Wall clock time and date at job start Tue Mar 31 2020 20:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47066 * 2 1 4 4 H 1.09004 * 109.52332 * 305.08193 * 3 2 1 5 5 C 1.53188 * 109.49625 * 65.16559 * 3 2 1 6 6 N 1.46926 * 108.77865 * 174.58777 * 5 3 2 7 7 C 1.34774 * 120.63211 * 126.36770 * 6 5 3 8 8 O 1.21492 * 120.00173 * 353.21741 * 7 6 5 9 9 C 1.48334 * 119.99856 * 173.21719 * 7 6 5 10 10 C 1.42269 * 126.93764 * 173.06991 * 9 7 6 11 11 C 1.35312 * 103.92153 * 179.91398 * 10 9 7 12 12 C 1.50700 * 126.66803 * 180.09227 * 11 10 9 13 13 O 1.42896 * 109.47231 * 90.27764 * 12 11 10 14 14 C 1.42901 * 113.99930 * 180.02562 * 13 12 11 15 15 O 1.34021 * 106.67019 * 0.34491 * 11 10 9 16 16 N 1.20908 * 111.84039 * 359.76566 * 15 11 10 17 17 C 1.46921 * 118.73470 * 306.39047 * 6 5 3 18 18 C 1.53192 * 108.76605 * 53.61527 * 17 6 5 19 19 C 1.53035 * 109.31279 * 305.34153 * 18 17 6 20 20 H 1.08997 * 109.46111 * 301.37289 * 19 18 17 21 21 N 1.46506 * 109.46174 * 181.40026 * 19 18 17 22 22 C 1.36932 * 120.00257 * 84.97178 * 21 19 18 23 23 H 1.08004 * 119.99724 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99982 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00287 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99625 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46641 * 180.02562 * 26 24 22 28 28 H 1.48493 * 109.47276 * 299.99552 * 26 24 22 29 29 H 1.48499 * 109.47511 * 60.00206 * 26 24 22 30 30 H 1.08996 * 109.47284 * 299.99269 * 1 2 3 31 31 H 1.09001 * 109.47237 * 59.99963 * 1 2 3 32 32 H 1.09004 * 109.47072 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47324 * 240.00681 * 2 1 3 34 34 H 1.08999 * 109.47503 * 120.00502 * 2 1 3 35 35 H 1.09002 * 109.58873 * 294.37606 * 5 3 2 36 36 H 1.09003 * 109.58822 * 54.65178 * 5 3 2 37 37 H 1.08005 * 128.03727 * 0.02686 * 10 9 7 38 38 H 1.08994 * 109.47270 * 210.27910 * 12 11 10 39 39 H 1.09002 * 109.46831 * 330.28288 * 12 11 10 40 40 H 1.08996 * 109.47517 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47135 * 300.00098 * 14 13 12 42 42 H 1.08995 * 109.47522 * 60.00079 * 14 13 12 43 43 H 1.08997 * 109.58867 * 173.39230 * 17 6 5 44 44 H 1.08999 * 109.58776 * 293.67609 * 17 6 5 45 45 H 1.09003 * 109.49013 * 185.39814 * 18 17 6 46 46 H 1.09000 * 109.51039 * 65.30211 * 18 17 6 47 47 H 0.96998 * 119.99932 * 264.97781 * 21 19 18 48 48 H 0.97003 * 120.00019 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6385 2.1267 1.3105 6 7 2.2450 3.4644 1.3508 7 6 1.4856 4.5565 1.5674 8 8 0.2755 4.4564 1.6089 9 6 2.1271 5.8806 1.7553 10 6 1.4741 7.1406 1.8554 11 6 2.4885 8.0210 2.0189 12 6 2.3668 9.5143 2.1810 13 8 2.2512 9.8350 3.5687 14 6 2.1291 11.2339 3.8337 15 8 3.6230 7.3076 2.0031 16 7 3.4096 6.1265 1.8569 17 6 3.6951 3.5888 1.1499 18 6 4.0732 2.8883 -0.1590 19 6 3.5652 1.4451 -0.1258 20 1 4.0008 0.9263 0.7281 21 7 3.9541 0.7621 -1.3621 22 6 5.1920 0.1860 -1.4658 23 1 5.8815 0.2347 -0.6359 24 6 5.5606 -0.4607 -2.6374 25 7 4.7202 -0.5205 -3.6486 26 14 7.2491 -1.2472 -2.7785 27 1 7.3955 -1.8679 -4.1197 28 1 8.2955 -0.2093 -2.5972 29 1 7.3989 -2.2894 -1.7313 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.5533 2.2160 1.3587 36 1 1.9943 1.5363 2.1549 37 1 0.4146 7.3463 1.8127 38 1 3.2524 9.9979 1.7689 39 1 1.4811 9.8662 1.6518 40 1 2.0465 11.3942 4.9087 41 1 3.0095 11.7535 3.4558 42 1 1.2384 11.6211 3.3389 43 1 3.9669 4.6427 1.0919 44 1 4.2208 3.1212 1.9824 45 1 5.1573 2.8898 -0.2723 46 1 3.6186 3.4148 -0.9982 47 1 3.3348 0.7181 -2.1073 48 1 4.9777 -0.9727 -4.4672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037932905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:09 Heat of formation + Delta-G solvation = 5.221109 kcal Electronic energy + Delta-G solvation = -29700.768059 eV Core-core repulsion = 25567.229250 eV Total energy + Delta-G solvation = -4133.538808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.33681 -40.12618 -38.46025 -37.84194 -34.93564 -34.25350 -33.73586 -32.92171 -31.72330 -29.50823 -28.84603 -28.21632 -26.15654 -25.84369 -24.18772 -23.67709 -23.08016 -22.19216 -20.81246 -19.94376 -19.17698 -18.17614 -17.67516 -17.19483 -17.02949 -16.74196 -16.35351 -15.96325 -15.39764 -15.12017 -14.90583 -14.26002 -14.00850 -13.90438 -13.72871 -13.44508 -13.34643 -13.21737 -13.07154 -12.80569 -12.63654 -12.22300 -12.11589 -12.04400 -11.70498 -11.30239 -11.21869 -10.90448 -10.81867 -10.69646 -10.59737 -10.40529 -10.33073 -10.23136 -10.16182 -10.11099 -9.89394 -9.68873 -9.59133 -8.88189 -8.54496 -6.95826 -5.76979 -3.05637 0.83264 1.33908 2.46610 2.81796 3.07030 3.43302 3.48083 3.48456 3.48761 3.74571 4.12843 4.49800 4.57917 4.60104 4.73065 4.82323 4.84056 4.88008 5.12594 5.14802 5.18924 5.22531 5.29801 5.42623 5.51208 5.55425 5.60055 5.63173 5.68125 5.83053 5.85952 6.06976 6.12650 6.18904 6.35132 6.36083 6.39890 6.45693 6.45984 6.55893 6.68072 6.84222 6.95321 7.06452 7.34961 7.68923 7.74481 8.04545 8.41162 9.52584 10.09761 10.45047 11.45363 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.002598 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.255301 B =10776.654968 C =12229.028739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.071 0.929 5 C 0.119 3.881 6 N -0.588 5.588 7 C 0.594 3.406 8 O -0.531 6.531 9 C -0.019 4.019 10 C -0.155 4.155 11 C -0.040 4.040 12 C 0.145 3.855 13 O -0.385 6.385 14 C 0.031 3.969 15 O 0.125 5.875 16 N -0.315 5.315 17 C 0.087 3.913 18 C -0.149 4.149 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.292 1.292 28 H -0.287 1.287 29 H -0.286 1.286 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.183 0.817 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.057 0.943 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 20.765 13.454 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.319 5.319 7 C 0.380 3.620 8 O -0.407 6.407 9 C -0.177 4.177 10 C -0.177 4.177 11 C -0.103 4.103 12 C 0.068 3.932 13 O -0.304 6.304 14 C -0.065 4.065 15 O 0.050 5.950 16 N -0.017 5.017 17 C -0.036 4.036 18 C -0.190 4.190 19 C 0.072 3.928 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.213 1.213 29 H -0.213 1.213 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.200 0.800 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.779 19.633 13.587 24.820 hybrid contribution 0.169 0.066 -0.647 0.672 sum -6.610 19.698 12.941 24.478 Atomic orbital electron populations 1.21846 0.96767 1.01074 1.01323 1.21453 0.94398 0.95541 1.03571 1.21787 0.97788 0.96344 0.96507 0.91089 1.21865 0.99472 0.80680 0.98298 1.48039 1.09253 1.06323 1.68316 1.16933 0.85946 0.81585 0.77557 1.90769 1.12837 1.84933 1.52202 1.23554 0.89753 0.97222 1.07200 1.22462 1.01875 0.89369 1.03972 1.23886 0.85136 0.95987 1.05304 1.20653 1.02934 0.85174 0.84473 1.87981 1.94762 1.24833 1.22844 1.22824 1.00343 0.80738 1.02587 1.84829 1.32539 1.12999 1.64671 1.74185 1.17607 0.94706 1.15166 1.22497 0.78335 1.03690 0.99077 1.22668 1.02294 0.99067 0.94967 1.20208 0.90703 0.90601 0.91272 0.93349 1.42395 1.16466 1.64464 1.12667 1.19171 0.91795 1.27362 0.98575 0.91290 1.24726 0.98144 1.01576 0.96432 1.69649 1.35262 1.48399 1.04739 0.86295 0.84163 0.79178 0.76704 1.21770 1.21338 1.21309 0.93228 0.92950 0.93118 0.89676 0.92394 0.88902 0.91166 0.79991 0.90272 0.89283 0.89032 0.93451 0.93503 0.87541 0.91352 0.90412 0.92381 0.78199 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 37.15 0.36 -1.78 16 2 C -0.11 -1.83 5.31 -26.73 -0.14 -1.97 16 3 C -0.10 -1.76 1.92 -90.50 -0.17 -1.94 16 4 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 5 C 0.12 1.81 5.34 -3.71 -0.02 1.79 16 6 N -0.59 -9.21 2.97 -173.71 -0.52 -9.73 16 7 C 0.59 9.56 7.71 -12.11 -0.09 9.47 16 8 O -0.53 -9.53 16.38 5.37 0.09 -9.44 16 9 C -0.02 -0.27 6.88 -82.53 -0.57 -0.83 16 10 C -0.15 -1.71 10.93 -39.08 -0.43 -2.13 16 11 C -0.04 -0.38 7.10 -35.35 -0.25 -0.63 16 12 C 0.14 0.87 6.50 36.01 0.23 1.11 16 13 O -0.39 -2.97 10.69 -35.23 -0.38 -3.35 16 14 C 0.03 0.13 11.01 101.05 1.11 1.24 16 15 O 0.12 1.44 11.18 17.23 0.19 1.63 16 16 N -0.31 -4.25 8.65 33.29 0.29 -3.96 16 17 C 0.09 1.33 6.13 -3.71 -0.02 1.31 16 18 C -0.15 -2.68 5.66 -26.61 -0.15 -2.83 16 19 C 0.18 3.55 2.19 -67.89 -0.15 3.40 16 20 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 21 N -0.72 -17.44 4.33 -53.39 -0.23 -17.67 16 22 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 23 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 26 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.66 7.22 -51.93 -0.37 1.29 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.42 5.72 -51.93 -0.30 1.13 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.05 0.14 8.14 -51.93 -0.42 -0.29 16 42 H 0.05 0.13 8.14 -51.93 -0.42 -0.30 16 43 H 0.11 1.60 4.20 -56.83 -0.24 1.36 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.38 10.03 7.51 -40.82 -0.31 9.72 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -32.34 389.38 -6.97 -39.31 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.45 Total: 8.04 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.54 Total: -0.84 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.27 Total: -58.44 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.10 Total: -11.16 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.34 -6.97 -39.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037932905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.534 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds