Wall clock time and date at job start Tue Mar 31 2020 20:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 H 1.09001 * 109.50166 * 304.99733 * 3 2 1 5 5 C 1.53189 * 109.52479 * 65.08261 * 3 2 1 6 6 N 1.46932 * 108.77608 * 174.60167 * 5 3 2 7 7 C 1.34783 * 120.62827 * 126.41402 * 6 5 3 8 8 O 1.21282 * 119.99930 * 355.66945 * 7 6 5 9 9 C 1.50693 * 119.99655 * 175.67531 * 7 6 5 10 10 C 1.53244 * 109.62007 * 277.30653 * 9 7 6 11 11 C 1.50629 * 109.13735 * 184.83428 * 10 9 7 12 12 O 1.21223 * 119.27244 * 208.95289 * 11 10 9 13 13 N 1.34143 * 121.36806 * 28.76919 * 11 10 9 14 14 C 1.34138 * 122.58886 * 359.63677 * 13 11 10 15 15 O 1.21228 * 119.36457 * 180.54408 * 14 13 11 16 16 C 1.50594 * 121.28078 * 0.52067 * 14 13 11 17 17 C 1.46920 * 118.73863 * 306.38957 * 6 5 3 18 18 C 1.53198 * 108.77612 * 53.61107 * 17 6 5 19 19 C 1.53044 * 109.30943 * 305.36254 * 18 17 6 20 20 H 1.09000 * 109.44306 * 181.37771 * 19 18 17 21 21 N 1.46500 * 109.46071 * 301.34504 * 19 18 17 22 22 C 1.36937 * 119.99840 * 275.06604 * 21 19 18 23 23 H 1.07999 * 120.00365 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99761 * 180.02562 * 22 21 19 25 25 N 1.31623 * 120.00232 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00142 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47282 * 59.99524 * 26 24 22 28 28 H 1.48496 * 109.47592 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47003 * 300.00063 * 26 24 22 30 30 H 1.08997 * 109.47118 * 300.00269 * 1 2 3 31 31 H 1.09008 * 109.47331 * 59.99953 * 1 2 3 32 32 H 1.08997 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46988 * 240.00146 * 2 1 3 34 34 H 1.08999 * 109.47489 * 120.00161 * 2 1 3 35 35 H 1.09004 * 109.58420 * 294.38889 * 5 3 2 36 36 H 1.08994 * 109.58912 * 54.81748 * 5 3 2 37 37 H 1.09000 * 109.62408 * 37.67125 * 9 7 6 38 38 H 1.09001 * 109.52294 * 304.57234 * 10 9 7 39 39 H 1.09000 * 109.52148 * 64.76142 * 10 9 7 40 40 H 0.96994 * 118.70345 * 179.61436 * 13 11 10 41 41 H 1.08999 * 109.52564 * 211.02161 * 16 14 13 42 42 H 1.09006 * 109.51830 * 90.83534 * 16 14 13 43 43 H 1.09000 * 109.59016 * 293.82145 * 17 6 5 44 44 H 1.09004 * 109.70297 * 173.46242 * 17 6 5 45 45 H 1.08993 * 109.49832 * 185.41440 * 18 17 6 46 46 H 1.09003 * 109.52388 * 65.33071 * 18 17 6 47 47 H 0.97002 * 120.00031 * 95.06996 * 21 19 18 48 48 H 0.96999 * 120.00154 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 -0.8417 5 6 1.6371 2.1280 1.3094 6 7 2.2436 3.4657 1.3490 7 6 1.4839 4.5579 1.5647 8 8 0.2788 4.4512 1.6500 9 6 2.1320 5.9117 1.6996 10 6 2.6360 6.1002 3.1345 11 6 3.1738 7.4986 3.2893 12 8 4.0571 7.7084 4.0926 13 7 2.6982 8.5150 2.5543 14 6 1.7301 8.3542 1.6399 15 8 1.3508 9.3122 1.0010 16 6 1.1054 7.0068 1.3911 17 6 3.6939 3.5900 1.1496 18 6 4.0738 2.8881 -0.1581 19 6 3.5654 1.4450 -0.1241 20 1 3.8558 0.9363 -1.0434 21 7 4.1497 0.7486 1.0247 22 6 5.3876 0.1728 0.9191 23 1 5.9334 0.2324 -0.0109 24 6 5.9410 -0.4875 2.0075 25 7 5.2761 -0.5598 3.1411 26 14 7.6300 -1.2724 1.8638 27 1 8.6333 -0.2301 1.5284 28 1 7.9910 -1.9103 3.1552 29 1 7.6082 -2.3012 0.7931 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.5517 2.2173 1.3562 36 1 1.9942 1.5398 2.1547 37 1 2.9685 5.9880 1.0050 38 1 1.8124 5.9497 3.8325 39 1 3.4261 5.3782 3.3408 40 1 3.0688 9.4011 2.6896 41 1 0.7982 6.9346 0.3478 42 1 0.2360 6.8835 2.0371 43 1 4.2187 3.1209 1.9818 44 1 3.9680 4.6434 1.0918 45 1 5.1579 2.8893 -0.2700 46 1 3.6207 3.4138 -0.9986 47 1 3.6596 0.6953 1.8601 48 1 5.6630 -1.0209 3.9018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037944095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:22 Heat of formation + Delta-G solvation = -103.924412 kcal Electronic energy + Delta-G solvation = -30844.472498 eV Core-core repulsion = 26706.200785 eV Total energy + Delta-G solvation = -4138.271713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90910 -40.23285 -39.13409 -38.12398 -35.72615 -34.68136 -34.04030 -33.72760 -31.79084 -29.56321 -29.26237 -28.66487 -26.18290 -24.25353 -23.79709 -23.51218 -23.46967 -20.90363 -19.95590 -19.50282 -18.36878 -18.11479 -17.73404 -17.40294 -17.11183 -16.32213 -15.75117 -15.48598 -14.96274 -14.87920 -14.71795 -14.56886 -14.36913 -14.10902 -14.04389 -13.61226 -13.36304 -13.28715 -13.07981 -12.68223 -12.60773 -12.33672 -11.98072 -11.81478 -11.55622 -11.47662 -11.20060 -11.09717 -10.98541 -10.87504 -10.75373 -10.59669 -10.55699 -10.38031 -10.34325 -10.25182 -9.87486 -9.69728 -9.62034 -8.98851 -8.40407 -7.05061 -5.85451 -3.14252 1.14667 2.35304 2.42267 2.49244 3.00301 3.37947 3.43506 3.44517 3.60962 4.03431 4.12343 4.24603 4.51929 4.54246 4.67591 5.00040 5.02774 5.13493 5.19892 5.24216 5.32188 5.42001 5.44358 5.49979 5.52741 5.62161 5.65301 5.70903 5.72844 5.83304 5.98738 6.06505 6.07594 6.24741 6.28334 6.33851 6.46090 6.47331 6.51430 6.61525 6.67611 6.84487 6.90703 6.99423 7.45904 7.49740 7.62418 8.10916 8.32960 9.44956 10.00359 10.35338 11.36640 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011869 B = 0.003557 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.597089 B = 7868.878464 C = 9459.233435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.117 3.883 6 N -0.594 5.594 7 C 0.522 3.478 8 O -0.545 6.545 9 C -0.116 4.116 10 C -0.134 4.134 11 C 0.530 3.470 12 O -0.495 6.495 13 N -0.676 5.676 14 C 0.529 3.471 15 O -0.502 6.502 16 C -0.124 4.124 17 C 0.107 3.893 18 C -0.151 4.151 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.009 4.009 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.413 0.587 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 12.108 -3.927 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.004 4.004 6 N -0.324 5.324 7 C 0.308 3.692 8 O -0.423 6.423 9 C -0.138 4.138 10 C -0.174 4.174 11 C 0.319 3.681 12 O -0.367 6.367 13 N -0.342 5.342 14 C 0.318 3.682 15 O -0.374 6.374 16 C -0.164 4.164 17 C -0.015 4.015 18 C -0.192 4.192 19 C 0.067 3.933 20 H 0.069 0.931 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.205 4.205 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.252 0.748 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.594 12.335 -3.853 15.520 hybrid contribution 1.234 -0.107 0.269 1.267 sum -7.360 12.228 -3.585 14.716 Atomic orbital electron populations 1.21853 0.96779 1.01088 1.01332 1.21418 0.94287 0.95686 1.03438 1.21747 0.97370 0.96210 0.96948 0.91515 1.21761 0.98860 0.81240 0.98588 1.48138 1.08825 1.06609 1.68876 1.19903 0.86959 0.85127 0.77166 1.90697 1.13920 1.86042 1.51636 1.21534 0.99881 0.94126 0.98232 1.21936 1.04983 0.93324 0.97136 1.20810 0.81117 0.87220 0.78960 1.90826 1.27938 1.84581 1.33347 1.44892 1.37553 1.14166 1.37588 1.20945 0.77767 0.91993 0.77450 1.90800 1.59057 1.41916 1.45664 1.21813 0.99420 0.87986 1.07210 1.21874 0.78981 1.00052 1.00587 1.22540 1.02011 0.99417 0.95233 1.20223 0.89716 0.90586 0.92734 0.93066 1.42457 1.19038 1.64060 1.10487 1.19156 0.93606 1.27328 0.97095 0.91327 1.24685 0.98486 1.01313 0.96004 1.69626 1.38162 1.47938 1.02223 0.86331 0.84361 0.79213 0.76608 1.21344 1.21788 1.21373 0.92801 0.93363 0.93150 0.92001 0.90462 0.89371 0.90442 0.87112 0.86117 0.85600 0.74788 0.86246 0.85599 0.89192 0.91217 0.90570 0.93216 0.78106 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.67 37.16 0.36 -1.54 16 2 C -0.11 -1.61 5.19 -26.73 -0.14 -1.75 16 3 C -0.10 -1.49 2.14 -90.50 -0.19 -1.68 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 5 C 0.12 1.70 5.04 -3.71 -0.02 1.68 16 6 N -0.59 -7.75 2.97 -172.77 -0.51 -8.26 16 7 C 0.52 6.29 6.85 -10.99 -0.08 6.21 16 8 O -0.54 -8.00 15.39 5.56 0.09 -7.92 16 9 C -0.12 -1.00 1.81 -91.52 -0.17 -1.17 16 10 C -0.13 -1.12 5.34 -27.79 -0.15 -1.27 16 11 C 0.53 5.02 7.75 -11.30 -0.09 4.93 16 12 O -0.50 -6.45 17.87 5.61 0.10 -6.35 16 13 N -0.68 -5.62 5.09 -11.74 -0.06 -5.68 16 14 C 0.53 4.81 7.74 -11.32 -0.09 4.73 16 15 O -0.50 -6.16 17.88 5.60 0.10 -6.06 16 16 C -0.12 -1.01 4.95 -27.81 -0.14 -1.15 16 17 C 0.11 1.40 5.78 -3.71 -0.02 1.38 16 18 C -0.15 -2.17 5.78 -26.61 -0.15 -2.32 16 19 C 0.18 2.98 2.53 -67.88 -0.17 2.81 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -15.19 3.72 -53.38 -0.20 -15.39 16 22 C -0.24 -5.94 9.93 -15.06 -0.15 -6.09 16 23 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -25.88 13.06 55.49 0.72 -25.15 16 26 Si 0.90 21.07 29.55 -169.99 -5.02 16.04 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.05 0.66 6.70 -51.93 -0.35 0.32 16 31 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.33 7.70 -51.93 -0.40 0.93 16 35 H 0.09 1.29 5.72 -51.93 -0.30 0.99 16 36 H 0.08 1.28 6.64 -51.93 -0.34 0.93 16 37 H 0.11 0.83 6.22 -51.93 -0.32 0.51 16 38 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.13 1.11 7.88 -51.93 -0.41 0.70 16 40 H 0.41 3.08 8.79 -40.82 -0.36 2.72 16 41 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.13 0.99 7.73 -51.93 -0.40 0.59 16 43 H 0.09 1.44 7.74 -51.93 -0.40 1.04 16 44 H 0.07 0.71 5.44 -51.93 -0.28 0.42 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.38 8.72 5.94 -40.82 -0.24 8.48 16 48 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -30.80 378.70 -7.52 -38.32 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -7.16 Total: 10.27 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.29 Total: 4.47 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.05 Total: -54.48 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: 0.29 Total: -20.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.80 -7.52 -38.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037944095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.608 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds