Wall clock time and date at job start Tue Mar 31 2020 20:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47099 * 2 1 4 4 C 1.35351 * 116.99964 * 180.02562 * 3 2 1 5 5 N 1.30548 * 125.44585 * 180.29592 * 4 3 2 6 6 C 1.36332 * 108.38501 * 180.16177 * 5 4 3 7 7 C 1.47364 * 126.41601 * 179.82597 * 6 5 4 8 8 O 1.21620 * 120.00134 * 173.21932 * 7 6 5 9 9 N 1.34769 * 119.99829 * 353.21935 * 7 6 5 10 10 C 1.46928 * 120.63563 * 354.85891 * 9 7 6 11 11 C 1.53188 * 108.77981 * 126.36865 * 10 9 7 12 12 C 1.53033 * 109.31363 * 54.63368 * 11 10 9 13 13 H 1.09003 * 109.44922 * 58.64995 * 12 11 10 14 14 N 1.46506 * 109.46124 * 178.61367 * 12 11 10 15 15 C 1.36931 * 119.99863 * 275.07027 * 14 12 11 16 16 H 1.07999 * 120.00437 * 0.02562 * 15 14 12 17 17 C 1.38818 * 119.99645 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99681 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00121 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47294 * 89.99818 * 19 17 15 21 21 H 1.48498 * 109.47194 * 330.00122 * 19 17 15 22 22 H 1.48499 * 109.47539 * 209.99771 * 19 17 15 23 23 C 1.53037 * 109.54372 * 298.63822 * 12 11 10 24 24 H 1.09001 * 109.49706 * 301.41515 * 23 12 11 25 25 C 1.52995 * 109.50068 * 181.34889 * 23 12 11 26 26 C 1.53001 * 109.47248 * 174.99918 * 25 23 12 27 27 C 1.46935 * 120.63001 * 174.83138 * 9 7 6 28 28 C 1.35916 * 107.16965 * 359.55899 * 6 5 4 29 29 O 1.34203 * 125.44517 * 359.96809 * 4 3 2 30 30 H 1.08998 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47151 * 300.00150 * 1 2 3 32 32 H 1.09000 * 109.46891 * 60.00356 * 1 2 3 33 33 H 1.09002 * 109.47371 * 239.99434 * 2 1 3 34 34 H 1.09000 * 109.46891 * 119.99644 * 2 1 3 35 35 H 1.08995 * 109.58735 * 246.16070 * 10 9 7 36 36 H 1.09006 * 109.57979 * 6.43697 * 10 9 7 37 37 H 1.09008 * 109.49335 * 294.68476 * 11 10 9 38 38 H 1.08996 * 109.49797 * 174.58954 * 11 10 9 39 39 H 0.97002 * 119.99743 * 95.06669 * 14 12 11 40 40 H 0.97006 * 119.99738 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.46865 * 294.99516 * 25 23 12 42 42 H 1.08992 * 109.47465 * 54.99944 * 25 23 12 43 43 H 1.08999 * 109.47177 * 59.99462 * 26 25 23 44 44 H 1.08998 * 109.47264 * 180.02562 * 26 25 23 45 45 H 1.09000 * 109.46886 * 300.00305 * 26 25 23 46 46 H 1.09005 * 109.58192 * 113.84634 * 27 9 7 47 47 H 1.08995 * 109.70253 * 353.48823 * 27 9 7 48 48 H 1.08005 * 126.45346 * 180.29295 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5247 -0.0005 5 7 3.9594 2.6782 0.0049 6 6 5.3039 2.4525 -0.0015 7 6 6.3630 3.4771 -0.0021 8 8 7.5278 3.1478 0.1163 9 7 6.0409 4.7791 -0.1339 10 6 4.6521 5.1845 -0.3901 11 6 4.2364 6.2145 0.6648 12 6 5.2387 7.3709 0.6656 13 1 5.2693 7.8255 -0.3247 14 7 4.8260 8.3740 1.6505 15 6 3.9139 9.3358 1.3070 16 1 3.4985 9.3549 0.3103 17 6 3.5224 10.2859 2.2404 18 7 2.6453 11.2102 1.9104 19 14 4.2403 10.2526 3.9645 20 1 5.4712 11.0823 4.0043 21 1 4.5742 8.8538 4.3348 22 1 3.2464 10.7952 4.9253 23 6 6.6289 6.8432 1.0273 24 1 6.5935 6.3663 2.0069 25 6 7.6236 8.0052 1.0607 26 6 8.9842 7.4982 1.5430 27 6 7.0718 5.8202 -0.0235 28 6 5.4846 1.1054 -0.0010 29 8 4.2630 0.5427 -0.0005 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.5782 5.6281 -1.3830 36 1 4.0001 4.3130 -0.3299 37 1 4.2235 5.7436 1.6478 38 1 3.2423 6.5949 0.4300 39 1 5.1987 8.3566 2.5458 40 1 2.3720 11.8743 2.5625 41 1 7.7261 8.4246 0.0599 42 1 7.2605 8.7749 1.7417 43 1 9.3474 6.7285 0.8620 44 1 9.6927 8.3262 1.5673 45 1 8.8817 7.0788 2.5438 46 1 7.1952 6.3158 -0.9865 47 1 8.0172 5.3706 0.2799 48 1 6.4309 0.5848 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037880491.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:58 Heat of formation + Delta-G solvation = -20.945171 kcal Electronic energy + Delta-G solvation = -30120.959687 eV Core-core repulsion = 25986.286223 eV Total energy + Delta-G solvation = -4134.673463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.75294 -40.06657 -39.27883 -37.82681 -35.48341 -34.55861 -33.76367 -32.38294 -31.69248 -29.93071 -29.73531 -28.87347 -25.77897 -24.32163 -23.88795 -23.60171 -22.58674 -22.10467 -20.73908 -20.43997 -19.61243 -18.44229 -17.89040 -17.58213 -17.14676 -16.73857 -15.99478 -15.90922 -15.33662 -15.01561 -14.81733 -14.32991 -14.01206 -13.88939 -13.55866 -13.39135 -13.36994 -13.22492 -13.20770 -12.86558 -12.61039 -12.37973 -12.24811 -12.17374 -11.80942 -11.71778 -11.35321 -11.18006 -11.11454 -10.93827 -10.71317 -10.46004 -10.35160 -10.26462 -10.17339 -9.73013 -9.58713 -9.50730 -8.99815 -8.81112 -8.42814 -7.19134 -5.72467 -3.06791 0.87635 1.57194 1.79242 2.39585 3.01751 3.20803 3.40812 3.44454 3.48594 4.13551 4.29670 4.31354 4.60708 4.61506 4.63399 4.73374 5.04905 5.11194 5.15692 5.19345 5.23350 5.27589 5.36838 5.44635 5.53415 5.56103 5.61366 5.65977 5.70012 5.82424 5.89538 6.06124 6.09416 6.17511 6.23555 6.33025 6.37879 6.46161 6.49566 6.62565 6.78364 6.81712 6.95676 7.10546 7.22183 7.53710 8.04531 8.11953 8.46993 9.25788 9.98693 10.19302 11.46118 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.003357 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.149290 B = 8339.179259 C =10343.673517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.243 6.243 4 C 0.385 3.615 5 N -0.447 5.447 6 C -0.038 4.038 7 C 0.599 3.401 8 O -0.546 6.546 9 N -0.583 5.583 10 C 0.064 3.936 11 C -0.143 4.143 12 C 0.186 3.814 13 H 0.056 0.944 14 N -0.746 5.746 15 C -0.237 4.237 16 H 0.090 0.910 17 C 0.004 3.996 18 N -0.935 5.935 19 Si 0.881 3.119 20 H -0.285 1.285 21 H -0.278 1.278 22 H -0.292 1.292 23 C -0.108 4.108 24 H 0.069 0.931 25 C -0.113 4.113 26 C -0.154 4.154 27 C 0.119 3.881 28 C -0.002 4.002 29 O -0.226 6.226 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.146 0.854 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.360 0.640 40 H 0.258 0.742 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 -25.403 -5.548 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.151 6.151 4 C 0.140 3.860 5 N -0.193 5.193 6 C -0.156 4.156 7 C 0.385 3.615 8 O -0.425 6.425 9 N -0.313 5.313 10 C -0.059 4.059 11 C -0.184 4.184 12 C 0.076 3.924 13 H 0.074 0.926 14 N -0.387 5.387 15 C -0.367 4.367 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.584 5.584 19 Si 0.712 3.288 20 H -0.211 1.211 21 H -0.204 1.204 22 H -0.219 1.219 23 C -0.128 4.128 24 H 0.087 0.913 25 C -0.151 4.151 26 C -0.211 4.211 27 C -0.003 4.003 28 C -0.074 4.074 29 O -0.118 6.118 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.162 0.838 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.193 0.807 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 2.957 -24.750 -5.603 25.548 hybrid contribution 0.535 -0.629 1.363 1.594 sum 3.492 -25.380 -4.240 25.967 Atomic orbital electron populations 1.21820 0.91125 1.03624 1.04459 1.23072 0.96997 0.79325 1.02976 1.86433 1.08915 1.30828 1.88935 1.23754 0.83462 0.81764 0.96976 1.70956 1.03993 1.19667 1.24668 1.21734 0.90126 0.93973 1.09756 1.16729 0.85945 0.81643 0.77137 1.90797 1.18308 1.81090 1.52338 1.47997 1.10744 1.04631 1.67935 1.23047 0.81408 1.02872 0.98559 1.22515 1.01550 0.96221 0.98085 1.20227 0.89725 0.88570 0.93841 0.92618 1.42784 1.51970 1.33087 1.10901 1.19069 1.15300 1.03503 0.98838 0.89198 1.24642 0.99152 0.97766 0.97589 1.69702 1.35554 1.18583 1.34523 0.86597 0.78623 0.77394 0.86225 1.21137 1.20381 1.21885 1.21824 0.96776 0.95417 0.98777 0.91298 1.21459 0.93606 0.97685 1.02342 1.21860 0.97487 1.00762 1.01021 1.21797 0.91232 0.87947 0.99345 1.24894 0.85808 0.92733 1.03935 1.84388 1.16248 1.39178 1.71970 0.89480 0.90800 0.90834 0.90802 0.90799 0.92181 0.83781 0.92573 0.90313 0.80712 0.93170 0.91877 0.90482 0.92902 0.93048 0.93103 0.91204 0.89060 0.74822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 37.16 0.38 -0.28 16 2 C 0.05 0.30 6.38 37.16 0.24 0.54 16 3 O -0.24 -2.45 10.19 -40.97 -0.42 -2.87 16 4 C 0.39 4.42 8.98 52.22 0.47 4.89 16 5 N -0.45 -6.11 7.77 -11.72 -0.09 -6.21 16 6 C -0.04 -0.50 6.72 -82.99 -0.56 -1.05 16 7 C 0.60 9.10 7.68 -12.55 -0.10 9.01 16 8 O -0.55 -9.09 16.33 5.26 0.09 -9.00 16 9 N -0.58 -8.92 2.97 -174.05 -0.52 -9.44 16 10 C 0.06 0.99 6.33 -3.71 -0.02 0.96 16 11 C -0.14 -2.59 5.66 -26.62 -0.15 -2.75 16 12 C 0.19 3.57 2.19 -67.89 -0.15 3.43 16 13 H 0.06 1.11 8.08 -51.93 -0.42 0.70 16 14 N -0.75 -17.44 4.13 -53.39 -0.22 -17.66 16 15 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 17 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 18 N -0.94 -29.43 13.97 55.49 0.78 -28.65 16 19 Si 0.88 22.34 27.74 -169.99 -4.71 17.62 16 20 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 22 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 23 C -0.11 -1.76 1.92 -90.50 -0.17 -1.94 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 C -0.11 -1.76 5.31 -26.73 -0.14 -1.90 16 26 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 27 C 0.12 1.76 5.31 -3.71 -0.02 1.74 16 28 C 0.00 -0.02 11.94 29.90 0.36 0.34 16 29 O -0.23 -2.19 10.20 -17.76 -0.18 -2.37 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.15 2.23 3.64 -77.96 -0.28 1.94 16 37 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.36 8.44 5.37 -40.82 -0.22 8.22 16 40 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.39 7.21 -51.93 -0.37 1.01 16 43 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 1.34 5.76 -51.93 -0.30 1.04 16 48 H 0.24 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -33.73 385.37 -6.69 -40.42 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.45 Total: 7.77 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 0.24 Total: 4.57 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.05 Total: -61.96 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.51 Total: -14.24 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.73 -6.69 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037880491.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.479 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds