Wall clock time and date at job start Tue Mar 31 2020 20:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47153 * 2 1 4 4 H 1.09001 * 109.49507 * 304.92775 * 3 2 1 5 5 C 1.53185 * 109.50388 * 64.99852 * 3 2 1 6 6 N 1.46918 * 108.77972 * 174.58709 * 5 3 2 7 7 C 1.34783 * 120.63432 * 126.36854 * 6 5 3 8 8 O 1.21279 * 119.99733 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00113 * 179.97438 * 7 6 5 10 10 O 1.42901 * 109.46874 * 179.97438 * 9 7 6 11 11 C 1.35710 * 116.99588 * 180.02562 * 10 9 7 12 12 C 1.41939 * 126.87581 * 179.97438 * 11 10 9 13 13 C 1.35271 * 103.95742 * 179.97438 * 12 11 10 14 14 C 1.50703 * 126.70585 * 179.97438 * 13 12 11 15 15 O 1.34078 * 106.58487 * 0.24676 * 13 12 11 16 16 N 1.20924 * 111.71748 * 359.55822 * 15 13 12 17 17 C 1.46934 * 118.73837 * 306.63924 * 6 5 3 18 18 C 1.52761 * 109.00336 * 53.31311 * 17 6 5 19 19 C 1.53043 * 109.38298 * 305.58592 * 18 17 6 20 20 H 1.08996 * 109.44800 * 301.22438 * 19 18 17 21 21 N 1.46505 * 109.45997 * 181.26314 * 19 18 17 22 22 C 1.36932 * 120.00042 * 84.93081 * 21 19 18 23 23 H 1.07998 * 120.00029 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00038 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00196 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00173 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47081 * 89.99994 * 26 24 22 28 28 H 1.48497 * 109.47400 * 209.99886 * 26 24 22 29 29 H 1.48500 * 109.46999 * 330.00343 * 26 24 22 30 30 H 1.08997 * 109.46661 * 300.00611 * 1 2 3 31 31 H 1.08998 * 109.46837 * 60.00162 * 1 2 3 32 32 H 1.08999 * 109.46837 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47114 * 239.99263 * 2 1 3 34 34 H 1.08998 * 109.46837 * 119.99837 * 2 1 3 35 35 H 1.09009 * 109.58583 * 54.79805 * 5 3 2 36 36 H 1.09007 * 109.58574 * 294.37772 * 5 3 2 37 37 H 1.09004 * 109.46948 * 60.00253 * 9 7 6 38 38 H 1.08999 * 109.47600 * 300.00476 * 9 7 6 39 39 H 1.07993 * 128.01980 * 0.02614 * 12 11 10 40 40 H 1.09002 * 109.47152 * 90.00418 * 14 13 12 41 41 H 1.09001 * 109.46980 * 330.00519 * 14 13 12 42 42 H 1.09004 * 109.47113 * 210.00500 * 14 13 12 43 43 H 1.08998 * 109.58415 * 173.13968 * 17 6 5 44 44 H 1.08994 * 109.58702 * 293.57154 * 17 6 5 45 45 H 1.08996 * 109.56430 * 185.55296 * 18 17 6 46 46 H 1.09003 * 109.39148 * 65.50897 * 18 17 6 47 47 H 0.97003 * 119.99705 * 264.93309 * 21 19 18 48 48 H 0.96992 * 120.00264 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6067 1.9815 -0.8424 5 6 1.6352 2.1281 1.3086 6 7 2.2416 3.4656 1.3492 7 6 1.4816 4.5581 1.5626 8 8 0.2852 4.4424 1.7239 9 6 2.1187 5.9232 1.6019 10 8 1.1139 6.9110 1.8398 11 6 1.5234 8.2033 1.9041 12 6 0.7098 9.3444 2.1287 13 6 1.5826 10.3776 2.1029 14 6 1.2563 11.8372 2.2879 15 8 2.7938 9.8498 1.8745 16 7 2.7452 8.6459 1.7722 17 6 3.6916 3.5904 1.1466 18 6 4.0742 2.8879 -0.1549 19 6 3.5657 1.4448 -0.1217 20 1 3.9990 0.9269 0.7339 21 7 3.9579 0.7606 -1.3563 22 6 5.1963 0.1847 -1.4562 23 1 5.8836 0.2346 -0.6247 24 6 5.5677 -0.4641 -2.6258 25 7 4.7298 -0.5253 -3.6390 26 14 7.2573 -1.2490 -2.7623 27 1 7.1878 -2.6575 -2.2969 28 1 7.7051 -1.2170 -4.1778 29 1 8.2221 -0.4966 -1.9208 30 1 -0.3632 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9909 1.5398 2.1546 36 1 0.5497 2.2174 1.3537 37 1 2.6065 6.1241 0.6481 38 1 2.8580 5.9563 2.4022 39 1 -0.3582 9.3796 2.2849 40 1 1.3216 12.0929 3.3455 41 1 0.2458 12.0320 1.9287 42 1 1.9656 12.4425 1.7233 43 1 3.9625 4.6443 1.0845 44 1 4.2183 3.1238 1.9790 45 1 5.1586 2.8890 -0.2650 46 1 3.6225 3.4135 -0.9962 47 1 3.3404 0.7155 -2.1030 48 1 4.9895 -0.9783 -4.4564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037865949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:37 Heat of formation + Delta-G solvation = 1.806987 kcal Electronic energy + Delta-G solvation = -29388.599418 eV Core-core repulsion = 25254.912563 eV Total energy + Delta-G solvation = -4133.686856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.17664 -40.46014 -38.99322 -37.63664 -34.85123 -34.17946 -33.83691 -32.81706 -31.79447 -29.89123 -29.56280 -28.35138 -27.74980 -24.93523 -23.90711 -23.69788 -22.86879 -21.66834 -20.88538 -19.93679 -19.11869 -18.26309 -18.13602 -17.21602 -17.10254 -16.79259 -16.37248 -15.97122 -15.04845 -14.72007 -14.61616 -14.25431 -14.06638 -13.96766 -13.78280 -13.69757 -13.45087 -13.35294 -13.11766 -13.04633 -12.84960 -12.73907 -12.19216 -11.94105 -11.86386 -11.68376 -11.39161 -11.32857 -10.97010 -10.88995 -10.74884 -10.39996 -10.23952 -10.18747 -9.87514 -9.84447 -9.72993 -9.64333 -9.47789 -8.94154 -8.59923 -7.00651 -5.80951 -3.10015 1.09961 1.98547 2.09484 2.46279 2.77371 3.20396 3.39977 3.45380 3.47075 3.89371 4.25119 4.43754 4.54198 4.60614 4.78023 4.80340 4.85994 4.92788 4.95674 5.16487 5.18169 5.19102 5.28498 5.31313 5.39232 5.50556 5.56381 5.56790 5.63254 5.64213 5.84099 5.95501 6.07276 6.11142 6.26151 6.30017 6.34013 6.41492 6.47264 6.62045 6.70992 6.77781 6.91778 7.00231 7.32434 7.65233 7.94494 8.04807 8.37009 9.48615 10.05423 10.40340 11.41351 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.002378 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.094526 B =11769.996176 C =13186.769718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.121 3.879 6 N -0.600 5.600 7 C 0.519 3.481 8 O -0.527 6.527 9 C 0.047 3.953 10 O -0.257 6.257 11 C 0.214 3.786 12 C -0.233 4.233 13 C -0.010 4.010 14 C -0.075 4.075 15 O 0.099 5.901 16 N -0.410 5.410 17 C 0.103 3.897 18 C -0.153 4.153 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.179 0.821 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 20.323 13.626 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.001 4.001 6 N -0.334 5.334 7 C 0.305 3.695 8 O -0.403 6.403 9 C -0.032 4.032 10 O -0.162 6.162 11 C 0.016 3.984 12 C -0.255 4.255 13 C -0.074 4.074 14 C -0.132 4.132 15 O 0.039 5.961 16 N -0.138 5.138 17 C -0.020 4.020 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.196 0.804 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.200 19.445 13.522 24.755 hybrid contribution 0.317 -0.445 -0.424 0.691 sum -6.883 19.000 13.099 24.082 Atomic orbital electron populations 1.21850 0.96768 1.01100 1.01336 1.21449 0.94407 0.95537 1.03555 1.21799 0.97700 0.96393 0.96635 0.91113 1.21814 0.99536 0.80675 0.98091 1.48064 1.08634 1.06412 1.70336 1.19799 0.87058 0.85083 0.77563 1.90725 1.14344 1.86125 1.49075 1.22559 0.90279 0.86292 1.04038 1.86273 1.33080 1.09684 1.87163 1.22065 0.89532 0.87203 0.99636 1.21802 1.02280 0.88202 1.13185 1.24357 0.84369 0.98212 1.00426 1.20384 1.03571 0.85209 1.04055 1.84799 1.29764 1.14097 1.67484 1.74185 1.19597 0.92707 1.27300 1.21885 0.79112 1.01142 0.99884 1.22633 1.02469 0.99411 0.94925 1.20184 0.90723 0.90435 0.91370 0.93291 1.42406 1.16529 1.64360 1.12688 1.19202 0.91804 1.27399 0.98624 0.91217 1.24737 0.98171 1.01504 0.96434 1.69655 1.35311 1.48227 1.04724 0.86223 0.84001 0.79320 0.76812 1.21756 1.21837 1.20809 0.93215 0.92961 0.93103 0.89702 0.92388 0.91287 0.88957 0.88424 0.88629 0.80394 0.89084 0.88764 0.89488 0.90725 0.90889 0.90240 0.92113 0.78164 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.78 5.31 -26.73 -0.14 -1.92 16 3 C -0.11 -1.70 1.93 -90.50 -0.17 -1.87 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.74 5.32 -3.72 -0.02 1.72 16 6 N -0.60 -8.43 2.98 -173.03 -0.52 -8.94 16 7 C 0.52 7.83 7.78 -10.98 -0.09 7.75 16 8 O -0.53 -9.73 15.91 -14.35 -0.23 -9.96 16 9 C 0.05 0.60 4.49 36.00 0.16 0.76 16 10 O -0.26 -3.68 9.74 -38.75 -0.38 -4.06 16 11 C 0.21 2.69 8.01 -16.65 -0.13 2.55 16 12 C -0.23 -2.17 11.11 -39.22 -0.44 -2.60 16 13 C -0.01 -0.08 7.48 -35.36 -0.26 -0.34 16 14 C -0.07 -0.21 10.45 36.01 0.38 0.16 16 15 O 0.10 1.02 11.19 17.07 0.19 1.21 16 16 N -0.41 -5.12 11.54 30.38 0.35 -4.77 16 17 C 0.10 1.30 6.31 -3.93 -0.02 1.27 16 18 C -0.15 -2.48 5.64 -26.83 -0.15 -2.63 16 19 C 0.18 3.36 2.20 -67.88 -0.15 3.21 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -16.89 4.33 -53.38 -0.23 -17.13 16 22 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 26 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.62 7.22 -51.93 -0.37 1.25 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.09 1.40 5.72 -51.93 -0.30 1.10 16 37 H 0.10 1.16 7.68 -51.93 -0.40 0.76 16 38 H 0.10 1.04 7.95 -51.93 -0.41 0.63 16 39 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 41 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.38 9.80 7.51 -40.82 -0.31 9.49 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -32.97 391.29 -7.63 -40.59 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.49 Total: 7.56 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.93 Total: -0.59 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.33 Total: -57.52 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.41 Total: -12.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.97 -7.63 -40.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037865949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.398 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds