Wall clock time and date at job start Tue Mar 31 2020 20:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 H 1.08997 * 109.49694 * 304.93908 * 3 2 1 5 5 C 1.53196 * 109.49532 * 64.99930 * 3 2 1 6 6 N 1.46929 * 108.77064 * 174.58656 * 5 3 2 7 7 C 1.34777 * 120.62885 * 126.41690 * 6 5 3 8 8 O 1.21500 * 119.99652 * 353.19402 * 7 6 5 9 9 C 1.48330 * 120.00108 * 173.19604 * 7 6 5 10 10 C 1.42268 * 126.93797 * 173.03294 * 9 7 6 11 11 C 1.35312 * 103.92169 * 180.02562 * 10 9 7 12 12 C 1.50703 * 126.66597 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.47408 * 89.99689 * 12 11 10 14 14 C 1.42895 * 113.99952 * 179.97438 * 13 12 11 15 15 O 1.34012 * 106.66861 * 0.02562 * 11 10 9 16 16 N 1.20903 * 111.84673 * 359.70586 * 15 11 10 17 17 C 1.46921 * 118.74134 * 306.39166 * 6 5 3 18 18 C 1.53188 * 108.77550 * 53.60897 * 17 6 5 19 19 C 1.53037 * 109.49763 * 184.83762 * 3 2 1 20 20 H 1.09006 * 109.46226 * 58.66530 * 19 3 2 21 21 N 1.46494 * 109.46488 * 298.70355 * 19 3 2 22 22 C 1.36933 * 120.00472 * 154.99559 * 21 19 3 23 23 H 1.07996 * 120.00116 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00006 * 179.97438 * 22 21 19 25 25 N 1.31613 * 120.00325 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99658 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47492 * 60.00276 * 26 24 22 28 28 H 1.48496 * 109.46843 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47005 * 299.99947 * 26 24 22 30 30 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47300 * 60.00179 * 1 2 3 32 32 H 1.08997 * 109.47336 * 299.99685 * 1 2 3 33 33 H 1.09001 * 109.47300 * 119.99821 * 2 1 3 34 34 H 1.09001 * 109.47081 * 239.99861 * 2 1 3 35 35 H 1.08998 * 109.58859 * 294.37237 * 5 3 2 36 36 H 1.08999 * 109.58877 * 54.66115 * 5 3 2 37 37 H 1.08004 * 128.04352 * 0.02562 * 10 9 7 38 38 H 1.09006 * 109.47099 * 209.99753 * 12 11 10 39 39 H 1.08994 * 109.47135 * 329.99569 * 12 11 10 40 40 H 1.09004 * 109.46787 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.47492 * 299.99728 * 14 13 12 42 42 H 1.08992 * 109.47474 * 60.00253 * 14 13 12 43 43 H 1.08999 * 109.58961 * 173.39797 * 17 6 5 44 44 H 1.09001 * 109.58861 * 293.82148 * 17 6 5 45 45 H 1.09004 * 109.49897 * 65.31745 * 18 17 6 46 46 H 1.08999 * 109.49705 * 185.38223 * 18 17 6 47 47 H 0.97006 * 120.00187 * 335.00511 * 21 19 3 48 48 H 0.96997 * 120.00377 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3493 7 6 1.4816 4.5579 1.5637 8 8 0.2713 4.4579 1.6025 9 6 2.1228 5.8821 1.7524 10 6 1.4696 7.1422 1.8497 11 6 2.4838 8.0229 2.0128 12 6 2.3620 9.5168 2.1698 13 8 2.2365 9.8415 3.5557 14 6 2.1147 11.2413 3.8160 15 8 3.6178 7.3087 2.0066 16 7 3.4044 6.1269 1.8673 17 6 3.6921 3.5899 1.1522 18 6 4.0740 2.8880 -0.1548 19 6 3.5655 1.4449 -0.1217 20 1 3.8574 0.9359 -1.0403 21 7 4.1480 0.7485 1.0280 22 6 5.3860 0.1726 0.9245 23 1 5.9333 0.2322 -0.0046 24 6 5.9381 -0.4868 2.0142 25 7 5.2715 -0.5590 3.1467 26 14 7.6273 -1.2717 1.8730 27 1 8.6310 -0.2298 1.5381 28 1 7.9867 -1.9086 3.1655 29 1 7.6068 -2.3015 0.8032 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 0.5496 2.2174 1.3539 36 1 1.9885 1.5384 2.1547 37 1 0.4104 7.3481 1.8039 38 1 3.2511 9.9986 1.7628 39 1 1.4807 9.8678 1.6332 40 1 2.0244 11.4046 4.8900 41 1 2.9989 11.7585 3.4433 42 1 1.2284 11.6285 3.3135 43 1 3.9641 4.6438 1.0940 44 1 4.2156 3.1208 1.9853 45 1 3.6218 3.4138 -0.9957 46 1 5.1584 2.8896 -0.2652 47 1 3.6566 0.6952 1.8627 48 1 5.6571 -1.0201 3.9079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037932909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:16 Heat of formation + Delta-G solvation = 7.502903 kcal Electronic energy + Delta-G solvation = -30159.879711 eV Core-core repulsion = 26026.439849 eV Total energy + Delta-G solvation = -4133.439862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.22216 -40.02936 -38.38696 -37.84642 -34.68761 -34.05422 -33.70272 -32.81313 -31.68084 -29.42319 -28.61416 -28.13020 -26.11477 -25.84524 -24.01500 -23.58543 -23.40680 -22.48103 -20.76567 -19.69702 -18.46644 -18.07214 -17.52840 -17.29267 -16.90252 -16.66035 -16.27864 -15.82911 -15.26027 -15.10684 -14.52969 -14.40470 -14.01542 -13.95167 -13.67291 -13.37190 -13.28949 -13.19032 -12.99853 -12.70872 -12.53816 -12.25296 -11.98433 -11.94827 -11.48581 -11.41076 -11.06350 -10.87240 -10.77915 -10.63499 -10.49653 -10.29306 -10.27735 -10.25308 -10.18883 -9.94548 -9.77966 -9.70238 -9.53119 -8.88960 -8.28357 -6.95668 -5.76802 -3.05224 0.96014 1.45351 2.58508 2.99888 3.21904 3.43728 3.48751 3.49385 3.57034 3.90207 4.23608 4.57620 4.59321 4.69160 4.83272 4.89928 4.91162 4.96190 5.19476 5.23850 5.25116 5.27628 5.36826 5.58348 5.61055 5.64186 5.68841 5.73666 5.80902 5.87229 5.93577 6.09716 6.17069 6.28537 6.37730 6.40091 6.45297 6.53591 6.58225 6.63044 6.75219 6.78538 6.95791 7.00662 7.56401 7.70050 7.88943 8.21259 8.41514 9.53037 10.09529 10.44681 11.45607 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.003046 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.255948 B = 9189.469314 C =10785.819488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.118 3.882 6 N -0.582 5.582 7 C 0.592 3.408 8 O -0.537 6.537 9 C -0.019 4.019 10 C -0.155 4.155 11 C -0.044 4.044 12 C 0.146 3.854 13 O -0.384 6.384 14 C 0.031 3.969 15 O 0.125 5.875 16 N -0.311 5.311 17 C 0.095 3.905 18 C -0.148 4.148 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.182 0.818 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 20.676 -4.329 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.003 4.003 6 N -0.313 5.313 7 C 0.377 3.623 8 O -0.414 6.414 9 C -0.178 4.178 10 C -0.177 4.177 11 C -0.107 4.107 12 C 0.069 3.931 13 O -0.303 6.303 14 C -0.065 4.065 15 O 0.049 5.951 16 N -0.012 5.012 17 C -0.027 4.027 18 C -0.189 4.189 19 C 0.067 3.933 20 H 0.070 0.930 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.199 0.801 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.085 19.545 -4.204 21.565 hybrid contribution 0.248 0.018 0.097 0.267 sum -7.836 19.564 -4.107 21.471 Atomic orbital electron populations 1.21856 0.96786 1.01066 1.01366 1.21417 0.94284 0.95601 1.03474 1.21752 0.97502 0.96200 0.96802 0.91479 1.21804 0.98812 0.80897 0.98815 1.48026 1.09402 1.06112 1.67755 1.16934 0.85942 0.81617 0.77805 1.90752 1.12878 1.85034 1.52770 1.23579 0.89746 0.97247 1.07207 1.22444 1.01758 0.89426 1.04060 1.23881 0.85281 0.95954 1.05591 1.20634 1.02746 0.85233 0.84517 1.87998 1.94664 1.24671 1.22994 1.22820 1.00253 0.80784 1.02619 1.84841 1.32527 1.12964 1.64723 1.74268 1.17661 0.94458 1.14812 1.22344 0.78031 1.02488 0.99863 1.22524 1.01870 0.99110 0.95403 1.20239 0.89668 0.90704 0.92666 0.93039 1.42455 1.19043 1.63982 1.10542 1.19164 0.93590 1.27033 0.97074 0.91317 1.24701 0.98526 1.01510 0.96002 1.69632 1.38150 1.48052 1.02242 0.86309 0.84411 0.79157 0.76529 1.21358 1.21822 1.21392 0.93115 0.93346 0.92796 0.90418 0.91924 0.89352 0.90267 0.80085 0.90372 0.89405 0.89044 0.93496 0.93567 0.88212 0.89571 0.93555 0.90609 0.78139 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.15 0.36 -1.75 16 2 C -0.11 -1.78 5.19 -26.73 -0.14 -1.92 16 3 C -0.10 -1.73 2.14 -90.50 -0.19 -1.92 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 5 C 0.12 2.09 5.03 -3.71 -0.02 2.07 16 6 N -0.58 -10.39 2.97 -173.70 -0.52 -10.90 16 7 C 0.59 10.49 7.71 -12.11 -0.09 10.40 16 8 O -0.54 -10.37 16.38 5.37 0.09 -10.29 16 9 C -0.02 -0.30 6.87 -82.53 -0.57 -0.87 16 10 C -0.15 -1.87 10.93 -39.08 -0.43 -2.30 16 11 C -0.04 -0.47 7.10 -35.35 -0.25 -0.72 16 12 C 0.15 1.00 6.50 36.01 0.23 1.23 16 13 O -0.38 -3.35 10.69 -35.23 -0.38 -3.73 16 14 C 0.03 0.15 11.01 101.05 1.11 1.26 16 15 O 0.12 1.62 11.18 17.25 0.19 1.81 16 16 N -0.31 -4.75 8.66 33.29 0.29 -4.46 16 17 C 0.09 1.72 5.87 -3.72 -0.02 1.70 16 18 C -0.15 -2.64 5.78 -26.61 -0.15 -2.79 16 19 C 0.18 3.42 2.53 -67.89 -0.17 3.24 16 20 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 21 N -0.72 -16.85 3.72 -53.39 -0.20 -17.05 16 22 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 26 Si 0.90 22.13 29.55 -169.99 -5.02 17.11 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.74 6.70 -51.93 -0.35 0.40 16 33 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.52 5.72 -51.93 -0.30 1.23 16 36 H 0.08 1.54 6.65 -51.93 -0.35 1.19 16 37 H 0.18 1.82 8.06 -52.48 -0.42 1.40 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.10 1.72 4.21 -56.15 -0.24 1.48 16 44 H 0.09 1.82 7.74 -51.93 -0.40 1.42 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 47 H 0.38 9.66 5.94 -40.82 -0.24 9.42 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -31.82 385.77 -6.89 -38.72 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.31 Total: 8.97 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.58 Total: 0.78 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.30 Total: -59.19 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.10 Total: -12.20 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.82 -6.89 -38.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037932909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.221 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds