Wall clock time and date at job start Tue Mar 31 2020 20:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46950 * 2 1 4 4 C 1.35731 * 116.99957 * 180.02562 * 3 2 1 5 5 C 1.41850 * 126.78542 * 180.23475 * 4 3 2 6 6 C 1.36664 * 103.81193 * 180.11946 * 5 4 3 7 7 C 1.47538 * 126.88186 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99652 * 352.77958 * 7 6 5 9 9 N 1.34779 * 120.00215 * 172.77571 * 7 6 5 10 10 C 1.46924 * 120.62826 * 353.06224 * 9 7 6 11 11 C 1.53195 * 108.77490 * 233.58737 * 10 9 7 12 12 C 1.53048 * 109.31197 * 305.36459 * 11 10 9 13 13 H 1.08996 * 109.46048 * 181.37985 * 12 11 10 14 14 N 1.46491 * 109.45902 * 301.34708 * 12 11 10 15 15 C 1.36945 * 119.99972 * 275.06259 * 14 12 11 16 16 H 1.08001 * 119.99525 * 0.02562 * 15 14 12 17 17 C 1.38808 * 119.99854 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00486 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99816 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46966 * 60.00342 * 19 17 15 21 21 H 1.48491 * 109.47162 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47155 * 300.00565 * 19 17 15 23 23 C 1.53049 * 109.53518 * 61.36587 * 12 11 10 24 24 H 1.08997 * 109.52464 * 58.60301 * 23 12 11 25 25 C 1.53000 * 109.49484 * 178.68372 * 23 12 11 26 26 C 1.53002 * 109.47023 * 184.83613 * 25 23 12 27 27 C 1.46924 * 120.62921 * 173.03978 * 9 7 6 28 28 O 1.34662 * 106.24077 * 359.66835 * 6 5 4 29 29 N 1.20879 * 111.63161 * 0.22853 * 28 6 5 30 30 H 1.09002 * 109.47002 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47029 * 299.99476 * 1 2 3 32 32 H 1.08992 * 109.47390 * 59.99970 * 1 2 3 33 33 H 1.08995 * 109.46976 * 239.99664 * 2 1 3 34 34 H 1.08998 * 109.47247 * 119.99610 * 2 1 3 35 35 H 1.08000 * 128.09797 * 0.03090 * 5 4 3 36 36 H 1.08997 * 109.58887 * 353.37123 * 10 9 7 37 37 H 1.08994 * 109.58922 * 113.80028 * 10 9 7 38 38 H 1.09003 * 109.49901 * 65.31633 * 11 10 9 39 39 H 1.08996 * 109.49820 * 185.38477 * 11 10 9 40 40 H 0.97000 * 120.00516 * 95.07143 * 14 12 11 41 41 H 0.97004 * 120.00399 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46862 * 64.83746 * 25 23 12 43 43 H 1.08999 * 109.47375 * 304.83716 * 25 23 12 44 44 H 1.09001 * 109.46774 * 179.97438 * 26 25 23 45 45 H 1.09004 * 109.46478 * 60.00127 * 26 25 23 46 46 H 1.08999 * 109.47130 * 300.00254 * 26 25 23 47 47 H 1.09004 * 109.59119 * 6.62674 * 27 9 7 48 48 H 1.09003 * 109.70389 * 246.26533 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0451 2.7627 0.0040 6 6 5.3624 2.3988 -0.0016 7 6 6.5302 3.3006 -0.0006 8 8 6.3725 4.4995 -0.1268 9 7 7.7717 2.7953 0.1401 10 6 7.9704 1.3718 0.4447 11 6 8.8580 1.2527 1.6876 12 6 10.1544 2.0338 1.4606 13 1 10.7983 1.9305 2.3339 14 7 10.8431 1.5041 0.2811 15 6 11.6705 0.4195 0.4009 16 1 11.8148 -0.0456 1.3649 17 6 12.3226 -0.0827 -0.7167 18 7 12.1463 0.4838 -1.8916 19 14 13.4507 -1.5628 -0.5535 20 1 12.6763 -2.7209 -0.0394 21 1 14.0215 -1.8991 -1.8824 22 1 14.5512 -1.2445 0.3914 23 6 9.8287 3.5128 1.2395 24 1 9.2945 3.9017 2.1064 25 6 11.1273 4.2981 1.0453 26 6 10.8100 5.7915 0.9448 27 6 8.9521 3.6575 -0.0085 28 8 5.3812 1.0524 -0.0012 29 7 4.2638 0.5911 -0.0007 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.6293 3.7595 0.0091 36 1 7.0064 0.9013 0.6378 37 1 8.4559 0.8818 -0.3993 38 1 8.3327 1.6624 2.5504 39 1 9.0918 0.2036 1.8685 40 1 10.7133 1.9217 -0.5847 41 1 12.6024 0.1331 -2.6726 42 1 11.6177 3.9684 0.1293 43 1 11.7880 4.1234 1.8943 44 1 11.7352 6.3510 0.8068 45 1 10.3195 6.1211 1.8607 46 1 10.1492 5.9662 0.0957 47 1 8.6357 4.6952 -0.1145 48 1 9.5185 3.3563 -0.8898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037875868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:59 Heat of formation + Delta-G solvation = -7.941282 kcal Electronic energy + Delta-G solvation = -30290.858914 eV Core-core repulsion = 26156.749341 eV Total energy + Delta-G solvation = -4134.109572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.16989 -41.44097 -40.10370 -39.33079 -36.07992 -35.35262 -34.62902 -33.44801 -33.09715 -32.16764 -31.04085 -29.94906 -27.18664 -25.59186 -25.16402 -24.99549 -24.49450 -23.53165 -22.13092 -21.72307 -20.23772 -19.27275 -19.20154 -19.04763 -18.10578 -17.54431 -17.05081 -16.99211 -16.67147 -16.15747 -15.93292 -15.67658 -15.53006 -15.18791 -14.95273 -14.72965 -14.58219 -14.36610 -14.09384 -14.03308 -13.64507 -13.52713 -13.06664 -13.00406 -12.85452 -12.79046 -12.62912 -12.39622 -12.34238 -12.18340 -12.14274 -12.04588 -11.81489 -11.61650 -11.42597 -11.34710 -11.09739 -11.05154 -10.78695 -10.46643 -9.74402 -8.88527 -7.85178 -5.10740 -0.43830 0.92787 1.33514 1.46458 1.52346 1.52810 1.58490 1.76113 2.10208 2.62703 2.91118 3.30577 3.48711 3.60216 3.83368 3.88416 3.90823 3.92317 4.03534 4.07975 4.10677 4.26199 4.34045 4.35497 4.46025 4.50365 4.53003 4.63046 4.71156 4.79148 4.85141 4.85782 4.93842 5.03265 5.04848 5.15330 5.19317 5.23369 5.28543 5.30096 5.44081 5.53200 5.62573 5.67749 5.84989 6.12837 6.36749 6.65622 6.93057 7.44824 8.20963 8.44334 9.37758 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.003163 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.785931 B = 8851.275587 C =10632.914642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.286 6.286 4 C 0.208 3.792 5 C -0.145 4.145 6 C -0.059 4.059 7 C 0.603 3.397 8 O -0.540 6.540 9 N -0.583 5.583 10 C 0.112 3.888 11 C -0.141 4.141 12 C 0.172 3.828 13 H 0.051 0.949 14 N -0.723 5.723 15 C -0.225 4.225 16 H 0.075 0.925 17 C -0.072 4.072 18 N -0.967 5.967 19 Si 0.960 3.040 20 H -0.281 1.281 21 H -0.303 1.303 22 H -0.282 1.282 23 C -0.093 4.093 24 H 0.090 0.910 25 C -0.105 4.105 26 C -0.147 4.147 27 C 0.123 3.877 28 O 0.111 5.889 29 N -0.405 5.405 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.209 0.791 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.374 0.626 41 H 0.247 0.753 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.098 0.902 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.054 4.445 7.144 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.193 6.193 4 C 0.010 3.990 5 C -0.168 4.168 6 C -0.125 4.125 7 C 0.389 3.611 8 O -0.418 6.418 9 N -0.313 5.313 10 C -0.010 4.010 11 C -0.182 4.182 12 C 0.063 3.937 13 H 0.069 0.931 14 N -0.365 5.365 15 C -0.357 4.357 16 H 0.093 0.907 17 C -0.264 4.264 18 N -0.619 5.619 19 Si 0.791 3.209 20 H -0.208 1.208 21 H -0.230 1.230 22 H -0.209 1.209 23 C -0.112 4.112 24 H 0.108 0.892 25 C -0.143 4.143 26 C -0.204 4.204 27 C 0.001 3.999 28 O 0.048 5.952 29 N -0.132 5.132 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.226 0.774 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.208 0.792 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.117 0.883 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.306 3.809 7.156 20.938 hybrid contribution 0.796 -0.525 -0.709 1.188 sum -18.510 3.284 6.447 19.874 Atomic orbital electron populations 1.21822 0.89846 1.04668 1.03867 1.23122 0.97665 0.79333 1.02500 1.86232 1.12068 1.31961 1.89067 1.21949 0.86376 0.90370 1.00272 1.22413 0.89360 0.99972 1.05048 1.23906 0.96519 0.84257 1.07768 1.16660 0.81086 0.85768 0.77594 1.90825 1.84775 1.13898 1.52338 1.48069 1.04997 1.11363 1.66885 1.22005 1.00910 0.79055 0.99072 1.22420 0.97371 1.01972 0.96430 1.20467 0.91774 0.91127 0.90349 0.93064 1.42568 1.52946 1.34576 1.06362 1.19510 1.17374 1.04928 0.93857 0.90723 1.25338 1.03143 1.02329 0.95588 1.69779 1.48682 1.44400 0.99022 0.85402 0.79297 0.80474 0.75708 1.20760 1.23025 1.20885 1.21687 0.96172 0.95715 0.97672 0.89197 1.21339 0.95981 0.95167 1.01840 1.21801 1.01644 0.94921 1.02081 1.21758 0.84470 0.95153 0.98480 1.85135 1.22334 1.18819 1.68897 1.73990 0.90998 1.23082 1.25176 0.87869 0.91031 0.91185 0.91718 0.91439 0.77390 0.88243 0.91960 0.90550 0.91252 0.79201 0.94441 0.93539 0.91900 0.92312 0.91745 0.92854 0.88338 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.05 0.79 6.38 71.98 0.46 1.25 16 3 O -0.29 -6.21 10.21 -90.54 -0.92 -7.13 16 4 C 0.21 5.14 8.00 85.78 0.69 5.82 16 5 C -0.15 -3.44 10.98 22.80 0.25 -3.19 16 6 C -0.06 -1.60 6.90 24.36 0.17 -1.43 16 7 C 0.60 18.21 7.68 86.70 0.67 18.88 16 8 O -0.54 -18.00 16.34 -3.99 -0.07 -18.07 16 9 N -0.58 -17.92 2.97 -822.66 -2.44 -20.36 16 10 C 0.11 3.52 5.89 86.36 0.51 4.03 16 11 C -0.14 -4.37 5.78 30.68 0.18 -4.19 16 12 C 0.17 5.97 2.53 45.03 0.11 6.08 16 13 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 14 N -0.72 -32.40 3.72 -322.81 -1.20 -33.60 16 15 C -0.22 -11.47 9.93 84.03 0.83 -10.64 16 16 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 17 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 18 N -0.97 -56.84 13.06 21.65 0.28 -56.55 16 19 Si 0.96 44.87 29.55 68.60 2.03 46.90 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C -0.09 -2.74 2.14 -10.71 -0.02 -2.76 16 24 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 25 C -0.10 -3.10 5.19 30.60 0.16 -2.94 16 26 C -0.15 -3.51 9.67 71.98 0.70 -2.81 16 27 C 0.12 3.84 5.03 86.36 0.43 4.27 16 28 O 0.11 3.10 7.91 65.63 0.52 3.62 16 29 N -0.40 -11.07 11.50 -172.02 -1.98 -13.05 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.10 2.86 4.26 -13.53 -0.06 2.80 16 37 H 0.06 2.37 7.74 -2.39 -0.02 2.35 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.37 18.31 5.94 -92.71 -0.55 17.76 16 41 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 42 H 0.05 1.67 7.69 -2.39 -0.02 1.65 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.05 1.28 6.70 -2.39 -0.02 1.26 16 47 H 0.10 2.94 5.72 -2.38 -0.01 2.92 16 48 H 0.06 2.15 6.65 -2.39 -0.02 2.14 16 Total: -1.00 -62.04 384.98 2.93 -59.11 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.38 Total: 30.93 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.34 Total: 8.20 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -5.34 Total: -123.56 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.47 Total: -21.58 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -62.04 2.93 -59.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037875868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.171 kcal (2) G-P(sol) polarization free energy of solvation -62.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds