Wall clock time and date at job start Tue Mar 31 2020 20:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46950 * 2 1 4 4 C 1.35731 * 116.99957 * 180.02562 * 3 2 1 5 5 C 1.41850 * 126.78542 * 180.23475 * 4 3 2 6 6 C 1.36664 * 103.81193 * 180.11946 * 5 4 3 7 7 C 1.47538 * 126.88186 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99652 * 352.77958 * 7 6 5 9 9 N 1.34779 * 120.00215 * 172.77571 * 7 6 5 10 10 C 1.46924 * 120.62826 * 353.06224 * 9 7 6 11 11 C 1.53195 * 108.77490 * 233.58737 * 10 9 7 12 12 C 1.53048 * 109.31197 * 305.36459 * 11 10 9 13 13 H 1.08996 * 109.46048 * 181.37985 * 12 11 10 14 14 N 1.46491 * 109.45902 * 301.34708 * 12 11 10 15 15 C 1.36945 * 119.99972 * 275.06259 * 14 12 11 16 16 H 1.08001 * 119.99525 * 0.02562 * 15 14 12 17 17 C 1.38808 * 119.99854 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00486 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99816 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46966 * 60.00342 * 19 17 15 21 21 H 1.48491 * 109.47162 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47155 * 300.00565 * 19 17 15 23 23 C 1.53049 * 109.53518 * 61.36587 * 12 11 10 24 24 H 1.08997 * 109.52464 * 58.60301 * 23 12 11 25 25 C 1.53000 * 109.49484 * 178.68372 * 23 12 11 26 26 C 1.53002 * 109.47023 * 184.83613 * 25 23 12 27 27 C 1.46924 * 120.62921 * 173.03978 * 9 7 6 28 28 O 1.34662 * 106.24077 * 359.66835 * 6 5 4 29 29 N 1.20879 * 111.63161 * 0.22853 * 28 6 5 30 30 H 1.09002 * 109.47002 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47029 * 299.99476 * 1 2 3 32 32 H 1.08992 * 109.47390 * 59.99970 * 1 2 3 33 33 H 1.08995 * 109.46976 * 239.99664 * 2 1 3 34 34 H 1.08998 * 109.47247 * 119.99610 * 2 1 3 35 35 H 1.08000 * 128.09797 * 0.03090 * 5 4 3 36 36 H 1.08997 * 109.58887 * 353.37123 * 10 9 7 37 37 H 1.08994 * 109.58922 * 113.80028 * 10 9 7 38 38 H 1.09003 * 109.49901 * 65.31633 * 11 10 9 39 39 H 1.08996 * 109.49820 * 185.38477 * 11 10 9 40 40 H 0.97000 * 120.00516 * 95.07143 * 14 12 11 41 41 H 0.97004 * 120.00399 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46862 * 64.83746 * 25 23 12 43 43 H 1.08999 * 109.47375 * 304.83716 * 25 23 12 44 44 H 1.09001 * 109.46774 * 179.97438 * 26 25 23 45 45 H 1.09004 * 109.46478 * 60.00127 * 26 25 23 46 46 H 1.08999 * 109.47130 * 300.00254 * 26 25 23 47 47 H 1.09004 * 109.59119 * 6.62674 * 27 9 7 48 48 H 1.09003 * 109.70389 * 246.26533 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0451 2.7627 0.0040 6 6 5.3624 2.3988 -0.0016 7 6 6.5302 3.3006 -0.0006 8 8 6.3725 4.4995 -0.1268 9 7 7.7717 2.7953 0.1401 10 6 7.9704 1.3718 0.4447 11 6 8.8580 1.2527 1.6876 12 6 10.1544 2.0338 1.4606 13 1 10.7983 1.9305 2.3339 14 7 10.8431 1.5041 0.2811 15 6 11.6705 0.4195 0.4009 16 1 11.8148 -0.0456 1.3649 17 6 12.3226 -0.0827 -0.7167 18 7 12.1463 0.4838 -1.8916 19 14 13.4507 -1.5628 -0.5535 20 1 12.6763 -2.7209 -0.0394 21 1 14.0215 -1.8991 -1.8824 22 1 14.5512 -1.2445 0.3914 23 6 9.8287 3.5128 1.2395 24 1 9.2945 3.9017 2.1064 25 6 11.1273 4.2981 1.0453 26 6 10.8100 5.7915 0.9448 27 6 8.9521 3.6575 -0.0085 28 8 5.3812 1.0524 -0.0012 29 7 4.2638 0.5911 -0.0007 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.6293 3.7595 0.0091 36 1 7.0064 0.9013 0.6378 37 1 8.4559 0.8818 -0.3993 38 1 8.3327 1.6624 2.5504 39 1 9.0918 0.2036 1.8685 40 1 10.7133 1.9217 -0.5847 41 1 12.6024 0.1331 -2.6726 42 1 11.6177 3.9684 0.1293 43 1 11.7880 4.1234 1.8943 44 1 11.7352 6.3510 0.8068 45 1 10.3195 6.1211 1.8607 46 1 10.1492 5.9662 0.0957 47 1 8.6357 4.6952 -0.1145 48 1 9.5185 3.3563 -0.8898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037875868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:00 Heat of formation + Delta-G solvation = 10.056017 kcal Electronic energy + Delta-G solvation = -30290.078492 eV Core-core repulsion = 26156.749341 eV Total energy + Delta-G solvation = -4133.329151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.10026 -40.13808 -39.21153 -37.96921 -34.69910 -33.79059 -33.63652 -32.09715 -31.73501 -31.41199 -29.47664 -28.57389 -25.87098 -24.23308 -23.98563 -23.55312 -23.41102 -22.50130 -20.88162 -20.64637 -18.91206 -18.11918 -17.84823 -17.38085 -17.04786 -16.28569 -16.19937 -15.83446 -15.19157 -14.83386 -14.57679 -14.43511 -14.05213 -13.83876 -13.77049 -13.40310 -13.33267 -13.22022 -13.08492 -13.00980 -12.57996 -12.24779 -12.21583 -11.75250 -11.49906 -11.46406 -11.44416 -11.11169 -10.95198 -10.82508 -10.72025 -10.40393 -10.31484 -10.21810 -10.04845 -9.97311 -9.81985 -9.57529 -9.47229 -8.93468 -8.40065 -6.99523 -5.80079 -3.08697 0.68153 1.96425 2.38189 2.50179 2.96944 3.27549 3.41900 3.47217 3.47837 3.92723 4.41624 4.55537 4.56702 4.59749 4.68105 4.88938 5.01043 5.10899 5.21781 5.25506 5.31015 5.38756 5.48328 5.51461 5.56823 5.59696 5.63203 5.66200 5.74715 5.80150 5.87683 6.03390 6.12127 6.18552 6.29958 6.33786 6.39169 6.50827 6.56601 6.68566 6.72435 6.75349 6.89806 6.94639 7.39799 7.67620 7.85707 8.07122 8.38303 9.50107 10.05803 10.40800 11.42164 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.003163 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.785931 B = 8851.275587 C =10632.914642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.206 3.794 5 C -0.161 4.161 6 C -0.046 4.046 7 C 0.598 3.402 8 O -0.523 6.523 9 N -0.582 5.582 10 C 0.102 3.898 11 C -0.149 4.149 12 C 0.177 3.823 13 H 0.053 0.947 14 N -0.718 5.718 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.010 4.010 18 N -0.932 5.932 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.104 4.104 24 H 0.069 0.931 25 C -0.110 4.110 26 C -0.154 4.154 27 C 0.118 3.882 28 O 0.121 5.879 29 N -0.395 5.395 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.188 0.812 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.090 0.910 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.257 4.044 5.478 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.190 6.190 4 C 0.009 3.991 5 C -0.183 4.183 6 C -0.112 4.112 7 C 0.382 3.618 8 O -0.401 6.401 9 N -0.312 5.312 10 C -0.020 4.020 11 C -0.190 4.190 12 C 0.067 3.933 13 H 0.071 0.929 14 N -0.361 5.361 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.206 4.206 18 N -0.580 5.580 19 Si 0.735 3.265 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.124 4.124 24 H 0.087 0.913 25 C -0.148 4.148 26 C -0.211 4.211 27 C -0.004 4.004 28 O 0.058 5.942 29 N -0.121 5.121 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.206 0.794 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.109 0.891 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.487 3.405 5.436 18.627 hybrid contribution 0.361 -0.412 -0.247 0.600 sum -17.127 2.994 5.189 18.144 Atomic orbital electron populations 1.21794 0.92175 1.03219 1.03636 1.22840 0.95850 0.80553 1.02595 1.86203 1.13070 1.30285 1.89393 1.21799 0.85781 0.90473 1.01055 1.22124 0.90043 0.99169 1.07010 1.24130 0.96554 0.84296 1.06220 1.16605 0.80994 0.85829 0.78360 1.90838 1.84468 1.13150 1.51602 1.48092 1.04816 1.11608 1.66731 1.22174 1.00444 0.78955 1.00376 1.22538 0.98251 1.02724 0.95459 1.20244 0.91436 0.89413 0.92211 0.92877 1.42462 1.52966 1.35270 1.05365 1.19158 1.18658 1.05062 0.94055 0.91283 1.24692 1.00841 0.99564 0.95540 1.69628 1.47025 1.42770 0.98601 0.86322 0.80786 0.82892 0.76475 1.21341 1.21841 1.21395 1.21770 0.95955 0.97429 0.97197 0.91303 1.21420 0.96423 0.93431 1.03522 1.21864 1.01050 0.96880 1.01334 1.21862 0.84503 0.94844 0.99145 1.85183 1.22039 1.18728 1.68264 1.74001 0.90885 1.22654 1.24539 0.89940 0.91368 0.91343 0.91455 0.91482 0.79435 0.89764 0.88869 0.93211 0.90335 0.78110 0.93462 0.90381 0.91887 0.93120 0.93321 0.92764 0.89140 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.51 6.38 37.16 0.24 0.75 16 3 O -0.28 -3.31 10.21 -18.90 -0.19 -3.50 16 4 C 0.21 2.71 8.00 -16.72 -0.13 2.58 16 5 C -0.16 -2.05 10.98 -38.77 -0.43 -2.48 16 6 C -0.05 -0.66 6.90 -36.36 -0.25 -0.91 16 7 C 0.60 9.37 7.68 -12.47 -0.10 9.27 16 8 O -0.52 -9.11 16.34 5.29 0.09 -9.02 16 9 N -0.58 -9.13 2.97 -174.00 -0.52 -9.65 16 10 C 0.10 1.63 5.89 -3.71 -0.02 1.61 16 11 C -0.15 -2.39 5.78 -26.61 -0.15 -2.54 16 12 C 0.18 3.15 2.53 -67.89 -0.17 2.98 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 N -0.72 -15.84 3.72 -53.38 -0.20 -16.04 16 15 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 16 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -26.55 13.06 55.49 0.72 -25.82 16 19 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.10 -1.59 2.14 -90.49 -0.19 -1.78 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 25 C -0.11 -1.66 5.19 -26.73 -0.14 -1.79 16 26 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 27 C 0.12 1.86 5.03 -3.71 -0.02 1.84 16 28 O 0.12 1.75 7.91 15.50 0.12 1.88 16 29 N -0.40 -5.62 11.50 30.47 0.35 -5.27 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.19 2.02 8.06 -52.49 -0.42 1.59 16 36 H 0.08 1.24 4.26 -52.63 -0.22 1.02 16 37 H 0.09 1.72 7.74 -51.93 -0.40 1.32 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.38 9.06 5.94 -40.82 -0.24 8.82 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.08 1.37 7.69 -51.93 -0.40 0.97 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 47 H 0.09 1.39 5.72 -51.93 -0.30 1.10 16 48 H 0.08 1.44 6.65 -51.93 -0.35 1.09 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -28.90 384.98 -7.01 -35.91 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.30 Total: 8.43 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.87 Total: 0.81 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.36 Total: -56.78 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.02 Total: -10.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.90 -7.01 -35.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037875868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.965 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds