Wall clock time and date at job start Tue Mar 31 2020 20:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47257 * 2 1 4 4 C 1.35353 * 117.00326 * 180.02562 * 3 2 1 5 5 N 1.30546 * 125.44830 * 179.97438 * 4 3 2 6 6 C 1.36331 * 108.38203 * 179.97438 * 5 4 3 7 7 C 1.47366 * 126.40900 * 179.73400 * 6 5 4 8 8 O 1.21622 * 119.99722 * 187.61031 * 7 6 5 9 9 N 1.34780 * 120.00273 * 7.60751 * 7 6 5 10 10 C 1.46923 * 120.62913 * 6.96865 * 9 7 6 11 11 C 1.53195 * 108.77534 * 126.36786 * 10 9 7 12 12 C 1.53039 * 109.30834 * 54.63452 * 11 10 9 13 13 H 1.08998 * 109.45756 * 178.62974 * 12 11 10 14 14 N 1.46496 * 109.46069 * 58.65842 * 12 11 10 15 15 C 1.36942 * 120.00168 * 84.99864 * 14 12 11 16 16 H 1.07991 * 119.99897 * 359.97438 * 15 14 12 17 17 C 1.38806 * 119.99734 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00408 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99737 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47329 * 90.00053 * 19 17 15 21 21 H 1.48508 * 109.46970 * 210.00004 * 19 17 15 22 22 H 1.48497 * 109.47040 * 329.99417 * 19 17 15 23 23 C 1.53043 * 109.54294 * 298.63300 * 12 11 10 24 24 H 1.08998 * 109.49305 * 301.38581 * 23 12 11 25 25 C 1.52993 * 109.49841 * 181.31889 * 23 12 11 26 26 C 1.53003 * 109.46993 * 174.99782 * 25 23 12 27 27 C 1.46928 * 120.62963 * 186.68766 * 9 7 6 28 28 C 1.35908 * 107.17427 * 0.02562 * 6 5 4 29 29 O 1.34208 * 125.44242 * 359.96950 * 4 3 2 30 30 H 1.09004 * 109.47212 * 300.00064 * 1 2 3 31 31 H 1.09003 * 109.47193 * 60.00547 * 1 2 3 32 32 H 1.09005 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47212 * 239.99936 * 2 1 3 34 34 H 1.08994 * 109.47258 * 119.99657 * 2 1 3 35 35 H 1.09001 * 109.58628 * 246.15894 * 10 9 7 36 36 H 1.08998 * 109.58845 * 6.58296 * 10 9 7 37 37 H 1.08994 * 109.49747 * 174.58835 * 11 10 9 38 38 H 1.08997 * 109.49464 * 294.65396 * 11 10 9 39 39 H 0.97001 * 119.99822 * 264.98911 * 14 12 11 40 40 H 0.97006 * 120.00233 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.47313 * 294.99893 * 25 23 12 42 42 H 1.09007 * 109.47152 * 55.00340 * 25 23 12 43 43 H 1.09007 * 109.46716 * 60.00291 * 26 25 23 44 44 H 1.08994 * 109.47420 * 179.97438 * 26 25 23 45 45 H 1.08997 * 109.47182 * 300.00192 * 26 25 23 46 46 H 1.09004 * 109.58696 * 353.42028 * 27 9 7 47 47 H 1.09003 * 109.58232 * 113.84673 * 27 9 7 48 48 H 1.08003 * 126.45632 * 179.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 -0.0011 6 6 5.3039 2.4524 -0.0009 7 6 6.3629 3.4771 -0.0069 8 8 7.5258 3.1489 -0.1456 9 7 6.0429 4.7779 0.1412 10 6 4.6660 5.1783 0.4611 11 6 4.6884 6.0690 1.7074 12 6 5.6457 7.2401 1.4752 13 1 5.6451 7.8887 2.3512 14 7 5.2089 8.0026 0.3031 15 6 4.2569 8.9779 0.4365 16 1 3.8279 9.1847 1.4057 17 6 3.8435 9.7007 -0.6741 18 7 4.3667 9.4490 -1.8553 19 14 2.5444 11.0307 -0.4923 20 1 3.2029 12.3295 -0.2015 21 1 1.7684 11.1405 -1.7537 22 1 1.6289 10.6792 0.6229 23 6 7.0601 6.7059 1.2379 24 1 7.3763 6.1183 2.0997 25 6 8.0222 7.8787 1.0385 26 6 9.4537 7.3504 0.9258 27 6 7.0657 5.8221 -0.0081 28 6 5.4845 1.1053 -0.0008 29 8 4.2630 0.5427 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 4.2426 5.7325 -0.3766 36 1 4.0636 4.2913 0.6568 37 1 3.6859 6.4511 1.8995 38 1 5.0263 5.4867 2.5646 39 1 5.5941 7.8167 -0.5676 40 1 4.0780 9.9544 -2.6314 41 1 7.7592 8.4133 0.1258 42 1 7.9509 8.5559 1.8897 43 1 9.5251 6.6732 0.0746 44 1 10.1391 8.1858 0.7833 45 1 9.7167 6.8158 1.8385 46 1 8.0462 5.3596 -0.1220 47 1 6.8420 6.4300 -0.8848 48 1 6.4308 0.5847 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037880481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:48 Heat of formation + Delta-G solvation = -24.212637 kcal Electronic energy + Delta-G solvation = -30428.071404 eV Core-core repulsion = 26293.256253 eV Total energy + Delta-G solvation = -4134.815151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.59634 -39.91319 -39.16591 -37.72047 -35.27323 -34.11002 -33.65527 -32.29463 -31.59202 -29.73790 -29.28573 -28.45644 -25.64488 -24.18181 -23.72783 -23.54124 -23.04922 -22.34286 -20.69846 -20.27730 -18.83550 -17.98121 -17.76033 -17.25287 -16.98414 -16.55383 -15.89454 -15.69789 -15.16606 -14.97793 -14.48799 -14.32510 -13.90950 -13.64202 -13.58586 -13.30215 -13.23696 -13.14820 -13.08743 -12.86202 -12.47681 -12.17569 -12.16124 -11.86539 -11.65865 -11.34814 -11.16114 -11.01801 -10.95542 -10.79920 -10.66672 -10.34698 -10.20625 -10.12527 -10.09763 -9.69156 -9.52463 -9.42325 -8.87078 -8.77221 -8.10320 -6.87850 -5.71013 -2.98648 1.02823 1.70524 1.96881 2.53534 3.24653 3.39878 3.47017 3.52663 3.53897 4.33286 4.38014 4.38731 4.64547 4.69592 4.75769 4.87673 5.20729 5.25311 5.29488 5.34476 5.36187 5.45112 5.54300 5.59362 5.65336 5.73548 5.78024 5.88881 5.92091 5.97675 6.06919 6.19458 6.26836 6.36399 6.44618 6.45964 6.54391 6.63326 6.72247 6.77589 6.90826 6.93875 7.07717 7.14794 7.39660 7.76263 7.79258 8.34261 8.47579 9.59123 10.16797 10.51976 11.51582 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.003725 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.142408 B = 7514.351852 C = 9842.082565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.380 3.620 5 N -0.443 5.443 6 C -0.034 4.034 7 C 0.595 3.405 8 O -0.551 6.551 9 N -0.578 5.578 10 C 0.089 3.911 11 C -0.148 4.148 12 C 0.177 3.823 13 H 0.049 0.951 14 N -0.718 5.718 15 C -0.234 4.234 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.903 3.097 20 H -0.292 1.292 21 H -0.293 1.293 22 H -0.283 1.283 23 C -0.102 4.102 24 H 0.066 0.934 25 C -0.110 4.110 26 C -0.153 4.153 27 C 0.117 3.883 28 C -0.006 4.006 29 O -0.228 6.228 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 -20.585 5.417 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.152 6.152 4 C 0.135 3.865 5 N -0.189 5.189 6 C -0.153 4.153 7 C 0.382 3.618 8 O -0.431 6.431 9 N -0.307 5.307 10 C -0.033 4.033 11 C -0.189 4.189 12 C 0.067 3.933 13 H 0.067 0.933 14 N -0.360 5.360 15 C -0.365 4.365 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.735 3.265 20 H -0.219 1.219 21 H -0.220 1.220 22 H -0.209 1.209 23 C -0.122 4.122 24 H 0.084 0.916 25 C -0.148 4.148 26 C -0.210 4.210 27 C -0.005 4.005 28 C -0.078 4.078 29 O -0.120 6.120 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.105 0.895 47 H 0.095 0.905 48 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.767 -19.956 5.379 20.682 hybrid contribution -0.510 -0.048 -0.248 0.569 sum -1.276 -20.004 5.131 20.691 Atomic orbital electron populations 1.21814 0.91244 1.03534 1.04396 1.23041 0.96898 0.79498 1.02909 1.86422 1.09029 1.30629 1.89099 1.23718 0.83424 0.81796 0.97608 1.71304 1.04018 1.19844 1.23755 1.21779 0.90199 0.93969 1.09356 1.16730 0.85851 0.81681 0.77556 1.90781 1.18379 1.81092 1.52827 1.47975 1.11918 1.04518 1.66268 1.22567 0.80742 1.01231 0.98774 1.22519 1.02152 0.98116 0.96131 1.20247 0.89811 0.91253 0.91984 0.93313 1.42456 1.47431 1.40774 1.05352 1.19217 1.13531 1.09820 0.93956 0.91313 1.24679 1.00409 1.00190 0.95517 1.69650 1.46155 1.43796 0.98515 0.86249 0.81487 0.82148 0.76649 1.21934 1.21956 1.20879 1.21661 0.97121 0.96149 0.97309 0.91597 1.21417 0.92943 0.97040 1.03369 1.21856 0.97204 1.00685 1.01295 1.21687 0.91567 0.88430 0.98771 1.24869 0.85742 0.92802 1.04401 1.84370 1.16260 1.39271 1.72072 0.90884 0.90849 0.89551 0.90863 0.90887 0.90104 0.86046 0.90869 0.93777 0.78136 0.93634 0.90467 0.92019 0.92780 0.93202 0.93379 0.89520 0.90476 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.15 0.38 -0.40 16 2 C 0.05 0.35 6.38 37.15 0.24 0.59 16 3 O -0.24 -2.77 10.19 -40.98 -0.42 -3.18 16 4 C 0.38 4.93 8.98 52.22 0.47 5.40 16 5 N -0.44 -6.91 7.88 -11.72 -0.09 -7.01 16 6 C -0.03 -0.52 6.66 -82.99 -0.55 -1.07 16 7 C 0.60 10.35 7.67 -12.54 -0.10 10.25 16 8 O -0.55 -10.25 16.32 5.26 0.09 -10.17 16 9 N -0.58 -10.39 2.98 -174.32 -0.52 -10.91 16 10 C 0.09 1.65 5.84 -3.71 -0.02 1.63 16 11 C -0.15 -2.73 5.78 -26.61 -0.15 -2.88 16 12 C 0.18 3.49 2.53 -67.89 -0.17 3.32 16 13 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 14 N -0.72 -17.15 3.72 -53.39 -0.20 -17.35 16 15 C -0.23 -6.29 9.93 -15.06 -0.15 -6.44 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 19 Si 0.90 22.32 29.55 -169.99 -5.02 17.29 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.10 -1.76 2.12 -90.73 -0.19 -1.95 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 25 C -0.11 -1.81 5.19 -26.73 -0.14 -1.95 16 26 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 27 C 0.12 2.09 5.02 -3.93 -0.02 2.07 16 28 C -0.01 -0.07 11.94 29.90 0.36 0.29 16 29 O -0.23 -2.53 10.20 -17.76 -0.18 -2.71 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 1.76 7.74 -51.93 -0.40 1.36 16 36 H 0.12 2.18 4.12 -59.76 -0.25 1.94 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.38 9.81 5.95 -40.82 -0.24 9.57 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.08 1.47 7.70 -51.93 -0.40 1.07 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.50 5.71 -51.93 -0.30 1.21 16 47 H 0.08 1.52 6.64 -51.93 -0.34 1.17 16 48 H 0.23 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -31.94 385.12 -6.93 -38.87 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.32 Total: 9.72 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 0.21 Total: 6.65 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.09 Total: -62.27 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.51 Total: -16.06 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.94 -6.93 -38.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037880481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.658 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds