Wall clock time and date at job start Tue Mar 31 2020 20:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42893 * 109.47168 * 2 1 4 4 C 1.35733 * 116.99941 * 180.02562 * 3 2 1 5 5 C 1.41851 * 126.78771 * 179.97438 * 4 3 2 6 6 C 1.36658 * 103.81417 * 180.02562 * 5 4 3 7 7 C 1.47535 * 126.88142 * 180.02562 * 6 5 4 8 8 O 1.21580 * 120.00290 * 353.49042 * 7 6 5 9 9 N 1.34778 * 120.00472 * 173.49013 * 7 6 5 10 10 C 1.47000 * 120.61118 * 354.67948 * 9 7 6 11 11 C 1.53192 * 108.73779 * 126.38539 * 10 9 7 12 12 C 1.53042 * 109.34070 * 54.62447 * 11 10 9 13 13 H 1.09000 * 109.45831 * 58.61774 * 12 11 10 14 14 N 1.46500 * 109.46051 * 178.59678 * 12 11 10 15 15 C 1.36934 * 119.99840 * 274.99854 * 14 12 11 16 16 H 1.08004 * 120.00217 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99901 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99823 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00038 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47312 * 60.00121 * 19 17 15 21 21 H 1.48503 * 109.47285 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47039 * 300.00024 * 19 17 15 23 23 C 1.53045 * 109.53353 * 298.61558 * 12 11 10 24 24 H 1.08998 * 109.49970 * 301.41336 * 23 12 11 25 25 C 1.53003 * 109.49495 * 181.34854 * 23 12 11 26 26 C 1.52994 * 109.47131 * 174.99926 * 25 23 12 27 27 C 1.46922 * 120.63561 * 174.65320 * 9 7 6 28 28 O 1.34662 * 106.23980 * 0.25622 * 6 5 4 29 29 N 1.20876 * 111.63060 * 359.53391 * 28 6 5 30 30 H 1.09006 * 109.47350 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47035 * 300.00519 * 1 2 3 32 32 H 1.08995 * 109.46903 * 60.00210 * 1 2 3 33 33 H 1.09000 * 109.47035 * 239.99481 * 2 1 3 34 34 H 1.09007 * 109.46520 * 119.99600 * 2 1 3 35 35 H 1.08003 * 128.09195 * 359.97438 * 5 4 3 36 36 H 1.09000 * 109.62763 * 6.59229 * 10 9 7 37 37 H 1.08996 * 109.57948 * 246.14761 * 10 9 7 38 38 H 1.09001 * 109.49728 * 294.64822 * 11 10 9 39 39 H 1.08998 * 109.49617 * 174.58889 * 11 10 9 40 40 H 0.97000 * 119.99509 * 94.99470 * 14 12 11 41 41 H 0.97001 * 120.00080 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.47376 * 295.00245 * 25 23 12 43 43 H 1.09000 * 109.47104 * 55.00211 * 25 23 12 44 44 H 1.09004 * 109.47251 * 300.00395 * 26 25 23 45 45 H 1.09000 * 109.46894 * 60.00156 * 26 25 23 46 46 H 1.09000 * 109.47317 * 180.02562 * 26 25 23 47 47 H 1.09000 * 109.59053 * 113.84263 * 27 9 7 48 48 H 1.09001 * 109.70446 * 353.48743 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5250 -0.0005 5 6 4.0453 2.7626 -0.0012 6 6 5.3626 2.3986 -0.0021 7 6 6.5303 3.3003 -0.0025 8 8 6.3721 4.4998 -0.1214 9 7 7.7726 2.7943 0.1288 10 6 7.9736 1.3616 0.3896 11 6 8.9314 0.7990 -0.6653 12 6 10.2203 1.6240 -0.6710 13 1 10.6762 1.5923 0.3186 14 7 11.1516 1.0677 -1.6556 15 6 11.9735 0.0285 -1.3097 16 1 11.9355 -0.3808 -0.3109 17 6 12.8555 -0.4991 -2.2428 18 7 12.9021 -0.0001 -3.4598 19 14 13.9772 -1.9162 -1.7708 20 1 13.1551 -3.0811 -1.3557 21 1 14.8167 -2.2925 -2.9365 22 1 14.8520 -1.5013 -0.6448 23 6 9.8978 3.0746 -1.0371 24 1 9.4191 3.1050 -2.0159 25 6 11.1911 3.8913 -1.0755 26 6 10.8847 5.3090 -1.5620 27 6 8.9512 3.6638 0.0135 28 8 5.3812 1.0521 -0.0078 29 7 4.2639 0.5910 -0.0011 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.6294 3.7593 -0.0017 36 1 7.0178 0.8410 0.3302 37 1 8.4037 1.2279 1.3822 38 1 8.4618 0.8507 -1.6476 39 1 9.1649 -0.2389 -0.4279 40 1 11.1859 1.4355 -2.5525 41 1 13.5187 -0.3684 -4.1118 42 1 11.6227 3.9356 -0.0755 43 1 11.8991 3.4186 -1.7562 44 1 10.4531 5.2647 -2.5620 45 1 10.1767 5.7817 -0.8813 46 1 11.8061 5.8907 -1.5898 47 1 9.4611 3.7178 0.9754 48 1 8.6421 4.6632 -0.2928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037875875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:06 Heat of formation + Delta-G solvation = 10.749433 kcal Electronic energy + Delta-G solvation = -29898.465346 eV Core-core repulsion = 25765.166264 eV Total energy + Delta-G solvation = -4133.299082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.20652 -40.22834 -39.28217 -37.96803 -34.98162 -33.84775 -33.73936 -32.19731 -31.76836 -31.49466 -29.56638 -28.78412 -25.83243 -24.36540 -24.05386 -23.53392 -23.25541 -22.16421 -20.95427 -20.71561 -19.58791 -18.33698 -18.07542 -17.29814 -17.10880 -16.41236 -16.25923 -15.99247 -15.15301 -15.04666 -14.82751 -14.31547 -14.14302 -13.88777 -13.74033 -13.46832 -13.37372 -13.16572 -13.07772 -13.07632 -12.72417 -12.27841 -12.17716 -11.82194 -11.62297 -11.52887 -11.49744 -11.33531 -10.93037 -10.86672 -10.71062 -10.48855 -10.26135 -10.23152 -10.18025 -10.07698 -9.74264 -9.63831 -9.56675 -8.91352 -8.66012 -6.98414 -5.78882 -3.07706 0.56432 1.87750 2.29481 2.35040 2.84594 3.10109 3.42147 3.47118 3.47845 3.82384 4.27165 4.50831 4.51126 4.56149 4.59981 4.83117 4.91218 5.05347 5.15131 5.20229 5.21832 5.32823 5.34441 5.40459 5.45318 5.56560 5.58394 5.59144 5.62603 5.73349 5.81044 5.99189 6.07064 6.12416 6.28112 6.30521 6.34203 6.41729 6.49220 6.63040 6.67976 6.80109 6.91621 7.02785 7.18937 7.67129 7.72483 7.95147 8.39193 9.50788 10.07590 10.42443 11.43397 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.002827 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.230854 B = 9901.150055 C =11681.559348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.208 3.792 5 C -0.157 4.157 6 C -0.050 4.050 7 C 0.601 3.399 8 O -0.518 6.518 9 N -0.588 5.588 10 C 0.093 3.907 11 C -0.150 4.150 12 C 0.182 3.818 13 H 0.050 0.950 14 N -0.719 5.719 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.106 4.106 24 H 0.072 0.928 25 C -0.111 4.111 26 C -0.154 4.154 27 C 0.120 3.880 28 O 0.119 5.881 29 N -0.394 5.394 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.189 0.811 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.419 5.156 8.610 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.189 6.189 4 C 0.010 3.990 5 C -0.180 4.180 6 C -0.116 4.116 7 C 0.385 3.615 8 O -0.395 6.395 9 N -0.319 5.319 10 C -0.030 4.030 11 C -0.191 4.191 12 C 0.072 3.928 13 H 0.068 0.932 14 N -0.359 5.359 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.126 4.126 24 H 0.090 0.910 25 C -0.150 4.150 26 C -0.211 4.211 27 C -0.002 4.002 28 O 0.057 5.943 29 N -0.120 5.120 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.206 0.794 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.645 4.532 8.612 21.924 hybrid contribution 0.394 -0.399 -0.153 0.581 sum -19.251 4.134 8.459 21.431 Atomic orbital electron populations 1.21798 0.92123 1.03266 1.03662 1.22852 0.95904 0.80470 1.02613 1.86208 1.13002 1.30371 1.89326 1.21797 0.85828 0.90419 1.00929 1.22147 0.90035 0.99239 1.06564 1.24086 0.96511 0.84340 1.06661 1.16610 0.80960 0.85903 0.78006 1.90851 1.84469 1.13188 1.51019 1.48134 1.05007 1.10620 1.68131 1.22422 1.01636 0.78715 1.00264 1.22692 0.97114 1.01562 0.97749 1.20212 0.89198 0.89187 0.94224 0.93229 1.42389 1.42497 1.39559 1.11501 1.19161 1.12971 1.08285 0.96589 0.91250 1.24724 1.00206 0.99947 0.95908 1.69644 1.40470 1.44107 1.03755 0.86307 0.80626 0.82431 0.77030 1.21316 1.21787 1.21314 1.21815 0.95474 0.96687 0.98616 0.90968 1.21452 0.97053 0.94222 1.02228 1.21855 1.00940 0.97248 1.01049 1.21907 0.84255 0.94228 0.99820 1.85128 1.21964 1.18663 1.68587 1.74001 0.90934 1.22689 1.24410 0.89897 0.91361 0.91313 0.91404 0.91470 0.79367 0.88715 0.90637 0.91986 0.90174 0.78162 0.93467 0.92328 0.89632 0.92946 0.93189 0.93103 0.90866 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.47 6.38 37.16 0.24 0.71 16 3 O -0.28 -3.09 10.21 -18.91 -0.19 -3.29 16 4 C 0.21 2.53 8.00 -16.72 -0.13 2.40 16 5 C -0.16 -1.84 10.97 -38.77 -0.43 -2.26 16 6 C -0.05 -0.64 6.96 -36.36 -0.25 -0.90 16 7 C 0.60 8.44 7.69 -12.47 -0.10 8.34 16 8 O -0.52 -8.30 16.36 5.30 0.09 -8.22 16 9 N -0.59 -7.93 2.97 -173.94 -0.52 -8.45 16 10 C 0.09 1.20 6.34 -3.67 -0.02 1.18 16 11 C -0.15 -2.43 5.66 -26.61 -0.15 -2.58 16 12 C 0.18 3.27 2.19 -67.89 -0.15 3.12 16 13 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 14 N -0.72 -16.64 4.33 -53.38 -0.23 -16.87 16 15 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 16 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 19 Si 0.90 21.77 29.55 -169.99 -5.02 16.74 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.11 -1.63 1.92 -90.50 -0.17 -1.80 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 C -0.11 -1.70 5.31 -26.73 -0.14 -1.84 16 26 C -0.15 -1.99 9.67 37.15 0.36 -1.64 16 27 C 0.12 1.60 5.31 -3.71 -0.02 1.58 16 28 O 0.12 1.55 7.79 15.50 0.12 1.67 16 29 N -0.39 -5.16 11.50 30.47 0.35 -4.81 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.19 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.10 1.18 3.85 -54.44 -0.21 0.97 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.38 9.65 7.51 -40.82 -0.31 9.34 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.58 7.22 -51.93 -0.37 1.21 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.59 6.70 -51.93 -0.35 0.24 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.09 1.27 5.76 -51.93 -0.30 0.97 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -30.03 388.37 -7.09 -37.11 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.42 Total: 7.72 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.83 Total: -0.97 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.33 Total: -56.63 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.01 Total: -9.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.03 -7.09 -37.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037875875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.861 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds