Wall clock time and date at job start Tue Mar 31 2020 20:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42906 * 109.47048 * 2 1 4 4 C 1.35733 * 117.00087 * 179.97438 * 3 2 1 5 5 C 1.41852 * 126.78322 * 179.70956 * 4 3 2 6 6 C 1.36663 * 103.80917 * 179.86199 * 5 4 3 7 7 C 1.47547 * 126.88308 * 180.13190 * 6 5 4 8 8 O 1.21578 * 119.99289 * 7.23063 * 7 6 5 9 9 N 1.34771 * 120.00190 * 187.23012 * 7 6 5 10 10 C 1.46928 * 120.63181 * 6.95503 * 9 7 6 11 11 C 1.53192 * 108.77362 * 126.36884 * 10 9 7 12 12 C 1.53041 * 109.31536 * 54.63559 * 11 10 9 13 13 H 1.08998 * 109.45766 * 178.62617 * 12 11 10 14 14 N 1.46502 * 109.45836 * 58.65333 * 12 11 10 15 15 C 1.36938 * 119.99805 * 85.00226 * 14 12 11 16 16 H 1.08002 * 120.00292 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99937 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99888 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00166 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47080 * 59.99751 * 19 17 15 21 21 H 1.48500 * 109.47269 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47261 * 299.99786 * 19 17 15 23 23 C 1.53041 * 109.53779 * 298.63409 * 12 11 10 24 24 H 1.09000 * 109.49842 * 301.38071 * 23 12 11 25 25 C 1.53000 * 109.49827 * 181.31340 * 23 12 11 26 26 C 1.52995 * 109.46916 * 174.99797 * 25 23 12 27 27 C 1.46927 * 120.63023 * 186.67681 * 9 7 6 28 28 O 1.34663 * 106.24364 * 0.39543 * 6 5 4 29 29 N 1.20882 * 111.62907 * 359.73393 * 28 6 5 30 30 H 1.08996 * 109.47525 * 59.99829 * 1 2 3 31 31 H 1.09009 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47230 * 299.99671 * 1 2 3 33 33 H 1.09001 * 109.47419 * 239.99960 * 2 1 3 34 34 H 1.09005 * 109.47419 * 119.99997 * 2 1 3 35 35 H 1.07992 * 128.09580 * 359.97438 * 5 4 3 36 36 H 1.08998 * 109.58534 * 246.15537 * 10 9 7 37 37 H 1.09003 * 109.58694 * 6.58395 * 10 9 7 38 38 H 1.09007 * 109.49475 * 174.58642 * 11 10 9 39 39 H 1.08995 * 109.50065 * 294.64903 * 11 10 9 40 40 H 0.96999 * 119.99796 * 265.00194 * 14 12 11 41 41 H 0.96996 * 120.00186 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46944 * 294.99902 * 25 23 12 43 43 H 1.09001 * 109.46654 * 54.99965 * 25 23 12 44 44 H 1.09001 * 109.47322 * 60.00577 * 26 25 23 45 45 H 1.08999 * 109.46863 * 179.97438 * 26 25 23 46 46 H 1.08991 * 109.47484 * 300.00006 * 26 25 23 47 47 H 1.09003 * 109.58491 * 353.41869 * 27 9 7 48 48 H 1.09000 * 109.58699 * 113.84473 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 4.0451 2.7628 -0.0051 6 6 5.3623 2.3989 0.0014 7 6 6.5302 3.3007 0.0021 8 8 6.3723 4.4995 0.1291 9 7 7.7717 2.7955 -0.1380 10 6 7.9708 1.3723 -0.4438 11 6 8.8586 1.2545 -1.6866 12 6 10.1548 2.0356 -1.4586 13 1 10.7988 1.9332 -2.3320 14 7 10.8434 1.5049 -0.2795 15 6 11.6720 0.4213 -0.4004 16 1 11.8174 -0.0423 -1.3649 17 6 12.3249 -0.0812 0.7168 18 7 12.1472 0.4835 1.8923 19 14 13.4545 -1.5597 0.5520 20 1 14.5546 -1.2393 -0.3926 21 1 14.0250 -1.8974 1.8809 22 1 12.6815 -2.7184 0.0369 23 6 9.8289 3.5143 -1.2362 24 1 9.2951 3.9036 -2.1032 25 6 11.1273 4.2996 -1.0410 26 6 10.8102 5.7932 -0.9433 27 6 8.9519 3.6588 0.0062 28 8 5.3812 1.0524 0.0011 29 7 4.2638 0.5912 0.0006 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.6292 3.7594 -0.0111 36 1 8.4562 0.8817 0.3999 37 1 7.0067 0.9018 -0.6375 38 1 9.0931 0.2055 -1.8681 39 1 8.3333 1.6643 -2.5492 40 1 10.7125 1.9211 0.5869 41 1 12.6037 0.1326 2.6729 42 1 11.6161 3.9712 -0.1237 43 1 11.7894 4.1234 -1.8888 44 1 10.1481 5.9694 -0.0955 45 1 11.7351 6.3526 -0.8038 46 1 10.3214 6.1216 -1.8605 47 1 8.6349 4.6966 0.1093 48 1 9.5189 3.3584 0.8873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037875862.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:57 Heat of formation + Delta-G solvation = 10.033552 kcal Electronic energy + Delta-G solvation = -30290.213770 eV Core-core repulsion = 26156.883645 eV Total energy + Delta-G solvation = -4133.330125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.09948 -40.14735 -39.21104 -37.97928 -34.70144 -33.79813 -33.63661 -32.09731 -31.73511 -31.41204 -29.47902 -28.58772 -25.86928 -24.23487 -23.98597 -23.55283 -23.41106 -22.50282 -20.88242 -20.64936 -18.91327 -18.11855 -17.84668 -17.38242 -17.04818 -16.28607 -16.19973 -15.83584 -15.19094 -14.83582 -14.57552 -14.43933 -14.05388 -13.83986 -13.76883 -13.40336 -13.33704 -13.22027 -13.08537 -13.00927 -12.58646 -12.25072 -12.21622 -11.75339 -11.49913 -11.46375 -11.44433 -11.11249 -10.95196 -10.82562 -10.71963 -10.40467 -10.31533 -10.21860 -10.04993 -9.97315 -9.81997 -9.57440 -9.47247 -8.93458 -8.40285 -6.99569 -5.80090 -3.08690 0.68204 1.96434 2.38181 2.50131 2.96870 3.27589 3.41890 3.47205 3.47820 3.92723 4.41628 4.55493 4.56710 4.59782 4.68108 4.88912 5.01045 5.10984 5.21772 5.25510 5.30828 5.38737 5.48327 5.51349 5.56719 5.59702 5.63185 5.66301 5.75135 5.80004 5.87735 6.03343 6.12001 6.18415 6.30106 6.33630 6.39079 6.50724 6.56530 6.68470 6.72470 6.75351 6.89767 6.94497 7.39791 7.67580 7.85707 8.07123 8.38294 9.50083 10.05734 10.40798 11.42175 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.003162 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.729657 B = 8854.264251 C =10635.513565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.206 3.794 5 C -0.161 4.161 6 C -0.046 4.046 7 C 0.598 3.402 8 O -0.523 6.523 9 N -0.582 5.582 10 C 0.102 3.898 11 C -0.149 4.149 12 C 0.177 3.823 13 H 0.053 0.947 14 N -0.718 5.718 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.010 4.010 18 N -0.932 5.932 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.104 4.104 24 H 0.068 0.932 25 C -0.110 4.110 26 C -0.154 4.154 27 C 0.118 3.882 28 O 0.121 5.879 29 N -0.395 5.395 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.188 0.812 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.090 0.910 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.255 4.049 -5.489 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.190 6.190 4 C 0.009 3.991 5 C -0.183 4.183 6 C -0.112 4.112 7 C 0.382 3.618 8 O -0.401 6.401 9 N -0.312 5.312 10 C -0.020 4.020 11 C -0.190 4.190 12 C 0.067 3.933 13 H 0.071 0.929 14 N -0.361 5.361 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.124 4.124 24 H 0.087 0.913 25 C -0.148 4.148 26 C -0.211 4.211 27 C -0.003 4.003 28 O 0.058 5.942 29 N -0.121 5.121 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.206 0.794 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.109 0.891 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.486 3.409 -5.444 18.628 hybrid contribution 0.361 -0.410 0.243 0.598 sum -17.124 2.999 -5.201 18.146 Atomic orbital electron populations 1.21795 0.92176 1.03219 1.03637 1.22840 0.95849 0.80552 1.02596 1.86204 1.13069 1.30286 1.89393 1.21800 0.85781 0.90474 1.01052 1.22123 0.90042 0.99168 1.07014 1.24131 0.96554 0.84296 1.06215 1.16602 0.80988 0.85822 0.78372 1.90836 1.84463 1.13162 1.51599 1.48094 1.04820 1.11578 1.66750 1.22177 1.00442 0.78969 1.00365 1.22538 0.98249 1.02737 0.95461 1.20244 0.91442 0.89399 0.92219 0.92868 1.42461 1.52895 1.35377 1.05323 1.19158 1.18580 1.05149 0.94042 0.91283 1.24695 1.00838 0.99577 0.95541 1.69629 1.46985 1.42829 0.98581 0.86320 0.80792 0.82874 0.76474 1.21391 1.21841 1.21348 1.21694 0.95974 0.97463 0.97265 0.91329 1.21416 0.96400 0.93418 1.03531 1.21861 1.01059 0.96880 1.01333 1.21777 0.84527 0.94830 0.99205 1.85184 1.22039 1.18727 1.68268 1.74001 0.90885 1.22654 1.24540 0.91362 0.89939 0.91348 0.91482 0.91455 0.79436 0.88860 0.89764 0.90331 0.93209 0.78109 0.93463 0.90382 0.91875 0.92771 0.93115 0.93312 0.89131 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.15 0.38 -0.55 16 2 C 0.06 0.51 6.38 37.15 0.24 0.75 16 3 O -0.28 -3.31 10.21 -18.91 -0.19 -3.50 16 4 C 0.21 2.71 8.00 -16.72 -0.13 2.58 16 5 C -0.16 -2.05 10.98 -38.77 -0.43 -2.48 16 6 C -0.05 -0.65 6.90 -36.36 -0.25 -0.91 16 7 C 0.60 9.37 7.68 -12.47 -0.10 9.28 16 8 O -0.52 -9.11 16.34 5.30 0.09 -9.03 16 9 N -0.58 -9.13 2.98 -174.25 -0.52 -9.65 16 10 C 0.10 1.63 5.89 -3.71 -0.02 1.61 16 11 C -0.15 -2.39 5.78 -26.61 -0.15 -2.54 16 12 C 0.18 3.15 2.53 -67.89 -0.17 2.98 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 N -0.72 -15.84 3.72 -53.38 -0.20 -16.04 16 15 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 16 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 19 Si 0.90 21.52 29.55 -169.99 -5.02 16.49 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.10 -1.60 2.12 -90.72 -0.19 -1.79 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 26 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 27 C 0.12 1.86 5.02 -3.93 -0.02 1.84 16 28 O 0.12 1.75 7.91 15.49 0.12 1.88 16 29 N -0.40 -5.62 11.50 30.47 0.35 -5.27 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.19 2.02 8.06 -52.49 -0.42 1.59 16 36 H 0.09 1.73 7.74 -51.93 -0.40 1.32 16 37 H 0.08 1.24 4.26 -52.63 -0.22 1.02 16 38 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.38 9.07 5.95 -40.82 -0.24 8.82 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.39 5.71 -51.93 -0.30 1.10 16 48 H 0.08 1.43 6.64 -51.93 -0.34 1.09 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -28.90 384.98 -7.02 -35.91 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.30 Total: 8.43 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -0.87 Total: 0.80 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.36 Total: -56.79 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.02 Total: -10.65 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.90 -7.02 -35.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037875862.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.948 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds