Wall clock time and date at job start Tue Mar 31 2020 20:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47138 * 2 1 4 4 H 1.08996 * 109.50199 * 54.93144 * 3 2 1 5 5 C 1.53190 * 109.52432 * 294.85178 * 3 2 1 6 6 N 1.46930 * 108.77865 * 185.40318 * 5 3 2 7 7 C 1.34779 * 120.63023 * 233.63395 * 6 5 3 8 8 O 1.21498 * 119.99852 * 355.09633 * 7 6 5 9 9 C 1.48324 * 120.00276 * 175.09786 * 7 6 5 10 10 C 1.42270 * 126.93917 * 186.25215 * 9 7 6 11 11 C 1.35316 * 103.92232 * 179.91209 * 10 9 7 12 12 C 1.50699 * 126.66881 * 180.09166 * 11 10 9 13 13 O 1.42899 * 109.47298 * 90.28281 * 12 11 10 14 14 C 1.42898 * 114.00152 * 180.02562 * 13 12 11 15 15 O 1.34017 * 106.66556 * 0.35182 * 11 10 9 16 16 N 1.20898 * 111.84921 * 359.75600 * 15 11 10 17 17 C 1.46992 * 118.75725 * 53.60075 * 6 5 3 18 18 C 1.53191 * 108.74064 * 306.41814 * 17 6 5 19 19 C 1.53037 * 109.34049 * 54.61804 * 18 17 6 20 20 H 1.09007 * 109.46347 * 58.62725 * 19 18 17 21 21 N 1.46502 * 109.46336 * 178.59701 * 19 18 17 22 22 C 1.36930 * 120.00447 * 275.00454 * 21 19 18 23 23 H 1.08008 * 119.99802 * 359.97438 * 22 21 19 24 24 C 1.38804 * 120.00545 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00073 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00570 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46710 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47283 * 119.99774 * 26 24 22 29 29 H 1.48495 * 109.47195 * 240.00090 * 26 24 22 30 30 H 1.08999 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47167 * 300.00470 * 1 2 3 32 32 H 1.08997 * 109.46966 * 60.00119 * 1 2 3 33 33 H 1.08997 * 109.47167 * 239.99530 * 2 1 3 34 34 H 1.09005 * 109.46797 * 120.00154 * 2 1 3 35 35 H 1.09005 * 109.58428 * 305.18626 * 5 3 2 36 36 H 1.08991 * 109.59019 * 65.61027 * 5 3 2 37 37 H 1.07998 * 128.04285 * 0.03875 * 10 9 7 38 38 H 1.08999 * 109.47431 * 210.28523 * 12 11 10 39 39 H 1.09000 * 109.47135 * 330.28398 * 12 11 10 40 40 H 1.08997 * 109.47070 * 180.02562 * 14 13 12 41 41 H 1.09006 * 109.47143 * 300.00036 * 14 13 12 42 42 H 1.08999 * 109.46828 * 60.00135 * 14 13 12 43 43 H 1.08994 * 109.63297 * 186.62550 * 17 6 5 44 44 H 1.08999 * 109.57772 * 66.17830 * 17 6 5 45 45 H 1.08998 * 109.49665 * 294.65043 * 18 17 6 46 46 H 1.08997 * 109.50145 * 174.58674 * 18 17 6 47 47 H 0.97004 * 119.99854 * 94.99388 * 21 19 18 48 48 H 0.97001 * 120.00147 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9823 0.8409 5 6 1.6386 2.1274 -1.3101 6 7 2.2452 3.4651 -1.3497 7 6 1.4857 4.5573 -1.5657 8 8 0.3036 4.4350 -1.8182 9 6 2.0930 5.9087 -1.4950 10 6 1.4139 7.1564 -1.5737 11 6 2.4025 8.0730 -1.4568 12 6 2.2464 9.5718 -1.4719 13 8 2.0480 10.0436 -0.1377 14 6 1.8874 11.4601 -0.0398 15 8 3.5480 7.3890 -1.3308 16 7 3.3635 6.1944 -1.3534 17 6 3.6959 3.5899 -1.1486 18 6 4.0736 2.8881 0.1596 19 6 3.5653 1.4450 0.1258 20 1 4.0007 0.9264 -0.7285 21 7 3.9542 0.7613 1.3617 22 6 5.1917 0.1843 1.4648 23 1 5.8810 0.2330 0.6347 24 6 5.5604 -0.4630 2.6359 25 7 4.7207 -0.5219 3.6478 26 14 7.2485 -1.2507 2.7763 27 1 7.9965 -1.0468 1.5098 28 1 7.9943 -0.6264 3.8983 29 1 7.0961 -2.7055 3.0319 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.9966 1.5387 -2.1548 36 1 0.5534 2.2167 -1.3582 37 1 0.3553 7.3314 -1.6959 38 1 3.1452 10.0266 -1.8881 39 1 1.3859 9.8414 -2.0843 40 1 1.7422 11.7381 1.0040 41 1 2.7786 11.9544 -0.4266 42 1 1.0192 11.7684 -0.6224 43 1 3.9681 4.6436 -1.0897 44 1 4.2216 3.1205 -1.9801 45 1 3.6192 3.4142 0.9991 46 1 5.1577 2.8893 0.2734 47 1 3.3350 0.7174 2.1072 48 1 4.9782 -0.9746 4.4661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037932908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:13 Heat of formation + Delta-G solvation = 7.196598 kcal Electronic energy + Delta-G solvation = -29802.683473 eV Core-core repulsion = 25669.230328 eV Total energy + Delta-G solvation = -4133.453145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.32869 -40.12045 -38.43550 -37.84226 -34.93796 -34.24888 -33.73343 -32.91583 -31.71248 -29.49718 -28.84218 -28.19963 -26.14704 -25.83955 -24.18830 -23.67480 -23.07881 -22.17874 -20.80425 -19.95161 -19.17582 -18.15142 -17.70046 -17.18787 -17.03889 -16.72500 -16.33486 -15.95341 -15.38517 -15.07625 -14.92898 -14.29502 -14.01569 -13.89445 -13.72403 -13.43429 -13.32984 -13.20811 -13.08947 -12.76205 -12.62759 -12.25899 -12.12646 -12.01917 -11.69426 -11.30303 -11.14523 -10.91316 -10.78438 -10.66723 -10.57118 -10.39834 -10.30777 -10.19490 -10.13262 -10.06727 -9.93364 -9.68493 -9.59141 -8.87901 -8.54351 -6.94738 -5.76506 -3.05045 0.83922 1.34504 2.46955 2.80547 3.09964 3.42988 3.48850 3.50528 3.50910 3.73943 4.13608 4.49995 4.58500 4.60404 4.72284 4.81867 4.86015 4.89669 5.13802 5.15507 5.22090 5.22854 5.31211 5.43422 5.53047 5.56172 5.60661 5.63322 5.68585 5.85823 5.86637 6.08401 6.12870 6.20362 6.36361 6.37848 6.40783 6.46191 6.49062 6.57079 6.68983 6.85178 6.95723 7.07791 7.35198 7.70474 7.76632 8.05222 8.41640 9.53202 10.10451 10.45646 11.46041 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.002793 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.226023 B =10023.809161 C =11479.374636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.587 5.587 7 C 0.594 3.406 8 O -0.533 6.533 9 C -0.017 4.017 10 C -0.155 4.155 11 C -0.038 4.038 12 C 0.145 3.855 13 O -0.384 6.384 14 C 0.031 3.969 15 O 0.123 5.877 16 N -0.314 5.314 17 C 0.076 3.924 18 C -0.148 4.148 19 C 0.183 3.817 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.183 0.817 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.119 0.881 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 20.922 -13.096 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.318 5.318 7 C 0.379 3.621 8 O -0.409 6.409 9 C -0.175 4.175 10 C -0.177 4.177 11 C -0.102 4.102 12 C 0.068 3.932 13 O -0.303 6.303 14 C -0.065 4.065 15 O 0.049 5.951 16 N -0.017 5.017 17 C -0.047 4.047 18 C -0.189 4.189 19 C 0.072 3.928 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.200 0.800 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.136 0.864 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.001 19.838 -12.973 24.715 hybrid contribution 0.160 -0.011 0.278 0.321 sum -6.841 19.827 -12.695 24.516 Atomic orbital electron populations 1.21849 0.96780 1.01099 1.01306 1.21450 0.94386 0.95518 1.03584 1.21793 0.97863 0.96348 0.96473 0.91148 1.21865 0.99381 0.80741 0.98264 1.48077 1.09206 1.06281 1.68258 1.16948 0.85532 0.81754 0.77833 1.90767 1.14902 1.85660 1.49572 1.23563 0.89909 0.97144 1.06901 1.22452 1.01921 0.89066 1.04282 1.23898 0.85176 0.96012 1.05085 1.20655 1.02499 0.84250 0.85837 1.88003 1.93646 1.22966 1.25682 1.22829 1.00175 0.80085 1.03391 1.84832 1.32553 1.12819 1.64869 1.74001 1.18193 0.93683 1.15831 1.22733 0.78258 1.04618 0.99099 1.22638 1.02278 0.98904 0.95048 1.20215 0.90663 0.90659 0.91254 0.93374 1.42411 1.16525 1.64390 1.12694 1.19258 0.91790 1.27070 0.98590 0.91193 1.24726 0.98150 1.01626 0.96434 1.69672 1.35181 1.48462 1.04723 0.86153 0.84040 0.78866 0.77352 1.20598 1.21949 1.21942 0.93097 0.92969 0.93217 0.92379 0.89663 0.91173 0.88951 0.79990 0.90331 0.89327 0.88976 0.93473 0.93540 0.86438 0.91417 0.92400 0.90471 0.78211 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 37.16 0.36 -1.79 16 2 C -0.11 -1.83 5.31 -26.73 -0.14 -1.97 16 3 C -0.10 -1.78 1.92 -90.50 -0.17 -1.95 16 4 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 5 C 0.12 1.82 5.32 -3.71 -0.02 1.80 16 6 N -0.59 -9.23 2.97 -173.65 -0.52 -9.75 16 7 C 0.59 9.56 7.72 -12.11 -0.09 9.46 16 8 O -0.53 -9.50 16.39 5.37 0.09 -9.41 16 9 C -0.02 -0.24 6.95 -82.53 -0.57 -0.81 16 10 C -0.15 -1.72 10.93 -39.08 -0.43 -2.14 16 11 C -0.04 -0.37 7.10 -35.35 -0.25 -0.62 16 12 C 0.14 0.89 6.50 36.01 0.23 1.12 16 13 O -0.38 -3.16 10.69 -35.23 -0.38 -3.53 16 14 C 0.03 0.14 11.01 101.05 1.11 1.25 16 15 O 0.12 1.44 11.18 17.24 0.19 1.63 16 16 N -0.31 -4.30 8.51 33.29 0.28 -4.01 16 17 C 0.08 1.17 6.33 -3.67 -0.02 1.15 16 18 C -0.15 -2.69 5.66 -26.61 -0.15 -2.84 16 19 C 0.18 3.57 2.19 -67.89 -0.15 3.42 16 20 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 21 N -0.72 -17.56 4.33 -53.38 -0.23 -17.79 16 22 C -0.24 -6.40 9.93 -15.07 -0.15 -6.55 16 23 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 26 Si 0.90 22.33 29.55 -169.99 -5.02 17.30 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.67 7.22 -51.93 -0.37 1.30 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.42 5.76 -51.93 -0.30 1.12 16 37 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.12 1.78 3.76 -74.11 -0.28 1.50 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 47 H 0.38 10.10 7.51 -40.82 -0.31 9.79 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -32.63 389.10 -7.03 -39.66 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.49 Total: 8.22 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.54 Total: -0.95 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.26 Total: -58.78 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.10 Total: -11.32 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.63 -7.03 -39.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037932908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.855 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds