Wall clock time and date at job start Tue Mar 31 2020 20:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47138 * 2 1 4 4 C 1.35356 * 116.99987 * 179.97438 * 3 2 1 5 5 N 1.30548 * 125.44353 * 180.34575 * 4 3 2 6 6 C 1.36338 * 108.37872 * 180.16738 * 5 4 3 7 7 C 1.47371 * 126.41010 * 179.82789 * 6 5 4 8 8 O 1.21614 * 119.99976 * 172.43016 * 7 6 5 9 9 N 1.34776 * 120.00130 * 352.42724 * 7 6 5 10 10 C 1.46923 * 120.62979 * 352.84672 * 9 7 6 11 11 C 1.53192 * 108.77427 * 233.58486 * 10 9 7 12 12 C 1.53037 * 109.31442 * 305.36304 * 11 10 9 13 13 H 1.09000 * 109.46089 * 181.38307 * 12 11 10 14 14 N 1.46494 * 109.46152 * 301.34517 * 12 11 10 15 15 C 1.36939 * 120.00205 * 275.06566 * 14 12 11 16 16 H 1.07992 * 120.00016 * 0.02562 * 15 14 12 17 17 C 1.38810 * 119.99806 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00399 * 0.02562 * 17 15 14 19 19 Si 1.86811 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46696 * 60.00155 * 19 17 15 21 21 H 1.48494 * 109.46995 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47055 * 300.00213 * 19 17 15 23 23 C 1.53039 * 109.53450 * 61.36728 * 12 11 10 24 24 H 1.08994 * 109.52818 * 58.60369 * 23 12 11 25 25 C 1.53001 * 109.49758 * 178.68156 * 23 12 11 26 26 C 1.53001 * 109.47244 * 184.83411 * 25 23 12 27 27 C 1.46924 * 120.63139 * 172.82166 * 9 7 6 28 28 C 1.35906 * 107.17454 * 359.56576 * 6 5 4 29 29 O 1.34201 * 125.44455 * 0.03301 * 4 3 2 30 30 H 1.09003 * 109.47232 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46885 * 299.99424 * 1 2 3 32 32 H 1.08997 * 109.47557 * 59.99759 * 1 2 3 33 33 H 1.09004 * 109.47013 * 240.00040 * 2 1 3 34 34 H 1.08994 * 109.47191 * 120.00603 * 2 1 3 35 35 H 1.08997 * 109.58859 * 353.37253 * 10 9 7 36 36 H 1.09002 * 109.58789 * 113.79839 * 10 9 7 37 37 H 1.09003 * 109.50053 * 65.32244 * 11 10 9 38 38 H 1.09003 * 109.49651 * 185.38302 * 11 10 9 39 39 H 0.97009 * 120.00307 * 95.06833 * 14 12 11 40 40 H 0.97008 * 120.00031 * 179.97438 * 18 17 15 41 41 H 1.09010 * 109.47005 * 64.83802 * 25 23 12 42 42 H 1.08996 * 109.47584 * 304.84023 * 25 23 12 43 43 H 1.08996 * 109.47637 * 300.00315 * 26 25 23 44 44 H 1.08998 * 109.46769 * 179.97438 * 26 25 23 45 45 H 1.09001 * 109.46588 * 60.00204 * 26 25 23 46 46 H 1.09000 * 109.58369 * 6.63005 * 27 9 7 47 47 H 1.08994 * 109.70638 * 246.27396 * 27 9 7 48 48 H 1.08002 * 126.46050 * 180.26035 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9594 2.6782 0.0070 6 6 5.3039 2.4523 0.0014 7 6 6.3630 3.4770 0.0021 8 8 7.5265 3.1490 0.1355 9 7 6.0423 4.7778 -0.1451 10 6 4.6648 5.1778 -0.4628 11 6 4.6851 6.0698 -1.7080 12 6 5.6421 7.2413 -1.4758 13 1 5.6398 7.8910 -2.3510 14 7 5.2064 8.0023 -0.3023 15 6 4.2527 8.9762 -0.4331 16 1 3.8215 9.1831 -1.4014 17 6 3.8395 9.6968 0.6790 18 7 4.3647 9.4444 1.8591 19 14 2.5391 11.0260 0.5004 20 1 1.2862 10.4253 -0.0237 21 1 2.2764 11.6427 1.8254 22 1 3.0213 12.0668 -0.4426 23 6 7.0570 6.7075 -1.2409 24 1 7.3729 6.1207 -2.1034 25 6 8.0188 7.8806 -1.0416 26 6 9.4503 7.3526 -0.9270 27 6 7.0635 5.8227 0.0097 28 6 5.4846 1.1053 0.0011 29 8 4.2630 0.5427 0.0004 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.0626 4.2906 -0.6586 36 1 4.2422 5.7309 0.3761 37 1 5.0227 5.4888 -2.5663 38 1 3.6820 6.4512 -1.8987 39 1 5.5934 7.8162 0.5676 40 1 4.0762 9.9483 2.6363 41 1 7.7549 8.4158 -0.1293 42 1 7.9481 8.5572 -1.8931 43 1 9.5210 6.6760 -0.0754 44 1 10.1355 8.1884 -0.7855 45 1 9.7141 6.8174 -1.8392 46 1 8.0441 5.3610 0.1255 47 1 6.8391 6.4288 0.8873 48 1 6.4308 0.5847 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037880485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:51 Heat of formation + Delta-G solvation = -24.129781 kcal Electronic energy + Delta-G solvation = -30428.100038 eV Core-core repulsion = 26293.288480 eV Total energy + Delta-G solvation = -4134.811558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.59519 -39.90546 -39.16399 -37.71159 -35.27064 -34.10866 -33.64580 -32.29339 -31.59089 -29.73622 -29.28261 -28.44253 -25.64600 -24.17868 -23.72622 -23.53706 -23.04763 -22.34036 -20.69649 -20.27281 -18.83471 -17.98083 -17.75963 -17.24963 -16.98262 -16.55211 -15.89449 -15.69521 -15.16459 -14.97874 -14.48881 -14.31657 -13.91078 -13.63949 -13.58395 -13.30121 -13.23376 -13.14697 -13.08924 -12.86130 -12.46590 -12.17277 -12.15797 -11.86124 -11.65812 -11.34725 -11.15780 -11.01917 -10.95651 -10.77992 -10.66686 -10.34500 -10.20844 -10.14239 -10.10446 -9.69091 -9.52538 -9.42124 -8.86904 -8.76651 -8.10110 -6.87729 -5.70689 -2.98346 1.02864 1.70645 1.96885 2.53688 3.24937 3.39841 3.47765 3.52639 3.53086 4.33358 4.38074 4.38813 4.64762 4.69674 4.75845 4.87744 5.20737 5.25369 5.29568 5.34663 5.36223 5.45332 5.54512 5.59463 5.65489 5.73665 5.78120 5.88624 5.92128 5.97686 6.06982 6.19597 6.27054 6.36560 6.44688 6.46144 6.54478 6.63460 6.72371 6.77654 6.90927 6.93864 7.07847 7.14844 7.39755 7.75967 7.79315 8.34283 8.47915 9.59357 10.17075 10.52256 11.51829 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.003728 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.812359 B = 7509.927953 C = 9838.605413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.243 6.243 4 C 0.379 3.621 5 N -0.443 5.443 6 C -0.035 4.035 7 C 0.595 3.405 8 O -0.551 6.551 9 N -0.578 5.578 10 C 0.089 3.911 11 C -0.148 4.148 12 C 0.177 3.823 13 H 0.049 0.951 14 N -0.718 5.718 15 C -0.235 4.235 16 H 0.068 0.932 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.288 1.288 23 C -0.102 4.102 24 H 0.066 0.934 25 C -0.110 4.110 26 C -0.153 4.153 27 C 0.117 3.883 28 C -0.006 4.006 29 O -0.228 6.228 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.047 0.953 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -20.540 -5.388 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.152 6.152 4 C 0.134 3.866 5 N -0.189 5.189 6 C -0.153 4.153 7 C 0.382 3.618 8 O -0.431 6.431 9 N -0.307 5.307 10 C -0.033 4.033 11 C -0.189 4.189 12 C 0.067 3.933 13 H 0.067 0.933 14 N -0.360 5.360 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.215 1.215 23 C -0.122 4.122 24 H 0.084 0.916 25 C -0.148 4.148 26 C -0.210 4.210 27 C -0.005 4.005 28 C -0.078 4.078 29 O -0.120 6.120 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.105 0.895 47 H 0.095 0.905 48 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.744 -19.902 -5.341 20.619 hybrid contribution -0.523 -0.059 0.241 0.579 sum -1.267 -19.961 -5.100 20.641 Atomic orbital electron populations 1.21814 0.91244 1.03533 1.04396 1.23041 0.96898 0.79502 1.02908 1.86422 1.09027 1.30624 1.89101 1.23714 0.83426 0.81797 0.97620 1.71313 1.04015 1.19849 1.23735 1.21784 0.90206 0.93970 1.09354 1.16728 0.85859 0.81690 0.77534 1.90778 1.18339 1.81093 1.52856 1.47971 1.11953 1.04500 1.66273 1.22557 0.80712 1.01197 0.98801 1.22520 1.02144 0.98120 0.96130 1.20245 0.89824 0.91255 0.91968 0.93320 1.42449 1.47262 1.40931 1.05361 1.19173 1.13481 1.10023 0.93943 0.91369 1.24678 1.00370 1.00190 0.95515 1.69640 1.46048 1.43941 0.98506 0.86325 0.81800 0.81983 0.76403 1.21401 1.21869 1.21458 1.21738 0.97086 0.96124 0.97247 0.91571 1.21421 0.92959 0.97057 1.03363 1.21854 0.97204 1.00677 1.01296 1.21771 0.91583 0.88393 0.98713 1.24871 0.85739 0.92803 1.04402 1.84370 1.16260 1.39272 1.72074 0.89552 0.90851 0.90884 0.90885 0.90867 0.86091 0.90108 0.93780 0.90876 0.78134 0.93581 0.90465 0.92032 0.92775 0.93209 0.93389 0.89535 0.90453 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.05 0.35 6.38 37.16 0.24 0.59 16 3 O -0.24 -2.77 10.19 -40.99 -0.42 -3.19 16 4 C 0.38 4.94 8.98 52.22 0.47 5.40 16 5 N -0.44 -6.92 7.88 -11.71 -0.09 -7.01 16 6 C -0.03 -0.52 6.66 -82.98 -0.55 -1.07 16 7 C 0.60 10.35 7.67 -12.54 -0.10 10.26 16 8 O -0.55 -10.25 16.32 5.26 0.09 -10.17 16 9 N -0.58 -10.40 2.97 -174.06 -0.52 -10.92 16 10 C 0.09 1.66 5.83 -3.71 -0.02 1.64 16 11 C -0.15 -2.73 5.78 -26.61 -0.15 -2.88 16 12 C 0.18 3.49 2.53 -67.89 -0.17 3.32 16 13 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 14 N -0.72 -17.16 3.72 -53.39 -0.20 -17.36 16 15 C -0.23 -6.32 9.93 -15.06 -0.15 -6.47 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 19 Si 0.90 22.31 29.55 -169.99 -5.02 17.29 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.10 -1.75 2.14 -90.50 -0.19 -1.94 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 C -0.11 -1.82 5.19 -26.73 -0.14 -1.96 16 26 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 27 C 0.12 2.09 5.03 -3.71 -0.02 2.07 16 28 C -0.01 -0.07 11.94 29.90 0.36 0.29 16 29 O -0.23 -2.53 10.20 -17.76 -0.18 -2.71 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.12 2.18 4.13 -59.26 -0.24 1.93 16 36 H 0.08 1.77 7.74 -51.93 -0.40 1.36 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.38 9.81 5.94 -40.82 -0.24 9.57 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.08 1.47 7.69 -51.92 -0.40 1.07 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.50 5.72 -51.93 -0.30 1.20 16 47 H 0.08 1.52 6.64 -51.93 -0.35 1.18 16 48 H 0.23 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -31.92 385.13 -6.92 -38.84 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.32 Total: 9.77 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 0.21 Total: 6.65 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.08 Total: -62.29 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.51 Total: -16.07 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.92 -6.92 -38.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037880485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.710 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds