Wall clock time and date at job start Tue Mar 31 2020 20:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47424 * 2 1 4 4 C 1.35350 * 117.00220 * 179.97438 * 3 2 1 5 5 N 1.30552 * 125.44685 * 180.31723 * 4 3 2 6 6 C 1.36332 * 108.38184 * 180.15400 * 5 4 3 7 7 C 1.47368 * 126.41438 * 179.86053 * 6 5 4 8 8 O 1.21619 * 120.00363 * 172.42552 * 7 6 5 9 9 N 1.34779 * 119.99878 * 352.43385 * 7 6 5 10 10 C 1.46927 * 120.62876 * 352.79258 * 9 7 6 11 11 C 1.53195 * 108.77598 * 233.63296 * 10 9 7 12 12 C 1.53036 * 109.31584 * 305.37073 * 11 10 9 13 13 H 1.08999 * 109.44494 * 301.34897 * 12 11 10 14 14 N 1.46500 * 109.46004 * 181.38583 * 12 11 10 15 15 C 1.36941 * 120.00158 * 84.92982 * 14 12 11 16 16 H 1.07998 * 119.99712 * 359.97438 * 15 14 12 17 17 C 1.38807 * 119.99745 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00391 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99793 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47350 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47171 * 300.00263 * 19 17 15 22 22 H 1.48498 * 109.47005 * 60.00068 * 19 17 15 23 23 C 1.53044 * 109.54038 * 61.36036 * 12 11 10 24 24 H 1.09001 * 109.49428 * 58.58829 * 23 12 11 25 25 C 1.52998 * 109.49571 * 178.68498 * 23 12 11 26 26 C 1.52999 * 109.46685 * 185.00163 * 25 23 12 27 27 C 1.46922 * 120.63172 * 172.82540 * 9 7 6 28 28 C 1.35917 * 107.17518 * 359.60589 * 6 5 4 29 29 O 1.34205 * 125.44527 * 0.03386 * 4 3 2 30 30 H 1.08992 * 109.47667 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47072 * 299.99973 * 1 2 3 32 32 H 1.09007 * 109.47356 * 59.99659 * 1 2 3 33 33 H 1.09003 * 109.46505 * 240.00410 * 2 1 3 34 34 H 1.08994 * 109.47137 * 120.00597 * 2 1 3 35 35 H 1.09001 * 109.58691 * 353.42141 * 10 9 7 36 36 H 1.08996 * 109.58631 * 113.70637 * 10 9 7 37 37 H 1.09000 * 109.49807 * 185.41383 * 11 10 9 38 38 H 1.09008 * 109.49630 * 65.31889 * 11 10 9 39 39 H 0.96995 * 119.99659 * 264.92743 * 14 12 11 40 40 H 0.96999 * 120.00284 * 179.97438 * 18 17 15 41 41 H 1.08992 * 109.47480 * 305.00320 * 25 23 12 42 42 H 1.09005 * 109.47068 * 65.00558 * 25 23 12 43 43 H 1.09004 * 109.46853 * 180.02562 * 26 25 23 44 44 H 1.09002 * 109.47597 * 299.99842 * 26 25 23 45 45 H 1.08998 * 109.47673 * 60.00221 * 26 25 23 46 46 H 1.09004 * 109.58635 * 6.57401 * 27 9 7 47 47 H 1.09004 * 109.70356 * 246.22113 * 27 9 7 48 48 H 1.07998 * 126.45917 * 180.26457 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3482 1.5245 0.0005 5 7 3.9595 2.6781 0.0065 6 6 5.3039 2.4522 0.0014 7 6 6.3631 3.4768 0.0025 8 8 7.5266 3.1487 0.1363 9 7 6.0425 4.7776 -0.1448 10 6 4.6653 5.1776 -0.4640 11 6 4.6869 6.0690 -1.7098 12 6 5.6439 7.2405 -1.4774 13 1 5.3188 7.8069 -0.6047 14 7 5.6419 8.1131 -2.6542 15 6 4.6878 9.0869 -2.7829 16 1 3.9365 9.2114 -2.0171 17 6 4.6863 9.9140 -3.8976 18 7 5.6016 9.7620 -4.8312 19 14 3.3844 11.2420 -4.0736 20 1 3.6006 11.9822 -5.3426 21 1 2.0378 10.6161 -4.0894 22 1 3.4794 12.1830 -2.9287 23 6 7.0585 6.7066 -1.2408 24 1 7.3745 6.1191 -2.1028 25 6 8.0202 7.8797 -1.0412 26 6 9.4519 7.3520 -0.9292 27 6 7.0637 5.8225 0.0102 28 6 5.4846 1.1051 0.0010 29 8 4.2630 0.5426 0.0004 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.0632 4.2904 -0.6600 36 1 4.2411 5.7290 0.3750 37 1 3.6841 6.4509 -1.9013 38 1 5.0253 5.4875 -2.5674 39 1 6.3164 8.0010 -3.3421 40 1 5.6003 10.3398 -5.6103 41 1 7.9483 8.5573 -1.8918 42 1 7.7573 8.4137 -0.1280 43 1 10.1371 8.1877 -0.7865 44 1 9.5239 6.6743 -0.0784 45 1 9.7149 6.8179 -1.8423 46 1 8.0442 5.3607 0.1272 47 1 6.8386 6.4292 0.8873 48 1 6.4308 0.5845 0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037880488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:55 Heat of formation + Delta-G solvation = -26.900845 kcal Electronic energy + Delta-G solvation = -29951.807013 eV Core-core repulsion = 25816.875292 eV Total energy + Delta-G solvation = -4134.931721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.71309 -39.99927 -39.26012 -37.70746 -35.40937 -34.45211 -33.65426 -32.38004 -31.63600 -29.86127 -29.37621 -28.64895 -25.63768 -24.30085 -23.79990 -23.63143 -22.58298 -22.27935 -20.73465 -20.35865 -19.45462 -18.34515 -17.87348 -17.28272 -16.96722 -16.68872 -15.98971 -15.84117 -15.29427 -15.01821 -14.81335 -14.10584 -13.93494 -13.71209 -13.58403 -13.38408 -13.29594 -13.21684 -13.12873 -12.93771 -12.59683 -12.25758 -12.10746 -12.01069 -11.74473 -11.55991 -11.23137 -11.13945 -10.91191 -10.83943 -10.63777 -10.36851 -10.31599 -10.17833 -10.09075 -9.85346 -9.56633 -9.50389 -8.97047 -8.78631 -8.35707 -6.88751 -5.71744 -2.99747 0.91396 1.59870 1.83282 2.42474 3.05720 3.25880 3.46927 3.51575 3.52225 4.17616 4.29930 4.31301 4.62109 4.63057 4.64343 4.76754 5.13622 5.16961 5.22163 5.24602 5.29745 5.40979 5.44973 5.51976 5.57947 5.67276 5.70437 5.70741 5.79502 5.93559 5.98675 6.17821 6.22079 6.27169 6.39227 6.45618 6.48794 6.55297 6.59566 6.71170 6.81610 6.94991 7.03947 7.17885 7.25527 7.58065 7.74449 8.17273 8.46807 9.58001 10.16340 10.51523 11.50833 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.003141 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.005791 B = 8913.218104 C =11173.025893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.382 3.618 5 N -0.448 5.448 6 C -0.038 4.038 7 C 0.599 3.401 8 O -0.545 6.545 9 N -0.584 5.584 10 C 0.082 3.918 11 C -0.148 4.148 12 C 0.182 3.818 13 H 0.047 0.953 14 N -0.721 5.721 15 C -0.235 4.235 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.292 1.292 21 H -0.287 1.287 22 H -0.287 1.287 23 C -0.103 4.103 24 H 0.070 0.930 25 C -0.112 4.112 26 C -0.152 4.152 27 C 0.118 3.882 28 C -0.002 4.002 29 O -0.227 6.227 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.861 -21.612 12.147 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.152 6.152 4 C 0.137 3.863 5 N -0.194 5.194 6 C -0.156 4.156 7 C 0.385 3.615 8 O -0.424 6.424 9 N -0.314 5.314 10 C -0.041 4.041 11 C -0.190 4.190 12 C 0.072 3.928 13 H 0.065 0.935 14 N -0.361 5.361 15 C -0.366 4.366 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.214 1.214 22 H -0.213 1.213 23 C -0.124 4.124 24 H 0.088 0.912 25 C -0.150 4.150 26 C -0.210 4.210 27 C -0.004 4.004 28 C -0.074 4.074 29 O -0.118 6.118 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.086 0.914 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.957 -20.974 12.226 24.598 hybrid contribution -0.379 -0.069 -0.502 0.633 sum -4.335 -21.043 11.724 24.476 Atomic orbital electron populations 1.21815 0.91183 1.03623 1.04370 1.23059 0.96931 0.79380 1.02997 1.86409 1.08983 1.30787 1.89045 1.23673 0.83446 0.81781 0.97409 1.71216 1.03999 1.20030 1.24162 1.21736 0.90162 0.93982 1.09727 1.16725 0.85898 0.81611 0.77244 1.90798 1.18315 1.80990 1.52309 1.47979 1.11729 1.04737 1.66918 1.22699 0.81223 1.02221 0.97945 1.22650 1.02392 0.97815 0.96100 1.20229 0.90988 0.90064 0.91541 0.93478 1.42404 1.35379 1.36908 1.21395 1.19185 1.06112 1.07766 1.03560 0.91299 1.24709 0.98947 1.00015 0.97277 1.69648 1.35948 1.41563 1.11053 0.86306 0.81380 0.81904 0.76826 1.21830 1.21364 1.21348 1.21771 0.97434 0.96145 0.97002 0.91174 1.21452 0.92955 0.97455 1.03120 1.21845 0.97249 1.00570 1.01303 1.21832 0.92025 0.88429 0.98151 1.24909 0.85786 0.92785 1.03893 1.84381 1.16258 1.39220 1.71971 0.89483 0.90921 0.90813 0.90769 0.90844 0.85495 0.91915 0.90676 0.92593 0.78267 0.93560 0.89768 0.92457 0.93216 0.93224 0.92978 0.89079 0.91377 0.74823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 10.28 37.16 0.38 -0.26 16 2 C 0.05 0.30 6.38 37.16 0.24 0.54 16 3 O -0.24 -2.45 10.19 -40.97 -0.42 -2.87 16 4 C 0.38 4.44 8.98 52.22 0.47 4.91 16 5 N -0.45 -6.19 7.89 -11.71 -0.09 -6.28 16 6 C -0.04 -0.51 6.66 -82.98 -0.55 -1.06 16 7 C 0.60 9.42 7.67 -12.54 -0.10 9.33 16 8 O -0.55 -9.41 16.32 5.26 0.09 -9.32 16 9 N -0.58 -9.25 2.97 -174.06 -0.52 -9.77 16 10 C 0.08 1.30 6.09 -3.71 -0.02 1.28 16 11 C -0.15 -2.75 5.66 -26.61 -0.15 -2.91 16 12 C 0.18 3.62 2.19 -67.89 -0.15 3.47 16 13 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 14 N -0.72 -17.75 4.33 -53.39 -0.23 -17.98 16 15 C -0.23 -6.43 9.93 -15.06 -0.15 -6.58 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 19 Si 0.90 22.43 29.55 -169.99 -5.02 17.41 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C -0.10 -1.78 1.92 -90.50 -0.17 -1.96 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 25 C -0.11 -1.87 5.31 -26.73 -0.14 -2.01 16 26 C -0.15 -2.17 9.67 37.16 0.36 -1.81 16 27 C 0.12 1.82 5.34 -3.71 -0.02 1.80 16 28 C 0.00 -0.02 11.94 29.90 0.36 0.34 16 29 O -0.23 -2.27 10.20 -17.77 -0.18 -2.45 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.13 2.01 4.13 -59.22 -0.24 1.77 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.38 10.16 7.51 -40.82 -0.31 9.85 16 40 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.08 1.67 7.22 -51.93 -0.37 1.30 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.41 5.72 -51.93 -0.30 1.11 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.24 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -32.49 388.76 -7.00 -39.49 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.46 Total: 8.72 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 0.25 Total: 4.59 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.12 Total: -61.42 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.51 Total: -14.64 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.49 -7.00 -39.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037880488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.588 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds