Wall clock time and date at job start Tue Mar 31 2020 20:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47513 * 2 1 4 4 H 1.09001 * 109.52068 * 305.08369 * 3 2 1 5 5 C 1.53195 * 109.49863 * 65.15861 * 3 2 1 6 6 N 1.46919 * 108.77605 * 174.59146 * 5 3 2 7 7 C 1.34773 * 120.63493 * 126.37374 * 6 5 3 8 8 O 1.21281 * 119.99645 * 354.61758 * 7 6 5 9 9 C 1.50697 * 120.00369 * 174.62400 * 7 6 5 10 10 C 1.53246 * 109.62061 * 213.96526 * 9 7 6 11 11 C 1.50628 * 109.15075 * 184.86260 * 10 9 7 12 12 O 1.21224 * 119.26677 * 208.91295 * 11 10 9 13 13 N 1.34136 * 121.37186 * 28.73301 * 11 10 9 14 14 C 1.34147 * 122.58575 * 359.63882 * 13 11 10 15 15 O 1.21226 * 119.35928 * 180.54495 * 14 13 11 16 16 C 1.50588 * 121.28230 * 0.56387 * 14 13 11 17 17 C 1.46934 * 118.73857 * 306.39151 * 6 5 3 18 18 C 1.53183 * 108.77428 * 53.60708 * 17 6 5 19 19 C 1.53033 * 109.49756 * 184.99999 * 3 2 1 20 20 H 1.08998 * 109.45157 * 298.69009 * 19 3 2 21 21 N 1.46501 * 109.46201 * 58.66391 * 19 3 2 22 22 C 1.36933 * 119.99812 * 205.06648 * 21 19 3 23 23 H 1.08001 * 120.00358 * 359.97438 * 22 21 19 24 24 C 1.38811 * 120.00221 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99418 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00450 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47245 * 59.99727 * 26 24 22 28 28 H 1.48504 * 109.47009 * 299.99842 * 26 24 22 29 29 H 1.48500 * 109.47249 * 180.02562 * 26 24 22 30 30 H 1.09003 * 109.47096 * 59.99633 * 1 2 3 31 31 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47435 * 300.00159 * 1 2 3 33 33 H 1.08997 * 109.46854 * 239.99266 * 2 1 3 34 34 H 1.09003 * 109.46742 * 119.99955 * 2 1 3 35 35 H 1.08994 * 109.58481 * 54.79889 * 5 3 2 36 36 H 1.09007 * 109.58525 * 294.37836 * 5 3 2 37 37 H 1.09003 * 109.61655 * 334.32683 * 9 7 6 38 38 H 1.09000 * 109.52122 * 304.56534 * 10 9 7 39 39 H 1.09000 * 109.52653 * 64.74934 * 10 9 7 40 40 H 0.96998 * 118.70895 * 179.65538 * 13 11 10 41 41 H 1.09002 * 109.52511 * 210.98503 * 16 14 13 42 42 H 1.08995 * 109.57167 * 90.82328 * 16 14 13 43 43 H 1.08998 * 109.58147 * 293.82083 * 17 6 5 44 44 H 1.08996 * 109.58804 * 173.40186 * 17 6 5 45 45 H 1.09003 * 109.50079 * 185.41291 * 18 17 6 46 46 H 1.09008 * 109.49816 * 65.31784 * 18 17 6 47 47 H 0.96996 * 119.99593 * 25.06413 * 21 19 3 48 48 H 0.96996 * 120.00404 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6386 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4858 4.5565 1.5672 8 8 0.2793 4.4527 1.6339 9 6 2.1358 5.9068 1.7263 10 6 1.3350 6.7488 2.7255 11 6 1.9228 8.1343 2.7867 12 8 1.8291 8.7730 3.8128 13 7 2.5503 8.6739 1.7312 14 6 2.7004 8.0215 0.5687 15 8 3.2867 8.5615 -0.3446 16 6 2.1543 6.6313 0.3762 17 6 3.6953 3.5887 1.1498 18 6 4.0737 2.8880 -0.1588 19 6 3.5652 1.4449 -0.1257 20 1 4.0007 0.9261 0.7283 21 7 3.9542 0.7619 -1.3621 22 6 5.1917 0.1849 -1.4653 23 1 5.8812 0.2337 -0.6354 24 6 5.5601 -0.4627 -2.6365 25 7 4.7196 -0.5226 -3.6476 26 14 7.2480 -1.2504 -2.7770 27 1 7.3971 -2.2919 -1.7291 28 1 8.2950 -0.2129 -2.5963 29 1 7.3941 -1.8720 -4.1178 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.9964 1.5377 2.1548 36 1 0.5532 2.2161 1.3585 37 1 3.1562 5.7813 2.0885 38 1 0.2967 6.8108 2.3997 39 1 1.3814 6.2861 3.7113 40 1 2.9100 9.5712 1.8116 41 1 2.7881 6.0844 -0.3220 42 1 1.1407 6.6889 -0.0203 43 1 4.2209 3.1189 1.9811 44 1 3.9671 4.6427 1.0918 45 1 5.1579 2.8893 -0.2719 46 1 3.6193 3.4147 -0.9981 47 1 3.3350 0.7184 -2.1074 48 1 3.8427 -0.1146 -3.5742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037944098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:26 Heat of formation + Delta-G solvation = -105.360525 kcal Electronic energy + Delta-G solvation = -30470.861915 eV Core-core repulsion = 26332.527928 eV Total energy + Delta-G solvation = -4138.333988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.03634 -40.38908 -39.24463 -38.18749 -35.85794 -35.07504 -34.35287 -33.86073 -31.94260 -29.60751 -29.37707 -28.86051 -26.10432 -24.28557 -23.93437 -23.64001 -22.85507 -21.07177 -20.15506 -19.82268 -19.10390 -18.22968 -17.79015 -17.47947 -17.35292 -16.51280 -15.97304 -15.51997 -15.19063 -15.03660 -14.78886 -14.76062 -14.54748 -14.17745 -14.00993 -13.66107 -13.56782 -13.42529 -13.24230 -13.00060 -12.80163 -12.33331 -12.13323 -11.93701 -11.80992 -11.62469 -11.47210 -11.23955 -11.01122 -10.80717 -10.70036 -10.67871 -10.65062 -10.42259 -10.34263 -10.06490 -9.95779 -9.89532 -9.23828 -8.97829 -8.71320 -7.11211 -6.15984 -3.17068 1.03330 2.21208 2.28490 2.31348 2.76997 3.47252 3.48634 3.49864 3.67728 3.86300 3.98486 4.05313 4.40453 4.50795 4.60150 4.81812 4.87333 4.98978 5.03482 5.05107 5.14535 5.20810 5.27843 5.32997 5.39871 5.48478 5.50794 5.55304 5.57337 5.71452 5.82549 5.94364 5.97611 6.06804 6.16876 6.19610 6.28758 6.34349 6.34828 6.47795 6.64980 6.75271 6.86999 6.88761 7.21585 7.35487 7.73189 7.88268 8.69072 9.14879 10.01358 10.16142 11.31924 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.003028 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.486219 B = 9244.182580 C =10562.752875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.600 5.600 7 C 0.525 3.475 8 O -0.538 6.538 9 C -0.116 4.116 10 C -0.126 4.126 11 C 0.530 3.470 12 O -0.500 6.500 13 N -0.676 5.676 14 C 0.531 3.469 15 O -0.494 6.494 16 C -0.134 4.134 17 C 0.101 3.899 18 C -0.152 4.152 19 C 0.189 3.811 20 H 0.049 0.951 21 N -0.731 5.731 22 C -0.332 4.332 23 H 0.064 0.936 24 C -0.042 4.042 25 N -0.942 5.942 26 Si 1.077 2.923 27 H -0.295 1.295 28 H -0.296 1.296 29 H -0.285 1.285 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.414 0.586 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.367 0.633 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 12.513 13.060 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.332 5.332 7 C 0.311 3.689 8 O -0.416 6.416 9 C -0.138 4.138 10 C -0.166 4.166 11 C 0.319 3.681 12 O -0.373 6.373 13 N -0.342 5.342 14 C 0.319 3.681 15 O -0.365 6.365 16 C -0.174 4.174 17 C -0.022 4.022 18 C -0.193 4.193 19 C 0.078 3.922 20 H 0.067 0.933 21 N -0.372 5.372 22 C -0.463 4.463 23 H 0.082 0.918 24 C -0.240 4.240 25 N -0.587 5.587 26 Si 0.908 3.092 27 H -0.223 1.223 28 H -0.223 1.223 29 H -0.211 1.211 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.253 0.747 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.201 0.799 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.218 11.950 12.279 18.227 hybrid contribution -0.797 1.300 0.786 1.716 sum -7.015 13.250 13.065 19.886 Atomic orbital electron populations 1.21846 0.96604 1.01202 1.01361 1.21438 0.94515 0.95592 1.03390 1.21805 0.97673 0.96340 0.96776 0.91224 1.21804 0.99549 0.81085 0.97942 1.48180 1.08687 1.06797 1.69498 1.19952 0.87025 0.85065 0.76852 1.90713 1.13793 1.85879 1.51198 1.21549 1.02245 0.94016 0.95997 1.21843 1.02278 0.89739 1.02728 1.20883 0.76011 0.89176 0.82064 1.90808 1.54509 1.62686 1.29254 1.44884 1.54284 1.20977 1.14030 1.20766 0.77905 0.88364 0.81081 1.90835 1.38026 1.68102 1.39563 1.21923 1.06125 0.91203 0.98143 1.21993 0.79242 1.01199 0.99727 1.22691 1.02533 0.99271 0.94828 1.20115 0.90623 0.90428 0.90996 0.93273 1.42404 1.16565 1.65610 1.12659 1.19989 0.92462 1.32215 1.01621 0.91822 1.25722 1.05774 1.00152 0.92393 1.70890 1.08299 1.47426 1.32098 0.83275 0.74205 0.75878 0.75817 1.22289 1.22301 1.21081 0.92982 0.93050 0.93101 0.90206 0.92304 0.91341 0.88863 0.87213 0.85506 0.86211 0.74675 0.85813 0.85921 0.90989 0.90421 0.90290 0.92169 0.79948 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 37.16 0.36 -1.55 16 2 C -0.11 -1.64 5.31 -26.73 -0.14 -1.78 16 3 C -0.11 -1.53 1.92 -90.50 -0.17 -1.71 16 4 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 5 C 0.12 1.44 5.34 -3.71 -0.02 1.42 16 6 N -0.60 -6.58 2.97 -172.78 -0.51 -7.10 16 7 C 0.52 5.46 6.71 -10.99 -0.07 5.39 16 8 O -0.54 -7.15 15.59 5.56 0.09 -7.06 16 9 C -0.12 -0.83 1.83 -91.52 -0.17 -1.00 16 10 C -0.13 -0.85 5.10 -27.79 -0.14 -0.99 16 11 C 0.53 4.25 7.75 -11.31 -0.09 4.16 16 12 O -0.50 -5.65 17.87 5.61 0.10 -5.55 16 13 N -0.68 -4.96 5.09 -11.74 -0.06 -5.02 16 14 C 0.53 4.49 7.74 -11.32 -0.09 4.41 16 15 O -0.49 -5.99 17.87 5.60 0.10 -5.89 16 16 C -0.13 -0.97 5.28 -27.81 -0.15 -1.12 16 17 C 0.10 1.05 6.15 -3.71 -0.02 1.02 16 18 C -0.15 -2.22 5.66 -26.61 -0.15 -2.37 16 19 C 0.19 3.23 2.19 -67.89 -0.15 3.08 16 20 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 21 N -0.73 -16.42 4.33 -53.38 -0.23 -16.65 16 22 C -0.33 -8.61 9.93 -15.06 -0.15 -8.76 16 23 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 24 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 25 N -0.94 -27.92 13.70 55.49 0.76 -27.16 16 26 Si 1.08 24.85 29.92 -169.99 -5.09 19.77 16 27 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 33 H 0.08 1.43 7.22 -51.93 -0.37 1.06 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.18 5.72 -51.93 -0.30 0.89 16 37 H 0.11 0.63 6.22 -51.93 -0.32 0.31 16 38 H 0.13 0.85 7.71 -51.93 -0.40 0.45 16 39 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.41 2.73 8.79 -40.82 -0.36 2.37 16 41 H 0.12 0.93 7.95 -51.93 -0.41 0.52 16 42 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.61 5.39 -51.93 -0.28 0.33 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 47 H 0.37 8.74 6.35 -40.82 -0.26 8.48 16 48 H 0.26 7.43 6.77 -40.82 -0.28 7.15 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -33.38 380.90 -7.54 -40.91 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.18 Total: 9.07 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.25 Total: -1.05 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.04 Total: -55.93 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.29 Total: -18.50 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.09 Total: 19.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.38 -7.54 -40.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037944098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.446 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds