Wall clock time and date at job start Tue Mar 31 2020 20:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47153 * 2 1 4 4 H 1.09001 * 109.49507 * 304.92775 * 3 2 1 5 5 C 1.53185 * 109.50388 * 64.99852 * 3 2 1 6 6 N 1.46918 * 108.77972 * 174.58709 * 5 3 2 7 7 C 1.34783 * 120.63432 * 126.36854 * 6 5 3 8 8 O 1.21279 * 119.99733 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00113 * 179.97438 * 7 6 5 10 10 O 1.42901 * 109.46874 * 179.97438 * 9 7 6 11 11 C 1.35710 * 116.99588 * 180.02562 * 10 9 7 12 12 C 1.41939 * 126.87581 * 179.97438 * 11 10 9 13 13 C 1.35271 * 103.95742 * 179.97438 * 12 11 10 14 14 C 1.50703 * 126.70585 * 179.97438 * 13 12 11 15 15 O 1.34078 * 106.58487 * 0.24676 * 13 12 11 16 16 N 1.20924 * 111.71748 * 359.55822 * 15 13 12 17 17 C 1.46934 * 118.73837 * 306.63924 * 6 5 3 18 18 C 1.52761 * 109.00336 * 53.31311 * 17 6 5 19 19 C 1.53043 * 109.38298 * 305.58592 * 18 17 6 20 20 H 1.08996 * 109.44800 * 301.22438 * 19 18 17 21 21 N 1.46505 * 109.45997 * 181.26314 * 19 18 17 22 22 C 1.36932 * 120.00042 * 84.93081 * 21 19 18 23 23 H 1.07998 * 120.00029 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00038 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00196 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00173 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47081 * 89.99994 * 26 24 22 28 28 H 1.48497 * 109.47400 * 209.99886 * 26 24 22 29 29 H 1.48500 * 109.46999 * 330.00343 * 26 24 22 30 30 H 1.08997 * 109.46661 * 300.00611 * 1 2 3 31 31 H 1.08998 * 109.46837 * 60.00162 * 1 2 3 32 32 H 1.08999 * 109.46837 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47114 * 239.99263 * 2 1 3 34 34 H 1.08998 * 109.46837 * 119.99837 * 2 1 3 35 35 H 1.09009 * 109.58583 * 54.79805 * 5 3 2 36 36 H 1.09007 * 109.58574 * 294.37772 * 5 3 2 37 37 H 1.09004 * 109.46948 * 60.00253 * 9 7 6 38 38 H 1.08999 * 109.47600 * 300.00476 * 9 7 6 39 39 H 1.07993 * 128.01980 * 0.02614 * 12 11 10 40 40 H 1.09002 * 109.47152 * 90.00418 * 14 13 12 41 41 H 1.09001 * 109.46980 * 330.00519 * 14 13 12 42 42 H 1.09004 * 109.47113 * 210.00500 * 14 13 12 43 43 H 1.08998 * 109.58415 * 173.13968 * 17 6 5 44 44 H 1.08994 * 109.58702 * 293.57154 * 17 6 5 45 45 H 1.08996 * 109.56430 * 185.55296 * 18 17 6 46 46 H 1.09003 * 109.39148 * 65.50897 * 18 17 6 47 47 H 0.97003 * 119.99705 * 264.93309 * 21 19 18 48 48 H 0.96992 * 120.00264 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6067 1.9815 -0.8424 5 6 1.6352 2.1281 1.3086 6 7 2.2416 3.4656 1.3492 7 6 1.4816 4.5581 1.5626 8 8 0.2852 4.4424 1.7239 9 6 2.1187 5.9232 1.6019 10 8 1.1139 6.9110 1.8398 11 6 1.5234 8.2033 1.9041 12 6 0.7098 9.3444 2.1287 13 6 1.5826 10.3776 2.1029 14 6 1.2563 11.8372 2.2879 15 8 2.7938 9.8498 1.8745 16 7 2.7452 8.6459 1.7722 17 6 3.6916 3.5904 1.1466 18 6 4.0742 2.8879 -0.1549 19 6 3.5657 1.4448 -0.1217 20 1 3.9990 0.9269 0.7339 21 7 3.9579 0.7606 -1.3563 22 6 5.1963 0.1847 -1.4562 23 1 5.8836 0.2346 -0.6247 24 6 5.5677 -0.4641 -2.6258 25 7 4.7298 -0.5253 -3.6390 26 14 7.2573 -1.2490 -2.7623 27 1 7.1878 -2.6575 -2.2969 28 1 7.7051 -1.2170 -4.1778 29 1 8.2221 -0.4966 -1.9208 30 1 -0.3632 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9909 1.5398 2.1546 36 1 0.5497 2.2174 1.3537 37 1 2.6065 6.1241 0.6481 38 1 2.8580 5.9563 2.4022 39 1 -0.3582 9.3796 2.2849 40 1 1.3216 12.0929 3.3455 41 1 0.2458 12.0320 1.9287 42 1 1.9656 12.4425 1.7233 43 1 3.9625 4.6443 1.0845 44 1 4.2183 3.1238 1.9790 45 1 5.1586 2.8890 -0.2650 46 1 3.6225 3.4135 -0.9962 47 1 3.3404 0.7155 -2.1030 48 1 4.9895 -0.9783 -4.4564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037865949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:36 Heat of formation + Delta-G solvation = -19.723324 kcal Electronic energy + Delta-G solvation = -29389.533043 eV Core-core repulsion = 25254.912563 eV Total energy + Delta-G solvation = -4134.620480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.95819 -41.64249 -40.07394 -38.93777 -36.30229 -35.39567 -34.78084 -33.58136 -33.50412 -31.18974 -31.00533 -29.28570 -28.54362 -26.52191 -25.17427 -24.50338 -24.45671 -22.55811 -22.24025 -21.24419 -20.34420 -19.18014 -19.00383 -18.93693 -18.09517 -17.83735 -17.39767 -17.10720 -16.76850 -15.95317 -15.71787 -15.63035 -15.44145 -14.91833 -14.83057 -14.74540 -14.57981 -14.40747 -14.09928 -14.04123 -13.89605 -13.62705 -13.24166 -13.20972 -13.06988 -12.92343 -12.85041 -12.70257 -12.55886 -12.17981 -12.13484 -12.10259 -11.85480 -11.61216 -11.54667 -11.12647 -11.10181 -10.81769 -10.52292 -10.29287 -9.82441 -8.97307 -7.91443 -5.19080 0.43762 1.11851 1.18044 1.30118 1.48323 1.48897 1.56990 2.06423 2.30473 2.57353 3.08004 3.19852 3.41665 3.70592 3.74222 3.80537 3.86322 3.90126 3.94753 3.97277 4.01970 4.18155 4.30329 4.36914 4.38255 4.43415 4.60911 4.69299 4.75987 4.77236 4.78693 4.79960 4.84205 4.91058 4.97720 5.00614 5.12974 5.24225 5.27619 5.32268 5.42313 5.50036 5.56397 5.60917 5.79808 6.16859 6.29785 6.86752 7.20777 7.36416 8.12243 8.35324 9.32010 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.002378 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.094526 B =11769.996176 C =13186.769718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.094 4.094 4 H 0.051 0.949 5 C 0.126 3.874 6 N -0.598 5.598 7 C 0.519 3.481 8 O -0.565 6.565 9 C 0.052 3.948 10 O -0.279 6.279 11 C 0.188 3.812 12 C -0.250 4.250 13 C 0.010 3.990 14 C -0.074 4.074 15 O 0.092 5.908 16 N -0.432 5.432 17 C 0.110 3.890 18 C -0.144 4.144 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.731 5.731 22 C -0.228 4.228 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.268 1.268 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.197 0.803 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 22.386 15.901 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.114 4.114 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.331 5.331 7 C 0.306 3.694 8 O -0.444 6.444 9 C -0.027 4.027 10 O -0.185 6.185 11 C -0.009 4.009 12 C -0.271 4.271 13 C -0.054 4.054 14 C -0.131 4.131 15 O 0.032 5.968 16 N -0.160 5.160 17 C -0.013 4.013 18 C -0.185 4.185 19 C 0.070 3.930 20 H 0.071 0.929 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.218 1.218 28 H -0.229 1.229 29 H -0.192 1.192 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.214 0.786 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.202 0.798 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.728 21.543 15.853 27.580 hybrid contribution 0.134 -0.974 -1.073 1.456 sum -6.594 20.568 14.780 26.172 Atomic orbital electron populations 1.21788 0.94977 1.01958 1.01664 1.21353 0.95973 0.95019 1.02125 1.21645 0.95983 0.96599 0.97164 0.93074 1.21730 0.99436 0.81051 0.97352 1.48107 1.09161 1.06111 1.69713 1.20195 0.86582 0.85970 0.76612 1.90704 1.16017 1.86721 1.50918 1.22549 0.90126 0.84778 1.05198 1.86222 1.33974 1.10687 1.87651 1.22474 0.90545 0.87044 1.00821 1.22174 1.03389 0.87522 1.14060 1.25165 0.82735 0.99866 0.97620 1.20685 1.04948 0.81899 1.05590 1.84750 1.31133 1.13469 1.67471 1.74158 1.19913 0.93716 1.28196 1.21938 0.78273 1.02625 0.98416 1.22424 1.01682 0.97846 0.96585 1.20431 0.92214 0.91210 0.89192 0.92946 1.42586 1.15539 1.64907 1.13912 1.19593 0.92572 1.25551 0.98309 0.90295 1.25496 1.01590 1.03304 0.96624 1.69819 1.37134 1.50087 1.05157 0.85221 0.80450 0.78383 0.76206 1.21780 1.22851 1.19246 0.91737 0.93733 0.92017 0.93386 0.91417 0.89242 0.89424 0.87675 0.86535 0.78625 0.87162 0.86835 0.88181 0.88065 0.88513 0.90963 0.93717 0.79812 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.67 71.98 0.70 -3.29 16 2 C -0.11 -3.41 5.31 30.59 0.16 -3.25 16 3 C -0.09 -3.02 1.93 -10.72 -0.02 -3.04 16 4 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.13 3.47 5.32 86.36 0.46 3.93 16 6 N -0.60 -15.78 2.98 -819.74 -2.44 -18.22 16 7 C 0.52 15.10 7.78 87.65 0.68 15.79 16 8 O -0.56 -20.70 15.91 16.01 0.25 -20.44 16 9 C 0.05 1.25 4.49 71.23 0.32 1.57 16 10 O -0.28 -7.89 9.74 -71.27 -0.69 -8.59 16 11 C 0.19 4.61 8.01 85.79 0.69 5.30 16 12 C -0.25 -4.31 11.11 22.50 0.25 -4.06 16 13 C 0.01 0.13 7.48 25.00 0.19 0.31 16 14 C -0.07 -0.17 10.45 71.24 0.74 0.57 16 15 O 0.09 1.77 11.19 71.27 0.80 2.57 16 16 N -0.43 -10.39 11.54 -172.59 -1.99 -12.38 16 17 C 0.11 2.50 6.31 86.22 0.54 3.04 16 18 C -0.14 -4.53 5.64 30.53 0.17 -4.36 16 19 C 0.18 6.46 2.20 45.02 0.10 6.56 16 20 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 21 N -0.73 -34.93 4.33 -322.80 -1.40 -36.33 16 22 C -0.23 -12.06 9.93 84.03 0.83 -11.22 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 25 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 26 Si 0.97 45.43 29.55 68.60 2.03 47.45 16 27 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 29 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 30 H 0.06 1.57 6.70 -2.39 -0.02 1.55 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.90 7.22 -2.39 -0.02 1.88 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.09 2.56 5.72 -2.38 -0.01 2.54 16 37 H 0.11 2.37 7.68 -2.39 -0.02 2.35 16 38 H 0.12 2.30 7.95 -2.39 -0.02 2.28 16 39 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.10 0.04 8.14 -2.38 -0.02 0.02 16 43 H 0.10 1.84 5.93 -2.39 -0.01 1.82 16 44 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.37 19.66 7.51 -92.71 -0.70 18.97 16 48 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -73.84 391.29 3.40 -70.44 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.28 Total: 30.19 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 6.28 Total: 3.91 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -5.55 Total: -125.53 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: 0.36 Total: -26.46 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -73.84 3.40 -70.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037865949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.718 kcal (2) G-P(sol) polarization free energy of solvation -73.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds