Wall clock time and date at job start Tue Mar 31 2020 20:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42906 * 109.46662 * 2 1 4 4 C 1.35729 * 116.99533 * 180.02562 * 3 2 1 5 5 C 1.41858 * 126.78703 * 180.23363 * 4 3 2 6 6 C 1.36664 * 103.81522 * 180.11982 * 5 4 3 7 7 C 1.47537 * 126.87826 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00479 * 352.77462 * 7 6 5 9 9 N 1.34777 * 119.99732 * 172.77456 * 7 6 5 10 10 C 1.46933 * 120.63053 * 353.01451 * 9 7 6 11 11 C 1.53192 * 108.76197 * 233.64100 * 10 9 7 12 12 C 1.53043 * 109.31519 * 305.34284 * 11 10 9 13 13 H 1.09004 * 109.46183 * 301.37628 * 12 11 10 14 14 N 1.46496 * 109.46194 * 181.40561 * 12 11 10 15 15 C 1.36937 * 120.00423 * 84.97022 * 14 12 11 16 16 H 1.08001 * 119.99529 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00041 * 179.97438 * 15 14 12 18 18 N 1.31614 * 119.99819 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99737 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47127 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47061 * 300.00230 * 19 17 15 22 22 H 1.48495 * 109.47376 * 60.00593 * 19 17 15 23 23 C 1.53044 * 109.52627 * 61.38803 * 12 11 10 24 24 H 1.08997 * 109.49307 * 58.57991 * 23 12 11 25 25 C 1.52991 * 109.49751 * 178.67988 * 23 12 11 26 26 C 1.52997 * 109.47037 * 185.00119 * 25 23 12 27 27 C 1.46928 * 120.63133 * 173.03773 * 9 7 6 28 28 O 1.34662 * 106.23661 * 359.67195 * 6 5 4 29 29 N 1.20870 * 111.63545 * 0.21936 * 28 6 5 30 30 H 1.09008 * 109.46716 * 299.99552 * 1 2 3 31 31 H 1.08997 * 109.47397 * 59.99739 * 1 2 3 32 32 H 1.08997 * 109.46719 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47131 * 240.00358 * 2 1 3 34 34 H 1.08997 * 109.47221 * 119.99736 * 2 1 3 35 35 H 1.08006 * 128.08803 * 0.03637 * 5 4 3 36 36 H 1.08995 * 109.58204 * 353.41791 * 10 9 7 37 37 H 1.09002 * 109.58405 * 113.70354 * 10 9 7 38 38 H 1.09004 * 109.48402 * 185.40307 * 11 10 9 39 39 H 1.09001 * 109.51491 * 65.30396 * 11 10 9 40 40 H 0.97003 * 119.99854 * 264.97174 * 14 12 11 41 41 H 0.97004 * 120.00013 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.47111 * 304.99872 * 25 23 12 43 43 H 1.09004 * 109.47405 * 65.00019 * 25 23 12 44 44 H 1.09004 * 109.47227 * 299.99355 * 26 25 23 45 45 H 1.08999 * 109.47462 * 60.00020 * 26 25 23 46 46 H 1.09009 * 109.47353 * 179.97438 * 26 25 23 47 47 H 1.08996 * 109.58493 * 6.58506 * 27 9 7 48 48 H 1.08998 * 109.70594 * 246.22486 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3519 1.5252 -0.0005 5 6 4.0452 2.7628 0.0040 6 6 5.3625 2.3989 -0.0016 7 6 6.5302 3.3007 -0.0006 8 8 6.3726 4.4996 -0.1269 9 7 7.7717 2.7954 0.1401 10 6 7.9704 1.3720 0.4458 11 6 8.8572 1.2542 1.6893 12 6 10.1538 2.0350 1.4623 13 1 10.6666 1.6403 0.5851 14 7 11.0188 1.8968 2.6365 15 6 11.8462 0.8120 2.7536 16 1 11.8613 0.0585 1.9800 17 6 12.6662 0.6814 3.8660 18 7 12.6480 1.6000 4.8084 19 14 13.7954 -0.7981 4.0254 20 1 14.5605 -0.7024 5.2945 21 1 12.9840 -2.0418 4.0297 22 1 14.7389 -0.8265 2.8790 23 6 9.8281 3.5138 1.2400 24 1 9.2933 3.9027 2.1065 25 6 11.1267 4.2991 1.0458 26 6 10.8097 5.7927 0.9483 27 6 8.9521 3.6575 -0.0086 28 8 5.3812 1.0524 -0.0012 29 7 4.2639 0.5912 -0.0006 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.6292 3.7595 0.0091 36 1 7.0062 0.9017 0.6387 37 1 8.4541 0.8811 -0.3987 38 1 9.0914 0.2052 1.8708 39 1 8.3317 1.6646 2.5516 40 1 11.0054 2.5738 3.3311 41 1 13.2208 1.5086 5.5859 42 1 11.7883 4.1227 1.8940 43 1 11.6162 3.9709 0.1288 44 1 10.1482 5.9691 0.1001 45 1 10.3203 6.1209 1.8652 46 1 11.7350 6.3523 0.8104 47 1 8.6357 4.6951 -0.1153 48 1 9.5190 3.3559 -0.8893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037875871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:03 Heat of formation + Delta-G solvation = 8.017341 kcal Electronic energy + Delta-G solvation = -29835.137380 eV Core-core repulsion = 25701.719825 eV Total energy + Delta-G solvation = -4133.417555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.22126 -40.23129 -39.29605 -37.95973 -34.97703 -33.84239 -33.75306 -32.21058 -31.77331 -31.49660 -29.57248 -28.78497 -25.82779 -24.37498 -24.05063 -23.54125 -23.25265 -22.17821 -20.93898 -20.70814 -19.62007 -18.31404 -18.12558 -17.26189 -17.09650 -16.42157 -16.29114 -15.99082 -15.21673 -14.96660 -14.85697 -14.27998 -14.07158 -13.87793 -13.76272 -13.46956 -13.39127 -13.19846 -13.13237 -13.08249 -12.74986 -12.29056 -12.16475 -11.83383 -11.64658 -11.54523 -11.50416 -11.33258 -10.93795 -10.86864 -10.72073 -10.48607 -10.25973 -10.23272 -10.18051 -10.08746 -9.74737 -9.63226 -9.57166 -8.91776 -8.65616 -6.98687 -5.79094 -3.07981 0.55629 1.86039 2.29051 2.35716 2.81302 3.11103 3.41988 3.46973 3.47697 3.81648 4.28980 4.49488 4.50255 4.56032 4.58830 4.81968 4.90695 5.03896 5.15352 5.19681 5.20923 5.33288 5.33416 5.39998 5.44782 5.56321 5.57919 5.59069 5.62608 5.71532 5.81339 5.98304 6.07607 6.12522 6.27026 6.30642 6.34342 6.41965 6.48994 6.63069 6.66210 6.79791 6.91827 7.02198 7.19245 7.66955 7.71369 7.92961 8.38987 9.50561 10.07402 10.42209 11.43164 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.002747 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.977847 B =10188.891131 C =11898.503262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.208 3.792 5 C -0.157 4.157 6 C -0.050 4.050 7 C 0.601 3.399 8 O -0.517 6.517 9 N -0.588 5.588 10 C 0.096 3.904 11 C -0.151 4.151 12 C 0.183 3.817 13 H 0.050 0.950 14 N -0.719 5.719 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.292 1.292 21 H -0.286 1.286 22 H -0.286 1.286 23 C -0.105 4.105 24 H 0.072 0.928 25 C -0.112 4.112 26 C -0.153 4.153 27 C 0.119 3.881 28 O 0.119 5.881 29 N -0.394 5.394 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.189 0.811 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.094 0.906 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.785 1.200 -12.004 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.189 6.189 4 C 0.011 3.989 5 C -0.180 4.180 6 C -0.115 4.115 7 C 0.385 3.615 8 O -0.394 6.394 9 N -0.319 5.319 10 C -0.027 4.027 11 C -0.192 4.192 12 C 0.072 3.928 13 H 0.068 0.932 14 N -0.360 5.360 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.125 4.125 24 H 0.091 0.909 25 C -0.150 4.150 26 C -0.211 4.211 27 C -0.003 4.003 28 O 0.055 5.945 29 N -0.120 5.120 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.207 0.793 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.113 0.887 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.012 0.562 -12.068 22.526 hybrid contribution 0.359 -0.275 0.512 0.683 sum -18.654 0.287 -11.557 21.945 Atomic orbital electron populations 1.21800 0.92111 1.03267 1.03688 1.22853 0.95925 0.80464 1.02584 1.86215 1.12988 1.30368 1.89301 1.21803 0.85836 0.90426 1.00866 1.22158 0.90051 0.99260 1.06519 1.24082 0.96533 0.84296 1.06629 1.16594 0.80939 0.85849 0.78083 1.90854 1.84387 1.13124 1.51054 1.48110 1.05021 1.11422 1.67375 1.22313 1.01641 0.79262 0.99496 1.22703 0.97830 1.03126 0.95516 1.20209 0.89726 0.90979 0.91889 0.93200 1.42394 1.45752 1.26735 1.21082 1.19163 1.14706 0.99658 1.03499 0.91242 1.24725 1.00432 0.98444 0.97194 1.69645 1.42680 1.34916 1.10725 0.86305 0.80700 0.82505 0.76874 1.21785 1.21326 1.21299 1.21804 0.95929 0.97831 0.96983 0.90938 1.21452 0.96846 0.93409 1.03267 1.21853 1.00932 0.96929 1.01349 1.21916 0.84469 0.95355 0.98557 1.85135 1.22185 1.18712 1.68452 1.73988 0.90846 1.22581 1.24618 0.91296 0.91347 0.89899 0.91490 0.91403 0.79345 0.89143 0.90579 0.90151 0.92081 0.78161 0.93465 0.89655 0.92344 0.93203 0.92926 0.93127 0.88724 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.46 6.38 37.16 0.24 0.70 16 3 O -0.28 -3.06 10.21 -18.90 -0.19 -3.26 16 4 C 0.21 2.51 8.00 -16.72 -0.13 2.38 16 5 C -0.16 -1.83 10.98 -38.77 -0.43 -2.26 16 6 C -0.05 -0.63 6.90 -36.36 -0.25 -0.88 16 7 C 0.60 8.42 7.68 -12.47 -0.10 8.32 16 8 O -0.52 -8.32 16.34 5.30 0.09 -8.23 16 9 N -0.59 -7.93 2.97 -173.99 -0.52 -8.44 16 10 C 0.10 1.24 6.15 -3.71 -0.02 1.22 16 11 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 12 C 0.18 3.28 2.19 -67.89 -0.15 3.13 16 13 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 14 N -0.72 -16.66 4.33 -53.38 -0.23 -16.89 16 15 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 16 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 19 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.11 -1.63 1.92 -90.50 -0.17 -1.80 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 25 C -0.11 -1.70 5.31 -26.74 -0.14 -1.85 16 26 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 27 C 0.12 1.58 5.34 -3.71 -0.02 1.56 16 28 O 0.12 1.50 7.91 15.50 0.12 1.62 16 29 N -0.39 -5.04 11.50 30.47 0.35 -4.69 16 30 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.19 1.85 8.06 -52.48 -0.42 1.42 16 36 H 0.09 1.13 4.26 -52.63 -0.22 0.90 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.38 9.66 7.51 -40.82 -0.31 9.35 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.08 1.58 7.22 -51.93 -0.37 1.21 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.59 6.70 -51.93 -0.35 0.24 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 47 H 0.09 1.28 5.72 -51.93 -0.30 0.98 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -30.02 388.61 -7.09 -37.11 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.43 Total: 7.66 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.83 Total: -0.97 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.33 Total: -56.53 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.02 Total: -9.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.02 -7.09 -37.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037875871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.131 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds