.530 9 C 0.047 3.953 10 O -0.257 6.257 11 C 0.214 3.786 12 C -0.234 4.234 13 C -0.010 4.010 14 C -0.075 4.075 15 O 0.099 5.901 16 N -0.410 5.410 17 C 0.107 3.893 18 C -0.150 4.150 19 C 0.184 3.816 20 H 0.063 0.937 21 N -0.744 5.744 22 C -0.242 4.242 23 H 0.091 0.909 24 C 0.008 3.992 25 N -0.932 5.932 26 Si 0.878 3.122 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.178 0.822 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.082 0.918 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 21.563 -1.690 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.092 0.908 5 C -0.003 4.003 6 N -0.332 5.332 7 C 0.304 3.696 8 O -0.406 6.406 9 C -0.031 4.031 10 O -0.162 6.162 11 C 0.016 3.984 12 C -0.256 4.256 13 C -0.074 4.074 14 C -0.132 4.132 15 O 0.039 5.961 16 N -0.137 5.137 17 C -0.015 4.015 18 C -0.191 4.191 19 C 0.074 3.926 20 H 0.081 0.919 21 N -0.387 5.387 22 C -0.371 4.371 23 H 0.109 0.891 24 C -0.188 4.188 25 N -0.580 5.580 26 Si 0.708 3.292 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.196 0.804 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.194 0.806 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.657 20.669 -1.873 24.309 hybrid contribution -0.958 -0.168 1.371 1.681 sum -13.615 20.501 -0.502 24.615 Atomic orbital electron populations 1.21866 0.96566 1.01247 1.01517 1.21432 0.94530 0.95549 1.03391 1.21899 0.97472 0.96315 0.96987 0.90828 1.21838 0.99215 0.80999 0.98245 1.48053 1.08905 1.06171 1.70091 1.19794 0.87040 0.85106 0.77647 1.90716 1.14417 1.86186 1.49313 1.22558 0.90296 0.86261 1.04007 1.86265 1.33176 1.09694 1.87097 1.22067 0.89547 0.87218 0.99598 1.21782 1.02348 0.88227 1.13208 1.24355 0.84374 0.98189 1.00472 1.20385 1.03585 0.85220 1.04039 1.84806 1.29686 1.14164 1.67430 1.74194 1.19567 0.92724 1.27263 1.21863 0.78669 1.00422 1.00541 1.22508 1.02543 0.98868 0.95136 1.20196 0.89373 0.90620 0.92385 0.91949 1.42850 1.19849 1.65765 1.10263 1.19047 0.92153 1.26736 0.99206 0.89121 1.24637 0.96442 1.00260 0.97498 1.69685 1.16261 1.41099 1.30916 0.86677 0.79422 0.77817 0.85260 1.21014 1.21744 1.20551 0.92970 0.92858 0.93075 0.91375 0.91117 0.91245 0.89042 0.88499 0.88556 0.80413 0.89571 0.88875 0.88872 0.91034 0.89670 0.92788 0.89914 0.80608 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.68 37.16 0.36 -1.58 16 2 C -0.11 -1.62 5.19 -26.73 -0.14 -1.76 16 3 C -0.11 -1.60 2.15 -90.28 -0.19 -1.80 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 1.87 5.05 -3.49 -0.02 1.85 16 6 N -0.60 -9.18 2.97 -172.50 -0.51 -9.69 16 7 C 0.52 8.23 7.78 -10.99 -0.09 8.14 16 8 O -0.53 -10.06 15.91 -14.35 -0.23 -10.29 16 9 C 0.05 0.64 4.49 36.01 0.16 0.80 16 10 O -0.26 -3.80 9.74 -38.73 -0.38 -4.18 16 11 C 0.21 2.76 8.01 -16.65 -0.13 2.63 16 12 C -0.23 -2.24 11.11 -39.22 -0.44 -2.68 16 13 C -0.01 -0.08 7.48 -35.36 -0.26 -0.34 16 14 C -0.07 -0.23 10.45 36.01 0.38 0.15 16 15 O 0.10 1.06 11.19 17.09 0.19 1.25 16 16 N -0.41 -5.28 11.54 30.38 0.35 -4.93 16 17 C 0.11 1.58 6.08 -3.71 -0.02 1.56 16 18 C -0.15 -2.30 5.78 -26.61 -0.15 -2.45 16 19 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 20 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 21 N -0.74 -15.79 3.53 -53.39 -0.19 -15.98 16 22 C -0.24 -6.29 10.41 -15.05 -0.16 -6.45 16 23 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 24 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 25 N -0.93 -28.28 13.97 55.49 0.78 -27.50 16 26 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 35 H 0.07 1.18 6.63 -51.93 -0.34 0.83 16 36 H 0.09 1.45 5.73 -51.93 -0.30 1.15 16 37 H 0.10 1.16 7.69 -51.93 -0.40 0.76 16 38 H 0.10 1.20 7.94 -51.93 -0.41 0.78 16 39 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 44 H 0.09 1.44 7.75 -51.92 -0.40 1.04 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 47 H 0.36 7.72 3.80 -40.82 -0.15 7.57 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -33.15 384.64 -7.18 -40.34 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.31 Total: 7.31 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.97 Total: 1.20 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.43 Total: -58.10 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.41 Total: -13.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.15 -7.18 -40.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037865946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.337 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds