Wall clock time and date at job start Tue Mar 31 2020 20:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 H 1.08997 * 109.50466 * 54.93765 * 3 2 1 5 5 C 1.52763 * 109.56291 * 294.96002 * 3 2 1 6 6 N 1.46926 * 109.00696 * 185.55512 * 5 3 2 7 7 C 1.34777 * 120.63128 * 233.58700 * 6 5 3 8 8 O 1.21491 * 120.00023 * 6.52975 * 7 6 5 9 9 C 1.48324 * 119.99897 * 186.52905 * 7 6 5 10 10 C 1.42276 * 126.93709 * 186.92724 * 9 7 6 11 11 C 1.35317 * 103.92017 * 179.97438 * 10 9 7 12 12 C 1.50705 * 126.66082 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47130 * 90.00754 * 12 11 10 14 14 C 1.42898 * 113.99997 * 179.97438 * 13 12 11 15 15 O 1.34014 * 106.66930 * 0.23095 * 11 10 9 16 16 N 1.20901 * 111.84695 * 359.58631 * 15 11 10 17 17 C 1.46928 * 118.73813 * 53.31050 * 6 5 3 18 18 C 1.53191 * 108.77928 * 306.64398 * 17 6 5 19 19 C 1.53039 * 109.31024 * 54.63126 * 18 17 6 20 20 H 1.09006 * 109.46221 * 178.62742 * 19 18 17 21 21 N 1.46501 * 109.45835 * 58.66113 * 19 18 17 22 22 C 1.36936 * 120.00405 * 84.99814 * 21 19 18 23 23 H 1.08001 * 120.00122 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00303 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99626 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00090 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47190 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46840 * 120.00284 * 26 24 22 29 29 H 1.48498 * 109.47115 * 240.00171 * 26 24 22 30 30 H 1.09000 * 109.46907 * 300.00449 * 1 2 3 31 31 H 1.09003 * 109.46997 * 60.00422 * 1 2 3 32 32 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47369 * 239.99307 * 2 1 3 34 34 H 1.09003 * 109.46997 * 119.99578 * 2 1 3 35 35 H 1.08996 * 109.50435 * 65.67577 * 5 3 2 36 36 H 1.08995 * 109.43244 * 305.39302 * 5 3 2 37 37 H 1.08000 * 128.04065 * 359.96331 * 10 9 7 38 38 H 1.08990 * 109.47470 * 330.00236 * 12 11 10 39 39 H 1.09007 * 109.46634 * 210.00052 * 12 11 10 40 40 H 1.08993 * 109.47218 * 59.99947 * 14 13 12 41 41 H 1.08997 * 109.46667 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.46928 * 299.99340 * 14 13 12 43 43 H 1.09005 * 109.58485 * 66.43076 * 17 6 5 44 44 H 1.09007 * 109.58826 * 186.85221 * 17 6 5 45 45 H 1.09000 * 109.50109 * 174.58474 * 18 17 6 46 46 H 1.09003 * 109.49681 * 294.64965 * 18 17 6 47 47 H 0.97007 * 119.99578 * 264.99448 * 21 19 18 48 48 H 0.97006 * 120.00278 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9824 0.8410 5 6 1.6378 2.1272 -1.3050 6 7 2.2451 3.4643 -1.3508 7 6 1.4857 4.5565 -1.5674 8 8 0.2756 4.4565 -1.6088 9 6 2.1273 5.8805 -1.7553 10 6 1.4743 7.1406 -1.8553 11 6 2.4889 8.0212 -2.0164 12 6 2.3673 9.5149 -2.1759 13 8 2.4113 10.1364 -0.8899 14 6 2.3038 11.5608 -0.9288 15 8 3.6226 7.3065 -2.0121 16 7 3.4095 6.1259 -1.8621 17 6 3.6953 3.5887 -1.1499 18 6 4.0737 2.8881 0.1588 19 6 3.5652 1.4451 0.1258 20 1 3.8544 0.9369 1.0457 21 7 4.1508 0.7475 -1.0217 22 6 5.3880 0.1706 -0.9139 23 1 5.9323 0.2301 0.0170 24 6 5.9426 -0.4909 -2.0011 25 7 5.2794 -0.5630 -3.1356 26 14 7.6305 -1.2772 -1.8541 27 1 8.1622 -1.0562 -0.4853 28 1 7.5214 -2.7355 -2.1127 29 1 8.5496 -0.6658 -2.8474 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5524 2.2172 -1.3493 36 1 1.9922 1.5357 -2.1491 37 1 0.4149 7.3463 -1.8129 38 1 1.4212 9.7525 -2.6621 39 1 3.1920 9.8834 -2.7860 40 1 1.3566 11.8412 -1.3893 41 1 2.3451 11.9561 0.0861 42 1 3.1275 11.9715 -1.5129 43 1 4.2210 3.1188 -1.9812 44 1 3.9671 4.6428 -1.0920 45 1 5.1578 2.8894 0.2719 46 1 3.6198 3.4152 0.9981 47 1 3.6620 0.6943 -1.8580 48 1 5.6671 -1.0249 -3.8955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037932910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:19 Heat of formation + Delta-G solvation = 7.261807 kcal Electronic energy + Delta-G solvation = -30178.704379 eV Core-core repulsion = 26045.254062 eV Total energy + Delta-G solvation = -4133.450317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.22118 -40.03865 -38.39433 -37.85617 -34.69048 -34.05531 -33.71030 -32.81403 -31.68126 -29.42456 -28.62670 -28.13635 -26.11697 -25.84569 -24.02169 -23.58591 -23.40840 -22.48270 -20.76471 -19.70459 -18.46710 -18.06788 -17.54576 -17.28662 -16.88738 -16.67744 -16.28402 -15.83202 -15.26247 -15.11289 -14.53375 -14.40463 -14.01815 -13.94951 -13.67573 -13.37270 -13.29051 -13.18881 -12.99575 -12.71602 -12.55401 -12.25897 -11.99076 -11.95940 -11.48166 -11.40643 -11.05996 -10.90187 -10.78139 -10.63367 -10.48915 -10.29386 -10.27401 -10.25426 -10.13046 -9.93982 -9.78056 -9.71981 -9.53536 -8.90136 -8.28608 -6.95794 -5.77592 -3.05780 0.95865 1.45569 2.58130 2.99241 3.22053 3.42595 3.48857 3.50621 3.56763 3.89686 4.23550 4.57701 4.58952 4.69124 4.83127 4.89362 4.90840 4.96306 5.19686 5.23643 5.24014 5.27912 5.36786 5.58276 5.61145 5.64122 5.69151 5.73956 5.81436 5.87566 5.93821 6.09545 6.17159 6.28784 6.37894 6.39975 6.45791 6.52464 6.58308 6.63276 6.75369 6.79022 6.95911 7.00735 7.56272 7.70834 7.88955 8.21165 8.40772 9.52522 10.08982 10.44230 11.44968 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.003033 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.801702 B = 9230.651837 C =10726.199851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.119 3.881 6 N -0.582 5.582 7 C 0.592 3.408 8 O -0.538 6.538 9 C -0.019 4.019 10 C -0.155 4.155 11 C -0.044 4.044 12 C 0.146 3.854 13 O -0.385 6.385 14 C 0.031 3.969 15 O 0.125 5.875 16 N -0.311 5.311 17 C 0.095 3.905 18 C -0.148 4.148 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.235 4.235 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.182 0.818 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 20.590 3.288 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.003 4.003 6 N -0.313 5.313 7 C 0.377 3.623 8 O -0.415 6.415 9 C -0.178 4.178 10 C -0.177 4.177 11 C -0.107 4.107 12 C 0.069 3.931 13 O -0.304 6.304 14 C -0.065 4.065 15 O 0.049 5.951 16 N -0.012 5.012 17 C -0.027 4.027 18 C -0.189 4.189 19 C 0.067 3.933 20 H 0.070 0.930 21 N -0.360 5.360 22 C -0.366 4.366 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.199 0.801 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.065 0.935 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.156 19.502 3.507 21.428 hybrid contribution 0.219 -0.023 -0.458 0.509 sum -7.937 19.479 3.049 21.254 Atomic orbital electron populations 1.21859 0.96784 1.01065 1.01371 1.21415 0.94282 0.95567 1.03476 1.21679 0.97536 0.96229 0.96879 0.91490 1.21715 0.98806 0.80933 0.98850 1.48030 1.09426 1.06146 1.67688 1.16929 0.85933 0.81600 0.77820 1.90749 1.12869 1.85022 1.52814 1.23581 0.89691 0.97242 1.07258 1.22446 1.01913 0.89472 1.03859 1.23876 0.85219 0.95685 1.05903 1.20642 1.02880 0.83136 0.86488 1.87989 1.94937 1.20255 1.27198 1.22818 1.00313 0.79899 1.03451 1.84841 1.32535 1.13102 1.64587 1.74265 1.17562 0.94684 1.14709 1.22348 0.78045 1.02481 0.99828 1.22525 1.01908 0.99082 0.95432 1.20243 0.89641 0.90697 0.92690 0.93014 1.42472 1.19164 1.63886 1.10520 1.19260 0.93608 1.26669 0.97095 0.91201 1.24702 0.98566 1.01552 0.96020 1.69658 1.38060 1.48132 1.02226 0.86163 0.84300 0.78860 0.77127 1.20643 1.22011 1.21997 0.93339 0.92797 0.93110 0.90425 0.91909 0.89345 0.90288 0.80088 0.89378 0.90344 0.93565 0.89064 0.93480 0.89555 0.88213 0.90590 0.93516 0.78152 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.78 5.19 -26.73 -0.14 -1.92 16 3 C -0.10 -1.75 2.12 -90.72 -0.19 -1.94 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 5 C 0.12 2.09 5.02 -3.93 -0.02 2.07 16 6 N -0.58 -10.39 2.98 -173.96 -0.52 -10.91 16 7 C 0.59 10.49 7.71 -12.11 -0.09 10.40 16 8 O -0.54 -10.35 16.38 5.37 0.09 -10.26 16 9 C -0.02 -0.30 6.87 -82.53 -0.57 -0.87 16 10 C -0.15 -1.87 10.93 -39.07 -0.43 -2.30 16 11 C -0.04 -0.46 7.10 -35.35 -0.25 -0.71 16 12 C 0.15 0.99 6.50 36.01 0.23 1.23 16 13 O -0.38 -3.26 10.69 -35.23 -0.38 -3.63 16 14 C 0.03 0.15 11.01 101.05 1.11 1.26 16 15 O 0.12 1.61 11.18 17.25 0.19 1.81 16 16 N -0.31 -4.74 8.66 33.29 0.29 -4.45 16 17 C 0.09 1.73 5.87 -3.71 -0.02 1.71 16 18 C -0.15 -2.68 5.78 -26.61 -0.15 -2.83 16 19 C 0.18 3.43 2.53 -67.89 -0.17 3.26 16 20 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 21 N -0.72 -16.85 3.72 -53.38 -0.20 -17.05 16 22 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 26 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.46 7.70 -51.93 -0.40 1.06 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.52 5.71 -51.93 -0.30 1.22 16 36 H 0.08 1.52 6.64 -51.93 -0.34 1.18 16 37 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 40 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.09 1.82 7.74 -51.93 -0.40 1.41 16 44 H 0.10 1.73 4.21 -56.50 -0.24 1.50 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.38 9.63 5.95 -40.82 -0.24 9.39 16 48 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -31.73 385.75 -6.90 -38.62 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.31 Total: 8.89 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.58 Total: 0.77 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.30 Total: -59.11 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.10 Total: -12.09 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.73 -6.90 -38.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037932910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.885 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds